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February 25, 2016 00:54
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r (homebrew/science/r) on x86_64-linux - Homebrew build logs
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| Homebrew build logs for homebrew/science/r on x86_64-linux | |
| Build date: 2016-02-25 11:51:39 |
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| HOMEBREW_VERSION: 0.9.5 | |
| ORIGIN: https://github.com/Homebrew/linuxbrew | |
| HEAD: d531921761cd475ed991a788a9d2dde33127e64e | |
| Last commit: 6 hours ago | |
| HOMEBREW_PREFIX: /bio/linuxbrew | |
| HOMEBREW_REPOSITORY: /bio/linuxbrew | |
| HOMEBREW_CELLAR: /bio/linuxbrew/Cellar | |
| HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com | |
| CPU: 72-core 64-bit haswell | |
| Kernel: Linux 3.10.0-327.4.5.el7.x86_64 x86_64 GNU/Linux | |
| OS: Red Hat Enterprise Linux Server release 7.2 (Maipo) | |
| Codename: Maipo | |
| OS glibc: 2.17 | |
| OS gcc: 4.8.5 | |
| Linuxbrew glibc: N/A | |
| Linuxbrew gcc: 5.3.0 | |
| Clang: N/A | |
| X11: 2.7.8 => /usr | |
| System Ruby: 2.2.2 => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Perl: /usr/bin/perl | |
| Python: /bio/linuxbrew/bin/python => /bio/linuxbrew/Cellar/python/2.7.11/bin/python2.7 | |
| Ruby: /bio/linuxbrew/bin/ruby => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Java: openjdk version "1.8.0_71" |
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| Please note that these warnings are just used to help the Homebrew maintainers | |
| with debugging if you file an issue. If everything you use Homebrew for is | |
| working fine: please don't worry and just ignore them. Thanks! | |
| Warning: You have unlinked kegs in your Cellar | |
| Leaving kegs unlinked can lead to build-trouble and cause brews that depend on | |
| those kegs to fail to run properly once built. Run `brew link` on these: | |
| r | |
| aspera-connect |
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| Formula: r | |
| Tap: homebrew/science | |
| Path: /bio/linuxbrew/Library/Taps/homebrew/homebrew-science/r.rb |
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| 2016-02-25 11:50:45 +1100 | |
| ./configure | |
| --prefix=/bio/linuxbrew/Cellar/r/3.2.3 | |
| --with-libintl-prefix=/bio/linuxbrew/opt/gettext | |
| --enable-memory-profiling | |
| --libdir=/bio/linuxbrew/Cellar/r/3.2.3/lib | |
| --enable-R-shlib | |
| --with-blas=-framework Accelerate | |
| --with-lapack | |
| checking build system type... x86_64-pc-linux-gnu | |
| checking host system type... x86_64-pc-linux-gnu | |
| loading site script './config.site' | |
| loading build-specific script './config.site' | |
| checking for pwd... /usr/bin/pwd | |
| checking whether builddir is srcdir... yes | |
| checking for working aclocal... found | |
| checking for working autoconf... found | |
| checking for working automake... found | |
| checking for working autoheader... found | |
| checking for gawk... gawk | |
| checking whether ln -s works... yes | |
| checking for bison... bison -y | |
| checking for ar... ar | |
| checking for a BSD-compatible install... /usr/bin/install -c | |
| checking for sed... /bio/linuxbrew/bin/sed | |
| checking for which... /usr/bin/which | |
| checking for less... /usr/bin/less | |
| checking for gtar... /usr/bin/gtar | |
| checking for tex... /usr/bin/tex | |
| checking for pdftex... /usr/bin/pdftex | |
| checking for pdflatex... /usr/bin/pdflatex | |
| checking for makeindex... /usr/bin/makeindex | |
| checking for texi2any... /bio/linuxbrew/bin/texi2any | |
| checking whether texi2any version is at least 5.1... yes | |
| checking for ginstall-info... no | |
| checking for install-info... /bio/linuxbrew/bin/install-info | |
| checking for texi2dvi... /bio/linuxbrew/bin/texi2dvi | |
| checking for kpsewhich... /usr/bin/kpsewhich | |
| checking for latex inconsolata package... missing | |
| configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally | |
| checking for unzip... /bio/linuxbrew/bin/unzip | |
| checking for zip... /usr/bin/zip | |
| checking for gzip... /usr/bin/gzip | |
| checking for bzip2... /bio/linuxbrew/bin/bzip2 | |
| checking for firefox... /usr/bin/firefox | |
| using default browser ... /usr/bin/firefox | |
| checking for acroread... no | |
| checking for acroread4... no | |
| checking for xdg-open... /usr/bin/xdg-open | |
| checking for notangle... false | |
| checking for realpath... /usr/bin/realpath | |
| checking for pkg-config... /bio/linuxbrew/bin/pkg-config | |
| checking for gcc... /bio/linuxbrew/bin/gcc-5 | |
| checking whether the C compiler works... yes | |
| checking for C compiler default output file name... a.out | |
| checking for suffix of executables... | |
| checking whether we are cross compiling... no | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether /bio/linuxbrew/bin/gcc-5 accepts -g... yes | |
| checking for /bio/linuxbrew/bin/gcc-5 option to accept ISO C89... none needed | |
| checking how to run the C preprocessor... /bio/linuxbrew/bin/gcc-5 -E | |
| checking for grep that handles long lines and -e... /usr/bin/grep | |
| checking for egrep... /usr/bin/grep -E | |
| checking whether /bio/linuxbrew/bin/gcc-5 needs -traditional... no | |
| checking how to run the C preprocessor... /bio/linuxbrew/bin/gcc-5 -E | |
| defining F77 to be /bio/linuxbrew/bin/gfortran | |
| checking whether we are using the GNU Fortran 77 compiler... yes | |
| checking whether /bio/linuxbrew/bin/gfortran accepts -g... yes | |
| checking whether we are using the GNU C++ compiler... yes | |
| checking whether /bio/linuxbrew/bin/g++-5 accepts -g... yes | |
| checking how to run the C++ preprocessor... /bio/linuxbrew/bin/g++-5 -E | |
| checking whether __attribute__((visibility())) is supported... yes | |
| checking whether /bio/linuxbrew/bin/gcc-5 accepts -fvisibility... yes | |
| checking whether /bio/linuxbrew/bin/gfortran accepts -fvisibility... yes | |
| checking for ANSI C header files... yes | |
| checking for sys/types.h... yes | |
| checking for sys/stat.h... yes | |
| checking for stdlib.h... yes | |
| checking for string.h... yes | |
| checking for memory.h... yes | |
| checking for strings.h... yes | |
| checking for inttypes.h... yes | |
| checking for stdint.h... yes | |
| checking for unistd.h... yes | |
| checking minix/config.h usability... no | |
| checking minix/config.h presence... no | |
| checking for minix/config.h... no | |
| checking whether it is safe to define __EXTENSIONS__... yes | |
| checking whether we are using the GNU Objective C compiler... yes | |
| checking whether /bio/linuxbrew/bin/gcc-5 accepts -g... yes | |
| checking for Objective C++ compiler... trying some possibilities | |
| checking whether /bio/linuxbrew/bin/g++-5 can compile ObjC++... yes | |
| /bio/linuxbrew/bin/g++-5 | |
| checking for a sed that does not truncate output... (cached) /bio/linuxbrew/bin/sed | |
| checking for fgrep... /usr/bin/grep -F | |
| checking for ld used by /bio/linuxbrew/bin/gcc-5... /bio/linuxbrew/bin/ld | |
| checking if the linker (/bio/linuxbrew/bin/ld) is GNU ld... yes | |
| checking for BSD- or MS-compatible name lister (nm)... /bio/linuxbrew/bin/nm -B | |
| checking the name lister (/bio/linuxbrew/bin/nm -B) interface... BSD nm | |
| checking the maximum length of command line arguments... 1572864 | |
| checking whether the shell understands some XSI constructs... yes | |
| checking whether the shell understands "+="... yes | |
| checking for /bio/linuxbrew/bin/ld option to reload object files... -r | |
| checking for objdump... objdump | |
| checking how to recognize dependent libraries... pass_all | |
| checking for strip... strip | |
| checking for ranlib... ranlib | |
| checking command to parse /bio/linuxbrew/bin/nm -B output from /bio/linuxbrew/bin/gcc-5 object... ok | |
| checking for dlfcn.h... yes | |
| checking whether we are using the GNU C++ compiler... (cached) yes | |
| checking whether /bio/linuxbrew/bin/g++-5 accepts -g... (cached) yes | |
| checking how to run the C++ preprocessor... /bio/linuxbrew/bin/g++-5 -E | |
| checking whether we are using the GNU Fortran 77 compiler... (cached) yes | |
| checking whether /bio/linuxbrew/bin/gfortran accepts -g... (cached) yes | |
| checking for objdir... .libs | |
| checking if /bio/linuxbrew/bin/gcc-5 supports -fno-rtti -fno-exceptions... yes | |
| checking for /bio/linuxbrew/bin/gcc-5 option to produce PIC... -fPIC -DPIC | |
| checking if /bio/linuxbrew/bin/gcc-5 PIC flag -fPIC -DPIC works... yes | |
| checking if /bio/linuxbrew/bin/gcc-5 static flag -static works... no | |
| checking if /bio/linuxbrew/bin/gcc-5 supports -c -o file.o... yes | |
| checking if /bio/linuxbrew/bin/gcc-5 supports -c -o file.o... (cached) yes | |
| checking whether the /bio/linuxbrew/bin/gcc-5 linker (/bio/linuxbrew/bin/ld) supports shared libraries... yes | |
| checking whether -lc should be explicitly linked in... no | |
| checking dynamic linker characteristics... GNU/Linux ld.so | |
| checking how to hardcode library paths into programs... immediate | |
| checking whether stripping libraries is possible... yes | |
| checking if libtool supports shared libraries... yes | |
| checking whether to build shared libraries... yes | |
| checking whether to build static libraries... no | |
| checking for ld used by /bio/linuxbrew/bin/g++-5... /bio/linuxbrew/bin/ld | |
| checking if the linker (/bio/linuxbrew/bin/ld) is GNU ld... yes | |
| checking whether the /bio/linuxbrew/bin/g++-5 linker (/bio/linuxbrew/bin/ld) supports shared libraries... yes | |
| checking for /bio/linuxbrew/bin/g++-5 option to produce PIC... -fPIC -DPIC | |
| checking if /bio/linuxbrew/bin/g++-5 PIC flag -fPIC -DPIC works... yes | |
| checking if /bio/linuxbrew/bin/g++-5 static flag -static works... no | |
| checking if /bio/linuxbrew/bin/g++-5 supports -c -o file.o... yes | |
| checking if /bio/linuxbrew/bin/g++-5 supports -c -o file.o... (cached) yes | |
| checking whether the /bio/linuxbrew/bin/g++-5 linker (/bio/linuxbrew/bin/ld) supports shared libraries... yes | |
| checking dynamic linker characteristics... GNU/Linux ld.so | |
| checking how to hardcode library paths into programs... immediate | |
| checking if libtool supports shared libraries... yes | |
| checking whether to build shared libraries... yes | |
| checking whether to build static libraries... no | |
| checking for /bio/linuxbrew/bin/gfortran option to produce PIC... -fPIC | |
| checking if /bio/linuxbrew/bin/gfortran PIC flag -fPIC works... yes | |
| checking if /bio/linuxbrew/bin/gfortran static flag -static works... no | |
| checking if /bio/linuxbrew/bin/gfortran supports -c -o file.o... yes | |
| checking if /bio/linuxbrew/bin/gfortran supports -c -o file.o... (cached) yes | |
| checking whether the /bio/linuxbrew/bin/gfortran linker (/bio/linuxbrew/bin/ld) supports shared libraries... yes | |
| checking dynamic linker characteristics... GNU/Linux ld.so | |
| checking how to hardcode library paths into programs... immediate | |
| checking for cos in -lm... yes | |
| checking for sin in -lm... yes | |
| checking for dlopen in -ldl... yes | |
| checking readline/history.h usability... yes | |
| checking readline/history.h presence... yes | |
| checking for readline/history.h... yes | |
