Script to install cdo on a linux machine

install_cdo.sh

#!/bin/bash

#   Institut für Wetter- und Klimakommunikation GmbH / Qmet
#   O. Maywald <[email protected]>

#   This should install CDO with grib2, netcdf and HDF5 support. Note that the binaries are in ~/cdo_install/bin.
#   For further information look:
#   http://www.studytrails.com/blog/install-climate-data-operator-cdo-with-netcdf-grib2-and-hdf5-support/

#   docker-command
#   use this command to start a docker container
# docker run -it --name cdo --rm -v $(pwd):~/cdo_install -w ~/cdo_install ubuntu:latest bash
mkdir -p ~/cdo_install

home=~/cdo_install
apt-get update && apt-get install -y wget build-essential checkinstall unzip m4 curl libcurl4-gnutls-dev

#   download, compile and install --> zlib
cd $home
wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/zlib-1.2.8.tar.gz
tar -xzvf zlib-1.2.8.tar.gz
cd zlib-1.2.8
./configure -prefix=~/cdo_install
make && make check && make install

#   download, compile and install --> hdf5
cd $home
wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/hdf5-1.8.13.tar.gz
tar -xzvf hdf5-1.8.13.tar.gz
cd hdf5-1.8.13
./configure -with-zlib=~/cdo_install -prefix=~/cdo_install CFLAGS=-fPIC
make && make check && make install

#   download, compile and install --> netCDF
cd $home
wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.5.0.tar.gz
tar -xzvf netcdf-4.5.0.tar.gz
cd netcdf-4.5.0/
CPPFLAGS=-I~/cdo_install/include LDFLAGS=-L~/cdo_install/lib ./configure -prefix=~/cdo_install CFLAGS=-fPIC
make && make check && make install

#   download, compile and install --> jasper
cd $home
wget http://www.ece.uvic.ca/~frodo/jasper/software/jasper-1.900.1.zip
unzip jasper-1.900.1.zip
cd jasper-1.900.1
./configure -prefix=~/cdo_install CFLAGS=-fPIC
make && make check && make install

#   download, compile and install --> grib_api
cd $home
wget https://software.ecmwf.int/wiki/download/attachments/3473437/grib_api-1.24.0-Source.tar.gz?api=v2 -O grib_api-1.24.0.tar.gz
tar -xzvf grib_api-1.24.0.tar.gz
cd grib_api-1.24.0-Source
./configure -prefix=~/cdo_install CFLAGS=-fPIC -with-netcdf=~/cdo_install -with-jasper=~/cdo_install
make && make check && make install

#   download, compile and install --> cdo
cd $home
wget https://code.mpimet.mpg.de/attachments/download/15653/cdo-1.9.1.tar.gz
tar -xvzf cdo-1.9.1.tar.gz
cd cdo-1.9.1
./configure -prefix=~/cdo_install CFLAGS=-fPIC -with-netcdf=~/cdo_install -with-jasper=~/cdo_install -with-hdf5=~/cdo_install -with-grib_api=~/cdo_install/grib_api-1.24.0-Source
make && make check && make install

#   set PATH
#echo "PATH=\"/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:~/cdo_install/bin\"" > /etc/environment