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tommylees112/napari_image_open.py

Created August 17, 2021 22:42
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Open xarray image in napari
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napari_image_open.py
import napari
import xarray as xr
from pathlib import Path
data_dir = Path("/path/to/data")
# open data
ds = xr.open_dataset(data_dir / "data.nc")
da = ds["VARIABLE_NAME"]
# initialise viewer and view
viewer = napari.Viewer()
new_layer = viewer.add_image(da, colormap="magma")
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