| checking readline/readline.h usability... yes | |
| checking readline/readline.h presence... yes | |
| checking for readline/readline.h... yes | |
| checking for rl_callback_read_char in -lreadline... no | |
| checking for main in -lncurses... yes | |
| checking for rl_callback_read_char in -lreadline... yes | |
| checking for history_truncate_file... yes | |
| checking whether rl_completion_matches exists and is declared... yes | |
| checking for ANSI C header files... (cached) yes | |
| checking for dirent.h that defines DIR... yes | |
| checking for library containing opendir... none required | |
| checking for sys/wait.h that is POSIX.1 compatible... yes | |
| checking arpa/inet.h usability... yes | |
| checking arpa/inet.h presence... yes | |
| checking for arpa/inet.h... yes | |
| checking dl.h usability... no | |
| checking dl.h presence... no | |
| checking for dl.h... no | |
| checking for dlfcn.h... (cached) yes | |
| checking elf.h usability... yes | |
| checking elf.h presence... yes | |
| checking for elf.h... yes | |
| checking features.h usability... yes | |
| checking features.h presence... yes | |
| checking for features.h... yes | |
| checking fcntl.h usability... yes | |
| checking fcntl.h presence... yes | |
| checking for fcntl.h... yes | |
| checking floatingpoint.h usability... no | |
| checking floatingpoint.h presence... no | |
| checking for floatingpoint.h... no | |
| checking fpu_control.h usability... yes | |
| checking fpu_control.h presence... yes | |
| checking for fpu_control.h... yes | |
| checking glob.h usability... yes | |
| checking glob.h presence... yes | |
| checking for glob.h... yes | |
| checking grp.h usability... yes | |
| checking grp.h presence... yes | |
| checking for grp.h... yes | |
| checking langinfo.h usability... yes | |
| checking langinfo.h presence... yes | |
| checking for langinfo.h... yes | |
| checking netdb.h usability... yes | |
| checking netdb.h presence... yes | |
| checking for netdb.h... yes | |
| checking netinet/in.h usability... yes | |
| checking netinet/in.h presence... yes | |
| checking for netinet/in.h... yes | |
| checking pwd.h usability... yes | |
| checking pwd.h presence... yes | |
| checking for pwd.h... yes | |
| checking sched.h usability... yes | |
| checking sched.h presence... yes | |
| checking for sched.h... yes | |
| checking for strings.h... (cached) yes | |
| checking sys/param.h usability... yes | |
| checking sys/param.h presence... yes | |
| checking for sys/param.h... yes | |
| checking sys/resource.h usability... yes | |
| checking sys/resource.h presence... yes | |
| checking for sys/resource.h... yes | |
| checking sys/select.h usability... yes | |
| checking sys/select.h presence... yes | |
| checking for sys/select.h... yes | |
| checking sys/socket.h usability... yes | |
| checking sys/socket.h presence... yes | |
| checking for sys/socket.h... yes | |
| checking for sys/stat.h... (cached) yes | |
| checking sys/time.h usability... yes | |
| checking sys/time.h presence... yes | |
| checking for sys/time.h... yes | |
| checking sys/times.h usability... yes | |
| checking sys/times.h presence... yes | |
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| checking sys/utsname.h usability... yes | |
| checking sys/utsname.h presence... yes | |
| checking for sys/utsname.h... yes | |
| checking for unistd.h... (cached) yes | |
| checking utime.h usability... yes | |
| checking utime.h presence... yes | |
| checking for utime.h... yes | |
| checking stdalign.h usability... yes | |
| checking stdalign.h presence... yes | |
| checking for stdalign.h... yes | |
| checking errno.h usability... yes | |
| checking errno.h presence... yes | |
| checking for errno.h... yes | |
| checking for inttypes.h... (cached) yes | |
| checking limits.h usability... yes | |
| checking limits.h presence... yes | |
| checking for limits.h... yes | |
| checking locale.h usability... yes | |
| checking locale.h presence... yes | |
| checking for locale.h... yes | |
| checking stdarg.h usability... yes | |
| checking stdarg.h presence... yes | |
| checking for stdarg.h... yes | |
| checking stdbool.h usability... yes | |
| checking stdbool.h presence... yes | |
| checking for stdbool.h... yes | |
| checking for stdint.h... (cached) yes | |
| checking for string.h... (cached) yes | |
| checking whether setjmp.h is POSIX.1 compatible... yes | |
| checking whether sigsetjmp is declared... yes | |
| checking whether siglongjmp is declared... yes | |
| checking for GNU C library with version >= 2... yes | |
| checking return type of signal handlers... void | |
| checking for uint64_t... yes | |
| checking for int64_t... yes | |
| checking for int_fast64_t... yes | |
| checking for pid_t... yes | |
| checking for size_t... yes | |
| checking whether SIZE_MAX is declared... yes | |
| checking for blkcnt_t... yes | |
| checking for type of socket length... socklen_t * | |
| checking for stack_t... yes | |
| checking for intptr_t... yes | |
| checking for uintptr_t... yes | |
| checking whether byte ordering is bigendian... no | |
| checking for an ANSI C-conforming const... yes | |
| checking for /bio/linuxbrew/bin/gcc-5 option to accept ISO C99... none needed | |
| checking for /bio/linuxbrew/bin/gcc-5 option to accept ISO Standard C... (cached) none needed | |
| checking for inline... inline | |
| checking size of int... 4 | |
| checking size of long... 8 | |
| checking size of long long... 8 | |
| checking size of double... 8 | |
| checking size of size_t... 8 | |
| checking size of long double... 16 | |
| checking whether we can compute C Make dependencies... yes, using $(CC) -MM | |
| checking whether /bio/linuxbrew/bin/gcc-5 supports -c -o FILE.lo... yes | |
| checking for /bio/linuxbrew/bin/gcc-5 option to support OpenMP... -fopenmp | |
| checking how to get verbose linking output from /bio/linuxbrew/bin/gfortran... -v | |
| checking for Fortran 77 libraries of /bio/linuxbrew/bin/gfortran... -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../.. -L/bio/linuxbrew/lib -lgfortran -lm -lquadmath | |
| checking how to get verbose linking output from /bio/linuxbrew/bin/gcc-5... -v | |
| checking for C libraries of /bio/linuxbrew/bin/gcc-5... -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../.. -L/bio/linuxbrew/lib -lgcc_s | |
| checking for dummy main to link with Fortran 77 libraries... none | |
| checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore | |
| checking whether /bio/linuxbrew/bin/gfortran appends underscores to external names... yes | |
| checking whether /bio/linuxbrew/bin/gfortran appends extra underscores to external names... no | |
| checking whether mixed C/Fortran code can be run... yes | |
| checking whether /bio/linuxbrew/bin/gfortran and /bio/linuxbrew/bin/gcc-5 agree on int and double... yes | |
| checking whether /bio/linuxbrew/bin/gfortran and /bio/linuxbrew/bin/gcc-5 agree on double complex... yes | |
| checking for /bio/linuxbrew/bin/gfortran option to support OpenMP... -fopenmp | |
| checking whether /bio/linuxbrew/bin/g++-5 accepts -M for generating dependencies... yes | |
| checking for /bio/linuxbrew/bin/g++-5 option to support OpenMP... -fopenmp | |
| checking whether we can compute ObjC Make dependencies... yes, using /bio/linuxbrew/bin/gcc-5 -MM | |
| checking for ObjC runtime library... -lobjc | |
| checking for ObjC runtime style... unknown | |
| checking whether /bio/linuxbrew/bin/gcc-5 accepts -fobjc-exceptions... yes | |
| checking whether C runtime needs -D__NO_MATH_INLINES... no | |
| checking for xmkmf... no | |
| checking whether /bio/linuxbrew/bin/g++-5 supports C++11 features by default... no | |
| checking whether /bio/linuxbrew/bin/g++-5 supports C++11 features with -std=c++11... yes | |
| checking for off_t... yes | |
| checking for working alloca.h... yes | |
| checking for alloca... yes | |
| checking whether alloca is declared... yes | |
| checking whether expm1 exists and is declared... yes | |
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| checking whether va_copy exists and is declared... yes | |
| checking for isblank... yes | |
| checking sunmath.h usability... no | |
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| checking whether access exists and is declared... yes | |
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| checking whether sched_setaffinity exists and is declared... yes | |
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| checking whether utime exists and is declared... yes | |
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| checking for putenv... yes | |
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| checking for vasprintf... yes | |
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| checking for isnan... yes | |
| checking whether isfinite is declared... yes | |
| checking whether isnan is declared... yes | |
| checking whether you have IEEE 754 floating-point arithmetic... yes | |
| checking whether putenv("FOO") can unset an environment variable... yes | |
| checking whether putenv("FOO=") can unset an environment variable... no | |
| checking for nl_langinfo and CODESET... yes | |
| checking for mkdtemp... yes | |
| checking for strdup... yes | |
| checking for strncasecmp... yes | |
| checking whether mkdtemp is declared... yes | |
| checking whether strdup is declared... yes | |
| checking whether strncasecmp is declared... yes | |
| checking for library containing connect... none required | |
| checking for library containing gethostbyname... none required | |
| checking for library containing xdr_string... none required | |
| checking for __setfpucw... no | |
| checking for working calloc... yes | |
| checking for working isfinite... yes | |
| checking for working log1p... yes | |
| checking whether ftell works correctly on files opened for append... yes | |
| checking for working sigaction... yes | |
| checking whether mktime sets errno... no | |
| checking whether mktime works correctly outside 1902-2037... yes | |
| checking complex.h usability... yes | |
| checking complex.h presence... yes | |
| checking for complex.h... yes | |
| checking for double complex... yes | |
| checking whether C99 double complex is supported... yes | |
| checking whether cabs exists and is declared... yes | |
| checking whether carg exists and is declared... yes | |
| checking whether cexp exists and is declared... yes | |
| checking whether clog exists and is declared... yes | |
| checking whether csqrt exists and is declared... yes | |
| checking whether cpow exists and is declared... yes | |
| checking whether ccos exists and is declared... yes | |
| checking whether csin exists and is declared... yes | |
| checking whether ctan exists and is declared... yes | |
| checking whether cacos exists and is declared... yes | |
| checking whether casin exists and is declared... yes | |
| checking whether catan exists and is declared... yes | |
| checking whether ccosh exists and is declared... yes | |
| checking whether csinh exists and is declared... yes | |
| checking whether ctanh exists and is declared... yes | |
| checking whether 'struct tm' includes tm_zone... yes | |
| checking whether 'struct tm' includes tm_gmtoff... yes | |
