NB: If you're looking for ideas to plan you short trip to Japan, check out Dos semanas en Japón: ideas y consejos (in Spanish)
北海道 (Hokkaidō): island, region and largest prefecture.本州 (Honshū): largest island- 四国 (Shikoku): island and region
九州 (Kyūshū): island and region- 琉球諸島 (Ryūkyū-shotō), 南西諸島 (Nansei-shotō) or 琉球弧 (Ryūkyū-ko): archipelago
Regions:
- Tōhoku (東北地方)
Kantō (関東地方)Chūbu (中部地方)Kansai (関西地方)Chūgoku (中国地方)- Shikoku (四国)
Kyushu (九州)- Okinawa (沖縄県)
Hotel Okura (ホテルオークラ)(stay)- Tokyo Tower
Tokyo Skytree(go up)Train Bar.(have a drink)- Park Hyatt Hotel (restaurant at the top, nice views)
- Tokyo Bay Aqua-Line
Bar Kamiya (denki bran)- Pokémon Center Tokyo (Shiodome)
Asakusa Culture Tourist Information CenterTsukiji fish marketNKH's Museum of Broadcasting- My Back Pages (Bob Dylan bar in Yoyogi; see inside).
National Art Museum- Architecture tour in Omotesando
- Times Café (co-working space, charges by time spent inside)
Sentou- Meetrip Tour
Jinbōchō (“known as Tokyo's center of used-book stores and publishing houses, and as a popular antique and curious shopping area”)N3331 café (narrow café between train railtracks)- Omotesando Koffee
Bear Pond Espresso- Niwa no yu onsen
- Haco Stadium: Ikebukuro, Chiba
- Arakicho (out at night; between Shinjuku Gyoen and Yotsuya Station)
Blue Bottle café (Omotesando)Little Nap coffe stand (near Yoyogi-hachiman Station)Toshio Kashio Memorial Museum (Seijo, Setagaya, Tokyo)- Showa Kinen Park
La Jetée(go inside; have a drink)
- Gunkanjima (軍艦島) (how to visit it)
- Lafcadio Hearn Memorial Museum
- Fukui Prefectural Dinosaur Museum
- Nanadaru Falls (onsen)
- Kumagaya, Saitama. Read also this.
- Kamikochi (Nagano) for hiking. "There's an overnight bus that goes there directly from Shinjuku station. It's beautiful up there in the summer. It's like a rain forest. and 10 degrees cooler than Tokyo." Summer or autumn. Also, Matsumoto.
- Namba Park (Osaka)
Enoshima- Hitachi Seaside Park
- The Museum of the Little Prince (Hakone, Kanagawa)
- Toho Shrine
- Kumano
- Kurashiki, Okayama
- Seikan tunnel
Himeji Castleagain after the renovation (March 2015)- Phoenix Hall, Byodo-in Temple (Uji City, Kyoto)
- Kanazawa, Ishikawa Prefecture (2.5h from Tokyo on the new Shinkansen opening March 2015)
- Isehara
- Hokudan Earthquake Memorial Park
- Universal Studios (Osaka): Cool Japan
- Meetrip Tours: Kyoto, and Osaka
- Koburi Pass (hiking route 90' away from Tokyo)
- “Fox village”
- Aoshima, Ehime prefecture (cat's island)
- Rabbit's island
Kawasaki Warehouse (Kowloon Walled City-themed arcade in Kawasaki)- Takachiho Gorge (Miyazaki, Kyushu)
- TKP Gate Tower Building, "The Beehive" (Osaka)
- Ishinomori Manga Museum (Ishinomaki, Miyagi Prefecture)
- Nipponbashi (Osaka)
- Yunomine Onsen, Tsuboyu
- “World's nicest Starbucks” (Kobe)
- Shirakawa & Gokayama villages
- Okunoin Cemetery and Kongobuji Temple (Koya, Wakayama Prefecture)
- Kawagoe
- Huis Ten Bosch theme park (Sasebo, Nagasaki)
- Henn-na Hotel (robot hotel; see also; Sasebo, Nagasaki)
- Trekking between Kibune and Kurama (near Kyoto).
- Metropolitan Area Outer Underground Discharge Channel (Kasukabe, Saitama).
- Picture Book Museum (Iwaki, Fukushima).
- Hōshi Ryokan (Komatsu, Ishikawa Prefecture)
- Spring.
- Summer:
- Izu-Shirahama (beach)
- Fuji Rock Festival (end of July)
- Autumn.
- Winter:
Sapporo.Gala Yuzawa ski resort- Kawaba ski resort.
Nattō (納豆)- Chawanmushi
SushiKaiten-sushi
OkonomiyakiUdonRamen(guide to regional varieties)Takoyaki- Shiokara
Umeboshi- Fugu
- Sukiyabashi Jiro
Midori no sushi (Umegaoka, Shibuya, Akasaka, Mark City...)- Ninja Akasaka (?)
- Uobei - 魚べい (Shibuya ku, dogenzaka, 2-29-11)
Downstairs café赤鬼 池袋店 (Akaoni): okonomiyaki place in IkebukuroTunahachi (tempura place near Shinjuku)
Tokyo Game Show (20–21 Sep 2014)- Tokyo Marathon
JLPT N4(but actually pass it!!)- Game Cafe Junk
- Festivals:
- Fukagawa Festival
- Sanno Matsuri
- Kanda Matsuri
Kanamara Matsuri
- Farmer's markets.
Climb Mount Fuji (Jun–Sep)(although I only reached the eighth station; not the summit…).- Osamu Tezuka Manga Museum (Takarazuka). Web site.
Open-air bath
Capsule hotelPrivate onsenLove hotel- Neko café
Pachinko(play)Manga caféKairo (hand warmers)