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#!/bin/bash | |
# Instal php5.6 with phpbrew on ubuntu 18.04 | |
# Install all dependencies | |
sudo apt update | |
sudo apt install wget php build-essential libxml2-dev libxslt1-dev libbz2-dev libcurl4-openssl-dev libmcrypt-dev libreadline-dev libssl-dev autoconf | |
wget https://github.com/phpbrew/phpbrew/raw/master/phpbrew | |
chmod +x phpbrew | |
mv phpbrew /usr/local/bin |
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import pandas as pd | |
def read_blast_output(output): | |
"""Reads BLAST output (outfmt 6) and returns a pandas dataframe.""" | |
return pd.read_csv(output, | |
sep="\t", | |
names=["qseqid", "sseqid", "pident", "length", "mismatch", "gapopen", "qstart", "qend", "sstart", "send", "evalue", "bitscore"], | |
index_col="qseqid") |