| checking for dgemm_ in -framework Accelerate... no | |
| checking for dgemm_... no | |
| checking for ATL_xerbla in -latlas... no | |
| checking for dgemm_ in -lblas... no | |
| checking for dgemm_ in -lblas... (cached) no | |
| checking for dgemm_ in -lblas... (cached) no | |
| checking iconv.h usability... yes | |
| checking iconv.h presence... yes | |
| checking for iconv.h... yes | |
| checking for iconv... yes | |
| checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes | |
| checking for iconvlist... no | |
| checking for iconv... yes | |
| checking for iconv declaration... | |
| extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); | |
| checking wchar.h usability... yes | |
| checking wchar.h presence... yes | |
| checking for wchar.h... yes | |
| checking wctype.h usability... yes | |
| checking wctype.h presence... yes | |
| checking for wctype.h... yes | |
| checking whether mbrtowc exists and is declared... yes | |
| checking whether wcrtomb exists and is declared... yes | |
| checking whether wcscoll exists and is declared... yes | |
| checking whether wcsftime exists and is declared... yes | |
| checking whether wcstod exists and is declared... yes | |
| checking whether mbstowcs exists and is declared... yes | |
| checking whether wcstombs exists and is declared... yes | |
| checking whether wctrans exists and is declared... yes | |
| checking whether iswblank exists and is declared... yes | |
| checking whether wctype exists and is declared... yes | |
| checking whether iswctype exists and is declared... yes | |
| checking for wctrans_t... yes | |
| checking for mbstate_t... yes | |
| checking for ICU... no | |
| checking for X... libraries , headers | |
| checking for gethostbyname... yes | |
| checking for connect... yes | |
| checking for remove... yes | |
| checking for shmat... yes | |
| checking for IceConnectionNumber in -lICE... yes | |
| checking X11/Intrinsic.h usability... yes | |
| checking X11/Intrinsic.h presence... yes | |
| checking for X11/Intrinsic.h... yes | |
| checking for XtToolkitInitialize in -lXt... yes | |
| using X11 ... yes | |
| checking for KeySym... yes | |
| checking X11/Xmu/Atoms.h usability... yes | |
| checking X11/Xmu/Atoms.h presence... yes | |
| checking for X11/Xmu/Atoms.h... yes | |
| checking for XmuInternAtom in -lXmu... yes | |
| checking whether pkg-config knows about cairo and pango... yes | |
| checking whether cairo including pango is >= 1.2 and works... yes | |
| checking for tclConfig.sh... no | |
| checking for tclConfig.sh in library (sub)directories... /usr/lib64/tclConfig.sh | |
| checking for tkConfig.sh... no | |
| checking for tkConfig.sh in library (sub)directories... /usr/lib64/tkConfig.sh | |
| checking tcl.h usability... yes | |
| checking tcl.h presence... yes | |
| checking for tcl.h... yes | |
| checking tk.h usability... yes | |
| checking tk.h presence... yes | |
| checking for tk.h... yes | |
| checking whether compiling/linking Tcl/Tk code works... yes | |
| checking for BSD networking... yes | |
| checking if jpeglib version >= 6b... yes | |
| checking for jpeg_destroy_compress in -ljpeg... yes | |
| checking for main in -lz... yes | |
| checking if libpng version >= 1.2.7... yes | |
| checking for png_create_write_struct in -lpng... yes | |
| checking tiffio.h usability... yes | |
| checking tiffio.h presence... yes | |
| checking for tiffio.h... yes | |
| checking for TIFFOpen in -ltiff... yes | |
| checking rpc/types.h usability... yes | |
| checking rpc/types.h presence... yes | |
| checking for rpc/types.h... yes | |
| checking for rpc/xdr.h... yes | |
| checking for XDR support... yes | |
| checking for inflateInit2_ in -lz... yes | |
| checking zlib.h usability... yes | |
| checking zlib.h presence... yes | |
| checking for zlib.h... yes | |
| checking if zlib version >= 1.2.5... yes | |
| checking whether zlib support needs to be compiled... no | |
| checking for BZ2_bzlibVersion in -lbz2... yes | |
| checking bzlib.h usability... yes | |
| checking bzlib.h presence... yes | |
| checking for bzlib.h... yes | |
| checking if bzip2 version >= 1.0.6... yes | |
| checking whether bzip2 support needs to be compiled... no | |
| checking for lzma_version_number in -llzma... yes | |
| checking lzma.h usability... yes | |
| checking lzma.h presence... yes | |
| checking for lzma.h... yes | |
| checking if lzma version >= 5.0.3... yes | |
| checking for pcre_fullinfo in -lpcre... yes | |
| checking pcre.h usability... yes | |
| checking pcre.h presence... yes | |
| checking for pcre.h... yes | |
| checking pcre/pcre.h usability... no | |
| checking pcre/pcre.h presence... no | |
| checking for pcre/pcre.h... no | |
| checking if PCRE version >= 8.10, < 10.0 and has UTF-8 support... yes | |
| checking whether PCRE support needs to be compiled... no | |
| checking for curl-config... /bio/linuxbrew/bin/curl-config | |
| libcurl 7.47.1 | |
| checking if libcurl version >= 7.28.0... yes | |
| checking curl/curl.h usability... yes | |
| checking curl/curl.h presence... yes | |
| checking for curl/curl.h... yes | |
| checking whether leap seconds are treated according to POSIX... yes | |
| checking for inline... inline | |
| checking for sys/time.h... (cached) yes | |
| checking for stdlib.h... (cached) yes | |
| checking for unistd.h... (cached) yes | |
| checking for sys/param.h... (cached) yes | |
| checking for struct stat.st_atim.tv_nsec... yes | |
| checking whether struct stat.st_atim is of type struct timespec... yes | |
| checking for setitimer... yes | |
| checking for special C compiler options needed for large files... no | |
| checking for _FILE_OFFSET_BITS value needed for large files... no | |
| checking for _LARGEFILE_SOURCE value needed for large files... no | |
| checking whether KERN_USRSTACK sysctl is supported... no | |
| checking for visible __lib_stack_end... yes | |
| checking for lpr... lpr | |
| checking for paperconf... false | |
| checking whether we are using the GNU Fortran compiler... yes | |
| checking whether /bio/linuxbrew/bin/gfortran accepts -g... yes | |
| checking whether we are using the GNU Fortran compiler... (cached) yes | |
| checking whether /bio/linuxbrew/bin/gfortran accepts -g... (cached) yes | |
| checking if libtool supports shared libraries... yes | |
| checking whether to build shared libraries... yes | |
| checking whether to build static libraries... no | |
| checking for /bio/linuxbrew/bin/gfortran option to produce PIC... -fPIC | |
| checking if /bio/linuxbrew/bin/gfortran PIC flag -fPIC works... yes | |
| checking if /bio/linuxbrew/bin/gfortran static flag -static works... no | |
| checking if /bio/linuxbrew/bin/gfortran supports -c -o file.o... yes | |
| checking if /bio/linuxbrew/bin/gfortran supports -c -o file.o... (cached) yes | |
| checking whether the /bio/linuxbrew/bin/gfortran linker (/bio/linuxbrew/bin/ld) supports shared libraries... yes | |
| checking dynamic linker characteristics... GNU/Linux ld.so | |
| checking how to hardcode library paths into programs... immediate | |
| checking for Fortran flag to compile .f90 files... none | |
| checking for Fortran flag to compile .f95 files... none | |
| checking for /bio/linuxbrew/bin/gfortran option to support OpenMP... -fopenmp | |
| checking for recommended packages... yes | |
| checking whether NLS is requested... yes | |
| Configuring src/extra/intl directory | |
| checking for a thread-safe mkdir -p... /usr/bin/mkdir -p | |
| checking whether we are using the GNU C Library 2 or newer... yes | |
| checking for ranlib... (cached) ranlib | |
| checking for simple visibility declarations... yes | |
| checking for stdint.h... yes | |
| checking for getpagesize... yes | |
| checking for working mmap... yes | |
| checking whether integer division by zero raises SIGFPE... yes | |
| checking for inttypes.h... yes | |
| checking for unsigned long long int... yes | |
| checking for inttypes.h... (cached) yes | |
| checking whether the inttypes.h PRIxNN macros are broken... no | |
| checking for ld used by /bio/linuxbrew/bin/gcc-5... /bio/linuxbrew/bin/ld | |
| checking if the linker (/bio/linuxbrew/bin/ld) is GNU ld... yes | |
| checking for shared library run path origin... done | |
| checking whether imported symbols can be declared weak... yes | |
| checking for multithread API to use... none | |
| checking argz.h usability... yes | |
| checking argz.h presence... yes | |
| checking for argz.h... yes | |
| checking for inttypes.h... (cached) yes | |
| checking for limits.h... (cached) yes | |
| checking for unistd.h... (cached) yes | |
| checking for sys/param.h... (cached) yes | |
| checking for getcwd... yes | |
| checking for getegid... yes | |
| checking for geteuid... yes | |
| checking for getgid... yes | |
| checking for getuid... yes | |
| checking for mempcpy... (cached) yes | |
| checking for munmap... yes | |
| checking for stpcpy... yes | |
| checking for strcasecmp... yes | |
| checking for strdup... (cached) yes | |
| checking for strtoul... yes | |
| checking for tsearch... yes | |
| checking for argz_count... yes | |
| checking for argz_stringify... yes | |
| checking for argz_next... yes | |
| checking for __fsetlocking... yes | |
| checking whether feof_unlocked is declared... yes | |
| checking whether fgets_unlocked is declared... yes | |
| checking for iconv... (cached) yes | |
| checking for iconv declaration... (cached) | |
| extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); | |
| checking for NL_LOCALE_NAME macro... yes | |
| checking for bison... bison | |
| checking version of bison... 3.0.4, ok | |
| checking for long long int... yes | |
| checking for long double... yes | |
| checking for wchar_t... yes | |
| checking for wint_t... yes | |
| checking for intmax_t... yes | |
| checking whether printf() supports POSIX/XSI format strings... yes | |
| checking whether we are using the GNU C Library 2.1 or newer... yes | |
| checking for stdint.h... (cached) yes | |
| checking for SIZE_MAX... yes | |
| checking for stdint.h... (cached) yes | |
| checking for CFPreferencesCopyAppValue... no | |
| checking for CFLocaleCopyCurrent... no | |
| checking for ptrdiff_t... yes | |
| checking stddef.h usability... yes | |
| checking stddef.h presence... yes | |
| checking for stddef.h... yes | |
| checking for stdlib.h... (cached) yes | |
| checking for string.h... (cached) yes | |
| checking for asprintf... yes | |
| checking for fwprintf... yes | |
| checking for putenv... (cached) yes | |
| checking for setenv... yes | |
| checking for setlocale... yes | |
| checking for snprintf... yes | |
| checking for wcslen... yes | |
| checking whether _snprintf is declared... no | |
| checking whether _snwprintf is declared... no | |
| checking whether getc_unlocked is declared... yes | |
| checking for nl_langinfo and CODESET... (cached) yes | |
| checking for LC_MESSAGES... yes | |
| checking for CFPreferencesCopyAppValue... (cached) no | |
| checking for CFLocaleCopyCurrent... (cached) no | |
| checking whether included gettext is requested... no | |
| checking for GNU gettext in libc... yes | |
| checking whether to use NLS... yes | |
| checking where the gettext function comes from... libc | |
| Finished configuring src/extra/intl directory | |
| using as R_SHELL for scripts ... /bin/sh | |
| configure: creating ./config.status | |
| config.status: creating Makeconf | |
| config.status: creating Makefile | |
| config.status: creating doc/Makefile | |
| config.status: creating doc/html/Makefile | |
| config.status: creating doc/manual/Makefile | |
| config.status: creating etc/Makefile | |
| config.status: creating etc/Makeconf | |
| config.status: creating etc/Renviron | |
| config.status: creating etc/javaconf | |
| config.status: creating etc/ldpaths | |
| config.status: creating m4/Makefile | |
| config.status: creating po/Makefile | |
| config.status: creating share/Makefile | |
| config.status: creating src/Makefile | |
| config.status: creating src/appl/Makefile | |
| config.status: creating src/extra/Makefile | |
| config.status: creating src/extra/blas/Makefile | |
| config.status: creating src/extra/bzip2/Makefile | |
| config.status: creating src/extra/intl/Makefile | |
| config.status: creating src/extra/pcre/Makefile | |
| config.status: creating src/extra/tre/Makefile | |
| config.status: creating src/extra/tzone/Makefile | |
| config.status: creating src/extra/xdr/Makefile | |
| config.status: creating src/extra/xz/Makefile | |
| config.status: creating src/extra/zlib/Makefile | |
| config.status: creating src/include/Makefile | |
| config.status: creating src/include/Rmath.h0 | |
| config.status: creating src/include/R_ext/Makefile | |
| config.status: creating src/library/Recommended/Makefile | |
| config.status: creating src/library/Makefile | |
| config.status: creating src/library/base/DESCRIPTION | |
| config.status: creating src/library/base/Makefile | |
| config.status: creating src/library/compiler/DESCRIPTION | |
| config.status: creating src/library/compiler/Makefile | |
| config.status: creating src/library/datasets/DESCRIPTION | |
| config.status: creating src/library/datasets/Makefile | |
| config.status: creating src/library/graphics/DESCRIPTION | |
| config.status: creating src/library/graphics/Makefile | |
| config.status: creating src/library/graphics/src/Makefile | |
| config.status: creating src/library/grDevices/DESCRIPTION | |
| config.status: creating src/library/grDevices/Makefile | |
| config.status: creating src/library/grDevices/src/Makefile | |
| config.status: creating src/library/grDevices/src/cairo/Makefile | |
| config.status: creating src/library/grid/DESCRIPTION | |
| config.status: creating src/library/grid/Makefile | |
| config.status: creating src/library/grid/src/Makefile | |
| config.status: creating src/library/methods/DESCRIPTION | |
| config.status: creating src/library/methods/Makefile | |
| config.status: creating src/library/methods/src/Makefile | |
| config.status: creating src/library/parallel/DESCRIPTION | |
| config.status: creating src/library/parallel/Makefile | |
| config.status: creating src/library/parallel/src/Makefile | |
| config.status: creating src/library/profile/Makefile | |
| config.status: creating src/library/stats/DESCRIPTION | |
| config.status: creating src/library/stats/Makefile | |
| config.status: creating src/library/stats/src/Makefile | |
| config.status: creating src/library/stats4/DESCRIPTION | |
| config.status: creating src/library/stats4/Makefile | |
| config.status: creating src/library/splines/DESCRIPTION | |
| config.status: creating src/library/splines/Makefile | |
| config.status: creating src/library/splines/src/Makefile | |
| config.status: creating src/library/tcltk/DESCRIPTION | |
| config.status: creating src/library/tcltk/Makefile | |
| config.status: creating src/library/tcltk/src/Makefile | |
| config.status: creating src/library/tools/DESCRIPTION | |
| config.status: creating src/library/tools/Makefile | |
| config.status: creating src/library/tools/src/Makefile | |
| config.status: creating src/library/translations/DESCRIPTION | |
| config.status: creating src/library/translations/Makefile | |
| config.status: creating src/library/utils/DESCRIPTION | |
| config.status: creating src/library/utils/Makefile | |
| config.status: creating src/library/utils/src/Makefile | |
| config.status: creating src/main/Makefile | |
| config.status: creating src/modules/Makefile | |
| config.status: creating src/modules/X11/Makefile | |
| config.status: creating src/modules/internet/Makefile | |
| config.status: creating src/modules/lapack/Makefile | |
| config.status: creating src/nmath/Makefile | |
| config.status: creating src/nmath/standalone/Makefile | |
| config.status: creating src/scripts/Makefile | |
| config.status: creating src/scripts/R.sh | |
| config.status: creating src/scripts/Rcmd | |
| config.status: creating src/scripts/f77_f2c | |
| config.status: creating src/scripts/javareconf | |
| config.status: creating src/scripts/mkinstalldirs | |
| config.status: creating src/scripts/pager | |
| config.status: creating src/scripts/rtags | |
| config.status: creating src/unix/Makefile | |
| config.status: creating tests/Makefile | |
| config.status: creating tests/Embedding/Makefile | |
| config.status: creating tests/Examples/Makefile | |
| config.status: creating tools/Makefile | |
| config.status: creating src/include/config.h | |
| config.status: executing libtool commands | |
| config.status: executing stamp-h commands | |
| R is now configured for x86_64-pc-linux-gnu | |
| Source directory: . | |
| Installation directory: /bio/linuxbrew/Cellar/r/3.2.3 | |
| C compiler: /bio/linuxbrew/bin/gcc-5 -Os -w -pipe -march=core2 -D__ACCELERATE__ | |
| Fortran 77 compiler: /bio/linuxbrew/bin/gfortran -Os -w -pipe -march=core2 | |
| C++ compiler: /bio/linuxbrew/bin/g++-5 -Os -w -pipe -march=core2 -D__ACCELERATE__ | |
| C++ 11 compiler: /bio/linuxbrew/bin/g++-5 -std=c++11 -Os -w -pipe -march=core2 -D__ACCELERATE__ | |
| Fortran 90/95 compiler: /bio/linuxbrew/bin/gfortran -Os -w -pipe -march=core2 | |
| Obj-C compiler: /bio/linuxbrew/bin/gcc-5 -Os -w -pipe -march=core2 -D__ACCELERATE__ -fobjc-exceptions | |
| Interfaces supported: X11, tcltk | |
| External libraries: readline, zlib, bzlib, lzma, PCRE, curl | |
| Additional capabilities: PNG, JPEG, TIFF, NLS, cairo | |
| Options enabled: shared R library, shared BLAS, R profiling, memory profiling | |
| Capabilities skipped: ICU | |
| Options not enabled: | |
| Recommended packages: yes | |
| configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally |
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| 2016-02-25 11:51:07 +1100 | |
| make | |
| make[1]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/m4' | |
| make[1]: Nothing to be done for 'R'. | |
| make[1]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/m4' | |
| make[1]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/tools' | |
| make[1]: Nothing to be done for 'R'. | |
| make[1]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/tools' | |
| make[1]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/doc' | |
| make[2]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/doc/html' | |
| make[2]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/doc/html' | |
| make[2]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/doc/manual' | |
| make[2]: Nothing to be done for 'R'. | |
| make[2]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/doc/manual' | |
| make[1]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/doc' | |
| make[1]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/etc' | |
| make[1]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/etc' | |
| make[1]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/share' | |
| make[1]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/share' | |
| make[1]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src' | |
| make[2]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/scripts' | |
| creating src/scripts/R.fe | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/scripts' | |
| mkdir -p -- ../../bin | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/scripts' | |
| make[2]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/scripts' | |
| make[2]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/include' | |
| mkdir -p -- ../../include | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/include/R_ext' | |
| mkdir -p -- ../../../include/R_ext | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/include/R_ext' | |
| make[2]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/include' | |
| make[2]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra' | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/blas' | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/tre' | |
| make[4]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/blas' | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c blas.f -o blas.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c cmplxblas.f -o cmplxblas.o | |
| make[4]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/tre' | |
| making regcomp.d from regcomp.c | |
| making regerror.d from regerror.c | |
| making regexec.d from regexec.c | |
| making tre-ast.d from tre-ast.c | |
| making tre-compile.d from tre-compile.c | |
| making tre-match-approx.d from tre-match-approx.c | |
| making tre-match-backtrack.d from tre-match-backtrack.c | |
| making tre-match-parallel.d from tre-match-parallel.c | |
| making tre-mem.d from tre-mem.c | |
| making tre-parse.d from tre-parse.c | |
| making tre-stack.d from tre-stack.c | |
| making xmalloc.d from xmalloc.c | |
| make[4]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/tre' | |
| make[4]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/tre' | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c regcomp.c -o regcomp.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c regerror.c -o regerror.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c regexec.c -o regexec.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c tre-ast.c -o tre-ast.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c tre-compile.c -o tre-compile.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c tre-mem.c -o tre-mem.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c tre-parse.c -o tre-parse.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c tre-stack.c -o tre-stack.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c xmalloc.c -o xmalloc.o | |
| rm -f libtre.a | |
| ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o | |
| ranlib libtre.a | |
| make[4]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/tre' | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/tre' | |
| /bio/linuxbrew/bin/gcc-5 -shared -fopenmp -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -o libRblas.so blas.o cmplxblas.o -lgfortran -lm -lquadmath # xerbla.o | |
| make[4]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/blas' | |
| make[4]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/blas' | |
| mkdir -p -- /tmp/r20160225-131672-1lbua0j/R-3.2.3/lib | |
| make[4]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/blas' | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra/blas' | |
| make[2]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/extra' | |
| make[2]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/appl' | |
| making integrate.d from integrate.c | |
| making interv.d from interv.c | |
| making maxcol.d from maxcol.c | |
| making optim.d from optim.c | |
| making pretty.d from pretty.c | |
| making uncmin.d from uncmin.c | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/appl' | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c integrate.c -o integrate.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c interv.c -o interv.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c maxcol.c -o maxcol.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c optim.c -o optim.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pretty.c -o pretty.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c uncmin.c -o uncmin.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dchdc.f -o dchdc.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dpbfa.f -o dpbfa.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dpbsl.f -o dpbsl.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dpoco.f -o dpoco.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dpodi.f -o dpodi.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dpofa.f -o dpofa.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dposl.f -o dposl.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dqrdc.f -o dqrdc.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dqrdc2.f -o dqrdc2.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dqrls.f -o dqrls.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dqrsl.f -o dqrsl.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dqrutl.f -o dqrutl.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dsvdc.f -o dsvdc.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dtrco.f -o dtrco.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dtrsl.f -o dtrsl.o | |
| rm -f libappl.a | |
| ar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o | |
| ranlib libappl.a | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/appl' | |
| make[2]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/appl' | |
| make[2]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/nmath' | |
| making mlutils.d from mlutils.c | |
| making d1mach.d from d1mach.c | |
| making i1mach.d from i1mach.c | |
| making fmax2.d from fmax2.c | |
| making fmin2.d from fmin2.c | |
| making fprec.d from fprec.c | |
| making fround.d from fround.c | |
| making ftrunc.d from ftrunc.c | |
| making sign.d from sign.c | |
| making fsign.d from fsign.c | |
| making imax2.d from imax2.c | |
| making imin2.d from imin2.c | |
| making chebyshev.d from chebyshev.c | |
| making log1p.d from log1p.c | |
| making expm1.d from expm1.c | |
| making lgammacor.d from lgammacor.c | |
| making gammalims.d from gammalims.c | |
| making stirlerr.d from stirlerr.c | |
| making bd0.d from bd0.c | |
| making lgamma.d from lgamma.c | |
| making gamma_cody.d from gamma_cody.c | |
| making gamma.d from gamma.c | |
| making beta.d from beta.c | |
| making lbeta.d from lbeta.c | |
| making polygamma.d from polygamma.c | |
| making cospi.d from cospi.c | |
| making bessel_i.d from bessel_i.c | |
| making bessel_j.d from bessel_j.c | |
| making bessel_k.d from bessel_k.c | |
| making bessel_y.d from bessel_y.c | |
| making choose.d from choose.c | |
| making snorm.d from snorm.c | |
| making sexp.d from sexp.c | |
| making dgamma.d from dgamma.c | |
| making pgamma.d from pgamma.c | |
| making qgamma.d from qgamma.c | |
| making rgamma.d from rgamma.c | |
| making dbeta.d from dbeta.c | |
| making pbeta.d from pbeta.c | |
| making qbeta.d from qbeta.c | |
| making rbeta.d from rbeta.c | |
| making dunif.d from dunif.c | |
| making punif.d from punif.c | |
| making qunif.d from qunif.c | |
| making runif.d from runif.c | |
| making dnorm.d from dnorm.c | |
| making pnorm.d from pnorm.c | |
| making qnorm.d from qnorm.c | |
| making rnorm.d from rnorm.c | |
| making dlnorm.d from dlnorm.c | |
| making plnorm.d from plnorm.c | |
| making qlnorm.d from qlnorm.c | |
| making rlnorm.d from rlnorm.c | |
| making df.d from df.c | |
| making pf.d from pf.c | |
| making qf.d from qf.c | |
| making rf.d from rf.c | |
| making dnf.d from dnf.c | |
| making dt.d from dt.c | |
| making pt.d from pt.c | |
| making qt.d from qt.c | |
| making rt.d from rt.c | |
| making dnt.d from dnt.c | |
| making dchisq.d from dchisq.c | |
| making pchisq.d from pchisq.c | |
| making qchisq.d from qchisq.c | |
| making rchisq.d from rchisq.c | |
| making rnchisq.d from rnchisq.c | |
| making dbinom.d from dbinom.c | |
| making pbinom.d from pbinom.c | |
| making qbinom.d from qbinom.c | |
| making rbinom.d from rbinom.c | |
| making rmultinom.d from rmultinom.c | |
| making dcauchy.d from dcauchy.c | |
| making pcauchy.d from pcauchy.c | |
| making qcauchy.d from qcauchy.c | |
| making rcauchy.d from rcauchy.c | |
| making dexp.d from dexp.c | |
| making pexp.d from pexp.c | |
| making qexp.d from qexp.c | |
| making rexp.d from rexp.c | |
| making dgeom.d from dgeom.c | |
| making pgeom.d from pgeom.c | |
| making qgeom.d from qgeom.c | |
| making rgeom.d from rgeom.c | |
| making dhyper.d from dhyper.c | |
| making phyper.d from phyper.c | |
| making qhyper.d from qhyper.c | |
| making rhyper.d from rhyper.c | |
| making dnbinom.d from dnbinom.c | |
| making pnbinom.d from pnbinom.c | |
| making qnbinom.d from qnbinom.c | |
| making rnbinom.d from rnbinom.c | |
| making dpois.d from dpois.c | |
| making ppois.d from ppois.c | |
| making qpois.d from qpois.c | |
| making rpois.d from rpois.c | |
| making dweibull.d from dweibull.c | |
| making pweibull.d from pweibull.c | |
| making qweibull.d from qweibull.c | |
| making rweibull.d from rweibull.c | |
| making dlogis.d from dlogis.c | |
| making plogis.d from plogis.c | |
| making qlogis.d from qlogis.c | |
| making dnchisq.d from dnchisq.c | |
| making rlogis.d from rlogis.c | |
| making pnchisq.d from pnchisq.c | |
| making qnchisq.d from qnchisq.c | |
| making dnbeta.d from dnbeta.c | |
| making pnbeta.d from pnbeta.c | |
| making qnbeta.d from qnbeta.c | |
| making pnf.d from pnf.c | |
| making pnt.d from pnt.c | |
| making qnf.d from qnf.c | |
| making qnt.d from qnt.c | |
| making ptukey.d from ptukey.c | |
| making qtukey.d from qtukey.c | |
| making toms708.d from toms708.c | |
| making wilcox.d from wilcox.c | |
| making signrank.d from signrank.c | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/nmath' | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c mlutils.c -o mlutils.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c d1mach.c -o d1mach.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c i1mach.c -o i1mach.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c fmax2.c -o fmax2.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c fmin2.c -o fmin2.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c fprec.c -o fprec.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c fround.c -o fround.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c ftrunc.c -o ftrunc.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c sign.c -o sign.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c fsign.c -o fsign.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c imax2.c -o imax2.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c imin2.c -o imin2.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c chebyshev.c -o chebyshev.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c log1p.c -o log1p.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c expm1.c -o expm1.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c lgammacor.c -o lgammacor.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c gammalims.c -o gammalims.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c stirlerr.c -o stirlerr.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c bd0.c -o bd0.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c gamma.c -o gamma.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c lgamma.c -o lgamma.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c gamma_cody.c -o gamma_cody.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c beta.c -o beta.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c lbeta.c -o lbeta.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c polygamma.c -o polygamma.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c cospi.c -o cospi.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c bessel_i.c -o bessel_i.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c bessel_j.c -o bessel_j.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c bessel_k.c -o bessel_k.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c bessel_y.c -o bessel_y.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c choose.c -o choose.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c snorm.c -o snorm.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c sexp.c -o sexp.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dgamma.c -o dgamma.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pgamma.c -o pgamma.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qgamma.c -o qgamma.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rgamma.c -o rgamma.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dbeta.c -o dbeta.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pbeta.c -o pbeta.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qbeta.c -o qbeta.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rbeta.c -o rbeta.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dunif.c -o dunif.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c punif.c -o punif.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qunif.c -o qunif.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c runif.c -o runif.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dnorm.c -o dnorm.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pnorm.c -o pnorm.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qnorm.c -o qnorm.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rnorm.c -o rnorm.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dlnorm.c -o dlnorm.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c plnorm.c -o plnorm.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qlnorm.c -o qlnorm.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rlnorm.c -o rlnorm.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c df.c -o df.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pf.c -o pf.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qf.c -o qf.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rf.c -o rf.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dnf.c -o dnf.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dt.c -o dt.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pt.c -o pt.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qt.c -o qt.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rt.c -o rt.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dnt.c -o dnt.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dchisq.c -o dchisq.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pchisq.c -o pchisq.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qchisq.c -o qchisq.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rchisq.c -o rchisq.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rnchisq.c -o rnchisq.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dbinom.c -o dbinom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pbinom.c -o pbinom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qbinom.c -o qbinom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rbinom.c -o rbinom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rmultinom.c -o rmultinom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dcauchy.c -o dcauchy.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pcauchy.c -o pcauchy.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qcauchy.c -o qcauchy.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rcauchy.c -o rcauchy.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dexp.c -o dexp.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pexp.c -o pexp.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qexp.c -o qexp.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rexp.c -o rexp.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dgeom.c -o dgeom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pgeom.c -o pgeom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qgeom.c -o qgeom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rgeom.c -o rgeom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dhyper.c -o dhyper.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c phyper.c -o phyper.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qhyper.c -o qhyper.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rhyper.c -o rhyper.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dnbinom.c -o dnbinom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pnbinom.c -o pnbinom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qnbinom.c -o qnbinom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rnbinom.c -o rnbinom.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dpois.c -o dpois.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c ppois.c -o ppois.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qpois.c -o qpois.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rpois.c -o rpois.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dweibull.c -o dweibull.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pweibull.c -o pweibull.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qweibull.c -o qweibull.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rweibull.c -o rweibull.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dlogis.c -o dlogis.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c plogis.c -o plogis.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qlogis.c -o qlogis.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rlogis.c -o rlogis.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dnchisq.c -o dnchisq.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pnchisq.c -o pnchisq.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qnchisq.c -o qnchisq.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dnbeta.c -o dnbeta.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pnbeta.c -o pnbeta.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qnbeta.c -o qnbeta.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pnf.c -o pnf.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c pnt.c -o pnt.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qnf.c -o qnf.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qnt.c -o qnt.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c ptukey.c -o ptukey.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qtukey.c -o qtukey.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c toms708.c -o toms708.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c wilcox.c -o wilcox.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c signrank.c -o signrank.o | |
| rm -rf libnmath.a | |
| ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o | |
| ranlib libnmath.a | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/nmath' | |
| make[2]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/nmath' | |
| make[2]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/unix' | |
| config.status: creating src/unix/Makefile | |
| making Rembedded.d from Rembedded.c | |
| making dynload.d from dynload.c | |
| making system.d from system.c | |
| making sys-unix.d from sys-unix.c | |
| making sys-std.d from sys-std.c | |
| making X11.d from X11.c | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/unix' | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c Rembedded.c -o Rembedded.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dynload.c -o dynload.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c system.c -o system.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c sys-unix.c -o sys-unix.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c sys-std.c -o sys-std.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c X11.c -o X11.o | |
| rm -rf libunix.a | |
| ar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o | |
| ranlib libunix.a | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/unix' | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/unix' | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../src/include -I../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -Os -w -pipe -march=core2 -D__ACCELERATE__ -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -DR_HOME='"/tmp/r20160225-131672-1lbua0j/R-3.2.3"' \ | |
| -o Rscript ./Rscript.c | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/unix' | |
| make[2]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/unix' | |
| make[2]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/main' | |
| config.status: creating src/main/Makefile | |
| making CommandLineArgs.d from CommandLineArgs.c | |
| making Rdynload.d from Rdynload.c | |
| making Renviron.d from Renviron.c | |
| making RNG.d from RNG.c | |
| making agrep.d from agrep.c | |
| making apply.d from apply.c | |
| making arithmetic.d from arithmetic.c | |
| making array.d from array.c | |
| making attrib.d from attrib.c | |
| making bind.d from bind.c | |
| making builtin.d from builtin.c | |
| making character.d from character.c | |
| making coerce.d from coerce.c | |
| making colors.d from colors.c | |
| making complex.d from complex.c | |
| making connections.d from connections.c | |
| making context.d from context.c | |
| making cum.d from cum.c | |
| making dcf.d from dcf.c | |
| making datetime.d from datetime.c | |
| making debug.d from debug.c | |
| making deparse.d from deparse.c | |
| making devices.d from devices.c | |
| making dotcode.d from dotcode.c | |
| making dounzip.d from dounzip.c | |
| making dstruct.d from dstruct.c | |
| making duplicate.d from duplicate.c | |
| making edit.d from edit.c | |
| making engine.d from engine.c | |
| making envir.d from envir.c | |
| making errors.d from errors.c | |
| making eval.d from eval.c | |
| making format.d from format.c | |
| making gevents.d from gevents.c | |
| making gram.d from gram.c | |
| making gram-ex.d from gram-ex.c | |
| making graphics.d from graphics.c | |
| making grep.d from grep.c | |
| making identical.d from identical.c | |
| making inlined.d from inlined.c | |
| making inspect.d from inspect.c | |
| making internet.d from internet.c | |
| making iosupport.d from iosupport.c | |
| making lapack.d from lapack.c | |
| making list.d from list.c | |
| making localecharset.d from localecharset.c | |
| making logic.d from logic.c | |
| making main.d from main.c | |
| making mapply.d from mapply.c | |
| making match.d from match.c | |
| making memory.d from memory.c | |
| making names.d from names.c | |
| making objects.d from objects.c | |
| making options.d from options.c | |
| making paste.d from paste.c | |
| making platform.d from platform.c | |
| making plot.d from plot.c | |
| making plot3d.d from plot3d.c | |
| making plotmath.d from plotmath.c | |
| making print.d from print.c | |
| making printarray.d from printarray.c | |
| making printvector.d from printvector.c | |
| making printutils.d from printutils.c | |
| making qsort.d from qsort.c | |
| making random.d from random.c | |
| making raw.d from raw.c | |
| making registration.d from registration.c | |
| making relop.d from relop.c | |
| making rlocale.d from rlocale.c | |
| making saveload.d from saveload.c | |
| making scan.d from scan.c | |
| making seq.d from seq.c | |
| making serialize.d from serialize.c | |
| making sort.d from sort.c | |
| making source.d from source.c | |
| making split.d from split.c | |
| making sprintf.d from sprintf.c | |
| making startup.d from startup.c | |
| making subassign.d from subassign.c | |
| making subscript.d from subscript.c | |
| making subset.d from subset.c | |
| making summary.d from summary.c | |
| making sysutils.d from sysutils.c | |
| making times.d from times.c | |
| making unique.d from unique.c | |
| making util.d from util.c | |
| making version.d from version.c | |
| making g_alab_her.d from g_alab_her.c | |
| making g_cntrlify.d from g_cntrlify.c | |
| making g_fontdb.d from g_fontdb.c | |
| making g_her_glyph.d from g_her_glyph.c | |
| making Rmain.d from Rmain.c | |
| making alloca.d from alloca.c | |
| making mkdtemp.d from mkdtemp.c | |
| making strdup.d from strdup.c | |
| making strncasecmp.d from strncasecmp.c | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/main' | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c CommandLineArgs.c -o CommandLineArgs.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c Rdynload.c -o Rdynload.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c Renviron.c -o Renviron.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c RNG.c -o RNG.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c agrep.c -o agrep.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c apply.c -o apply.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c arithmetic.c -o arithmetic.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c array.c -o array.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c attrib.c -o attrib.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c bind.c -o bind.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c builtin.c -o builtin.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c character.c -o character.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c coerce.c -o coerce.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c colors.c -o colors.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c complex.c -o complex.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c connections.c -o connections.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c context.c -o context.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c cum.c -o cum.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dcf.c -o dcf.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c datetime.c -o datetime.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c debug.c -o debug.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c deparse.c -o deparse.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c devices.c -o devices.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dotcode.c -o dotcode.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dounzip.c -o dounzip.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dstruct.c -o dstruct.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c duplicate.c -o duplicate.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c edit.c -o edit.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c engine.c -o engine.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c envir.c -o envir.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c errors.c -o errors.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c eval.c -o eval.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c format.c -o format.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c gevents.c -o gevents.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c gram.c -o gram.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c gram-ex.c -o gram-ex.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c graphics.c -o graphics.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c grep.c -o grep.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c identical.c -o identical.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c inlined.c -o inlined.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c inspect.c -o inspect.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c internet.c -o internet.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c iosupport.c -o iosupport.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c lapack.c -o lapack.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c list.c -o list.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c localecharset.c -o localecharset.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c logic.c -o logic.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c main.c -o main.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c mapply.c -o mapply.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c match.c -o match.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c memory.c -o memory.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c names.c -o names.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c objects.c -o objects.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c options.c -o options.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c paste.c -o paste.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c platform.c -o platform.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c plot.c -o plot.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c plot3d.c -o plot3d.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c plotmath.c -o plotmath.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c print.c -o print.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c printarray.c -o printarray.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c printvector.c -o printvector.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c printutils.c -o printutils.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c qsort.c -o qsort.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c random.c -o random.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c raw.c -o raw.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c registration.c -o registration.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c relop.c -o relop.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rlocale.c -o rlocale.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c saveload.c -o saveload.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c scan.c -o scan.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c seq.c -o seq.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c serialize.c -o serialize.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c sort.c -o sort.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c source.c -o source.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c split.c -o split.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c sprintf.c -o sprintf.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c startup.c -o startup.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c subassign.c -o subassign.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c subscript.c -o subscript.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c subset.c -o subset.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c summary.c -o summary.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c sysutils.c -o sysutils.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c times.c -o times.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c unique.c -o unique.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c util.c -o util.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c version.c -o version.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c g_alab_her.c -o g_alab_her.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c g_cntrlify.c -o g_cntrlify.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c g_fontdb.c -o g_fontdb.o | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c g_her_glyph.c -o g_her_glyph.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c xxxpr.f -o xxxpr.o | |
| /bio/linuxbrew/bin/gcc-5 -shared -fopenmp -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -L../../lib -lRblas -lgfortran -lm -lquadmath -lreadline -lncurses -lpcre -llzma -lbz2 -lz -lrt -ldl -lm | |
| make[4]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/main' | |
| mkdir -p -- /tmp/r20160225-131672-1lbua0j/R-3.2.3/bin/exec | |
| make[4]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/main' | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/main' | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/main' | |
| /bio/linuxbrew/bin/gcc-5 -I../../src/extra -I. -I../../src/include -I../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c Rmain.c -o Rmain.o | |
| /bio/linuxbrew/bin/gcc-5 -Wl,--export-dynamic -fopenmp -L../../lib -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -o R.bin Rmain.o -lR -lRblas | |
| make[4]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/main' | |
| make[4]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/main' | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/main' | |
| make[2]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/main' | |
| make[2]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules' | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/internet' | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/lapack' | |
| make[3]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/X11' | |
| making Rhttpd.d from Rhttpd.c | |
| making Lapack.d from Lapack.c | |
| making Rsock.d from Rsock.c | |
| making devX11.d from devX11.c | |
| making internet.d from internet.c | |
| making rotated.d from rotated.c | |
| making libcurl.d from libcurl.c | |
| making nanoftp.d from nanoftp.c | |
| making rbitmap.d from rbitmap.c | |
| making nanohttp.d from nanohttp.c | |
| making sock.d from sock.c | |
| making sockconn.d from sockconn.c | |
| make[4]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/lapack' | |
| /bio/linuxbrew/bin/gfortran -fpic -Os -w -pipe -march=core2 -ffloat-store -c dlamch.f -o dlamch.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c dlapack.f -o dlapack.o | |
| /bio/linuxbrew/bin/gfortran -fopenmp -fpic -Os -w -pipe -march=core2 -c cmplx.f -o cmplx.o | |
| make[4]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/internet' | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c Rsock.c -o Rsock.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c internet.c -o internet.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c libcurl.c -o libcurl.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c nanoftp.c -o nanoftp.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c nanohttp.c -o nanohttp.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c sock.c -o sock.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -c sockconn.c -o sockconn.o | |
| make[4]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/X11' | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/harfbuzz/1.1.3/include/harfbuzz -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/cairo/1.14.6_1/include/cairo -I/bio/linuxbrew/Cellar/glib/2.46.2/include/glib-2.0 -I/bio/linuxbrew/Cellar/glib/2.46.2/lib/glib-2.0/include -I/bio/linuxbrew/Cellar/pixman/0.34.0/include/pixman-1 -I/bio/linuxbrew/Cellar/fontconfig/2.11.1_2/include -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -I../../../src/library/grDevices/src/cairo -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c devX11.c -o devX11.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/harfbuzz/1.1.3/include/harfbuzz -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/cairo/1.14.6_1/include/cairo -I/bio/linuxbrew/Cellar/glib/2.46.2/include/glib-2.0 -I/bio/linuxbrew/Cellar/glib/2.46.2/lib/glib-2.0/include -I/bio/linuxbrew/Cellar/pixman/0.34.0/include/pixman-1 -I/bio/linuxbrew/Cellar/fontconfig/2.11.1_2/include -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -I../../../src/library/grDevices/src/cairo -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rotated.c -o rotated.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/harfbuzz/1.1.3/include/harfbuzz -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/cairo/1.14.6_1/include/cairo -I/bio/linuxbrew/Cellar/glib/2.46.2/include/glib-2.0 -I/bio/linuxbrew/Cellar/glib/2.46.2/lib/glib-2.0/include -I/bio/linuxbrew/Cellar/pixman/0.34.0/include/pixman-1 -I/bio/linuxbrew/Cellar/fontconfig/2.11.1_2/include -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -I../../../src/library/grDevices/src/cairo -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rbitmap.c -o rbitmap.o | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/harfbuzz/1.1.3/include/harfbuzz -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/cairo/1.14.6_1/include/cairo -I/bio/linuxbrew/Cellar/glib/2.46.2/include/glib-2.0 -I/bio/linuxbrew/Cellar/glib/2.46.2/lib/glib-2.0/include -I/bio/linuxbrew/Cellar/pixman/0.34.0/include/pixman-1 -I/bio/linuxbrew/Cellar/fontconfig/2.11.1_2/include -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -I../../../src/library/grDevices/src/cairo -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c dataentry.c -o dataentry.o | |
| In file included from devX11.c:72:0: | |
| devX11.h:64:26: fatal error: cairo-xlib.h: No such file or directory | |
| compilation terminated. | |
| ../../../Makeconf:118: recipe for target 'devX11.o' failed | |
| make[4]: *** [devX11.o] Error 1 | |
| make[4]: *** Waiting for unfinished jobs.... | |
| /bio/linuxbrew/bin/gcc-5 -shared -L../../../lib -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -L/bio/linuxbrew/Cellar/curl/7.47.1/lib -lcurl -lR | |
| make[5]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/internet' | |
| mkdir -p -- /tmp/r20160225-131672-1lbua0j/R-3.2.3/modules | |
| make[5]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/internet' | |
| make[4]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/internet' | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/internet' | |
| make[4]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/X11' | |
| Makefile:49: recipe for target 'R' failed | |
| make[3]: *** [R] Error 2 | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/X11' | |
| Makefile:28: recipe for target 'make.X11' failed | |
| make[2]: *** [make.X11] Error 2 | |
| make[2]: *** Waiting for unfinished jobs.... | |
| /bio/linuxbrew/bin/gcc-5 -shared -fopenmp -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -o libRlapack.so dlamch.o dlapack.o cmplx.o -L../../../lib -lRblas -lgfortran -lm -lquadmath | |
| make[4]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/lapack' | |
| make[4]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/lapack' | |
| /bio/linuxbrew/bin/gcc-5 -I. -I../../../src/include -I../../../src/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -DHAVE_CONFIG_H -fopenmp -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c Lapack.c -o Lapack.o | |
| /bio/linuxbrew/bin/gcc-5 -shared -L../../../lib -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -o lapack.so Lapack.o -lR -L../../../lib -lRlapack -L../../../lib -lRblas -lgfortran -lm -lquadmath | |
| make[5]: Entering directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/lapack' | |
| /tmp/r20160225-131672-1lbua0j/R-3.2.3/lib/libRlapack.so is unchanged | |
| make[5]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/lapack' | |
| make[4]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/lapack' | |
| make[3]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules/lapack' | |
| make[2]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src/modules' | |
| Makefile:28: recipe for target 'R' failed | |
| make[1]: *** [R] Error 1 | |
| make[1]: Leaving directory '/tmp/r20160225-131672-1lbua0j/R-3.2.3/src' | |
| Makefile:60: recipe for target 'R' failed | |
| make: *** [R] Error 1 | |
| HOMEBREW_VERSION: 0.9.5 | |
| ORIGIN: https://github.com/Homebrew/linuxbrew | |
| HEAD: d531921761cd475ed991a788a9d2dde33127e64e | |
| Last commit: 6 hours ago | |
| HOMEBREW_PREFIX: /bio/linuxbrew | |
| HOMEBREW_REPOSITORY: /bio/linuxbrew | |
| HOMEBREW_CELLAR: /bio/linuxbrew/Cellar | |
| HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com | |
| CPU: 72-core 64-bit haswell | |
| Kernel: Linux 3.10.0-327.4.5.el7.x86_64 x86_64 GNU/Linux | |
| OS: Red Hat Enterprise Linux Server release 7.2 (Maipo) | |
| Codename: Maipo | |
| OS glibc: 2.17 | |
| OS gcc: 4.8.5 | |
| Linuxbrew glibc: N/A | |
| Linuxbrew gcc: 5.3.0 | |
| Clang: N/A | |
| X11: 2.7.8 => /usr | |
| System Ruby: 2.2.2 => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Perl: /usr/bin/perl | |
| Python: /bio/linuxbrew/bin/python => /bio/linuxbrew/Cellar/python/2.7.11/bin/python2.7 | |
| Ruby: /bio/linuxbrew/bin/ruby => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Java: openjdk version "1.8.0_71" | |
| CC: /bio/linuxbrew/bin/gcc-5 => /bio/linuxbrew/Cellar/gcc/5.3.0/bin/gcc-5 | |
| CXX: /bio/linuxbrew/bin/g++-5 => /bio/linuxbrew/Cellar/gcc/5.3.0/bin/g++-5 | |
| OBJC: /bio/linuxbrew/bin/gcc-5 | |
| OBJCXX: /bio/linuxbrew/bin/g++-5 | |
| CFLAGS: -Os -w -pipe -march=core2 -D__ACCELERATE__ | |
| CXXFLAGS: -Os -w -pipe -march=core2 -D__ACCELERATE__ | |
| CPPFLAGS: -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include | |
| LDFLAGS: -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib | |
| MAKEFLAGS: -j72 | |
| CMAKE_PREFIX_PATH: /bio/linuxbrew | |
| PKG_CONFIG_LIBDIR: /bio/linuxbrew/lib/pkgconfig:/bio/linuxbrew/share/pkgconfig | |
| HOMEBREW_BUILD_FROM_SOURCE: 1 | |
| PATH: /home/tseemann/perl5/bin:/bio/perl5/bin:/bio/linuxbrew/bin:/bio/linuxbrew/sbin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bio/sw/hierBAPS:/bio/sw/brat:/bio/sw/mauve:/bio/sw/splitstree4:/bio/sw/vbc/fqa-tools:/bio/sw/vbc/misc:/bio/sw/MUMmer:/bio/sw/tablet:/home/tseemann/git/wombac/bin:/home/tseemann/git/snippy/bin:/home/tseemann/git/barrnap/bin:/home/tseemann/git/nullarbor/bin:/home/tseemann/git/prokka/bin:/home/tseemann/git/mlst/bin:/home/tseemann/git/abricate/bin:/home/tseemann/git/mdu-tools/bin:/usr/local/sbin:/usr/sbin:/home/tseemann/.local/bin:/home/tseemann/bin:/bio/linuxbrew/Library/ENV/scm |
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| This file contains any messages produced by compilers while | |
| running configure, to aid debugging if configure makes a mistake. | |
| It was created by R configure 3.2.3, which was | |
| generated by GNU Autoconf 2.69. Invocation command line was | |
| $ ./configure --prefix=/bio/linuxbrew/Cellar/r/3.2.3 --with-libintl-prefix=/bio/linuxbrew/opt/gettext --enable-memory-profiling --libdir=/bio/linuxbrew/Cellar/r/3.2.3/lib --enable-R-shlib --with-blas=-framework Accelerate --with-lapack | |
| ## --------- ## | |
| ## Platform. ## | |
| ## --------- ## | |
| hostname = 526080-s598783.unimelb.edu.au | |
| uname -m = x86_64 | |
| uname -r = 3.10.0-327.4.5.el7.x86_64 | |
| uname -s = Linux | |
| uname -v = #1 SMP Thu Jan 21 04:10:29 EST 2016 | |
| /usr/bin/uname -p = x86_64 | |
| /bin/uname -X = unknown | |
| /bin/arch = x86_64 | |
| /usr/bin/arch -k = unknown | |
| /usr/convex/getsysinfo = unknown | |
| /usr/bin/hostinfo = unknown | |
| /bin/machine = unknown | |
| /usr/bin/oslevel = unknown | |
| /bin/universe = unknown | |
| PATH: /home/tseemann/perl5/bin | |
| PATH: /bio/perl5/bin | |
| PATH: /bio/linuxbrew/bin | |
| PATH: /bio/linuxbrew/sbin | |
| PATH: /usr/lib64/qt-3.3/bin | |
| PATH: /usr/local/bin | |
| PATH: /usr/bin | |
| PATH: /bio/sw/hierBAPS | |
| PATH: /bio/sw/brat | |
| PATH: /bio/sw/mauve | |
| PATH: /bio/sw/splitstree4 | |
| PATH: /bio/sw/vbc/fqa-tools | |
| PATH: /bio/sw/vbc/misc | |
| PATH: /bio/sw/MUMmer | |
| PATH: /bio/sw/tablet | |
| PATH: /home/tseemann/git/wombac/bin | |
| PATH: /home/tseemann/git/snippy/bin | |
| PATH: /home/tseemann/git/barrnap/bin | |
| PATH: /home/tseemann/git/nullarbor/bin | |
| PATH: /home/tseemann/git/prokka/bin | |
| PATH: /home/tseemann/git/mlst/bin | |
| PATH: /home/tseemann/git/abricate/bin | |
| PATH: /home/tseemann/git/mdu-tools/bin | |
| PATH: /usr/local/sbin | |
| PATH: /usr/sbin | |
| PATH: /home/tseemann/.local/bin | |
| PATH: /home/tseemann/bin | |
| PATH: /bio/linuxbrew/Library/ENV/scm | |
| ## ----------- ## | |
| ## Core tests. ## | |
| ## ----------- ## | |
| configure:3689: checking build system type | |
| configure:3703: result: x86_64-pc-linux-gnu | |
| configure:3723: checking host system type | |
| configure:3736: result: x86_64-pc-linux-gnu | |
| configure:4486: checking for pwd | |
| configure:4504: found /usr/bin/pwd | |
| configure:4517: result: /usr/bin/pwd | |
| configure:4525: checking whether builddir is srcdir | |
| configure:4533: result: yes | |
| configure:4538: checking for working aclocal | |
| configure:4542: result: found | |
| configure:4551: checking for working autoconf | |
| configure:4555: result: found | |
| configure:4564: checking for working automake | |
| configure:4568: result: found | |
| configure:4577: checking for working autoheader | |
| configure:4581: result: found | |
| configure:4594: checking for gawk | |
| configure:4610: found /usr/bin/gawk | |
| configure:4621: result: gawk | |
| configure:4632: checking whether ln -s works | |
| configure:4636: result: yes | |
| configure:4647: checking for bison | |
| configure:4663: found /bio/linuxbrew/bin/bison | |
| configure:4674: result: bison -y | |
| configure:4690: checking for ar | |
| configure:4706: found /bio/linuxbrew/bin/ar | |
| configure:4717: result: ar | |
| configure:4745: checking for a BSD-compatible install | |
| configure:4813: result: /usr/bin/install -c | |
| configure:4848: checking for sed | |
| configure:4867: found /bio/linuxbrew/bin/sed | |
| configure:4879: result: /bio/linuxbrew/bin/sed | |
| configure:4897: checking for which | |
| configure:4915: found /usr/bin/which | |
| configure:4927: result: /usr/bin/which | |
| configure:4947: checking for less | |
| configure:4965: found /usr/bin/less | |
| configure:4977: result: /usr/bin/less | |
| configure:5000: checking for gtar | |
| configure:5018: found /usr/bin/gtar | |
| configure:5030: result: /usr/bin/gtar | |
| configure:5052: checking for tex | |
| configure:5070: found /usr/bin/tex | |
| configure:5082: result: /usr/bin/tex | |
| configure:5097: checking for pdftex | |
| configure:5115: found /usr/bin/pdftex | |
| configure:5127: result: /usr/bin/pdftex | |
| configure:5147: checking for pdflatex | |
| configure:5165: found /usr/bin/pdflatex | |
| configure:5177: result: /usr/bin/pdflatex | |
| configure:5197: checking for makeindex | |
| configure:5215: found /usr/bin/makeindex | |
| configure:5227: result: /usr/bin/makeindex | |
| configure:5242: checking for texi2any | |
| configure:5260: found /bio/linuxbrew/bin/texi2any | |
| configure:5272: result: /bio/linuxbrew/bin/texi2any | |
| configure:5284: checking whether texi2any version is at least 5.1 | |
| configure:5306: result: yes | |
| configure:5313: checking for ginstall-info | |
| configure:5346: result: no | |
| configure:5313: checking for install-info | |
| configure:5331: found /bio/linuxbrew/bin/install-info | |
| configure:5343: result: /bio/linuxbrew/bin/install-info | |
| configure:5375: checking for texi2dvi | |
| configure:5393: found /bio/linuxbrew/bin/texi2dvi | |
| configure:5405: result: /bio/linuxbrew/bin/texi2dvi | |
| configure:5425: checking for kpsewhich | |
| configure:5443: found /usr/bin/kpsewhich | |
| configure:5455: result: /usr/bin/kpsewhich | |
| configure:5467: checking for latex inconsolata package | |
| configure:5483: result: missing | |
| configure:5486: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally | |
| configure:5500: checking for unzip | |
| configure:5518: found /bio/linuxbrew/bin/unzip | |
| configure:5530: result: /bio/linuxbrew/bin/unzip | |
| configure:5546: checking for zip | |
| configure:5564: found /usr/bin/zip | |
| configure:5576: result: /usr/bin/zip | |
| configure:5592: checking for gzip | |
| configure:5610: found /usr/bin/gzip | |
| configure:5622: result: /usr/bin/gzip | |
| configure:5638: checking for bzip2 | |
| configure:5656: found /bio/linuxbrew/bin/bzip2 | |
| configure:5668: result: /bio/linuxbrew/bin/bzip2 | |
| configure:5686: checking for firefox | |
| configure:5704: found /usr/bin/firefox | |
| configure:5716: result: /usr/bin/firefox | |
| configure:5733: result: using default browser ... /usr/bin/firefox | |
| configure:5743: checking for acroread | |
| configure:5776: result: no | |
| configure:5743: checking for acroread4 | |
| configure:5776: result: no | |
| configure:5743: checking for xdg-open | |
| configure:5761: found /usr/bin/xdg-open | |
| configure:5773: result: /usr/bin/xdg-open | |
| configure:5794: checking for notangle | |
| configure:5825: result: false | |
| configure:5836: checking for realpath | |
| configure:5854: found /usr/bin/realpath | |
| configure:5867: result: /usr/bin/realpath | |
| configure:5880: checking for pkg-config | |
| configure:5899: found /bio/linuxbrew/bin/pkg-config | |
| configure:5911: result: /bio/linuxbrew/bin/pkg-config | |
| configure:5968: checking for gcc | |
| configure:5995: result: /bio/linuxbrew/bin/gcc-5 | |
| configure:6224: checking for C compiler version | |
| configure:6233: /bio/linuxbrew/bin/gcc-5 --version >&5 | |
| gcc-5 (Homebrew gcc 5.3.0) 5.3.0 | |
| Copyright (C) 2015 Free Software Foundation, Inc. | |
| This is free software; see the source for copying conditions. There is NO | |
| warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. | |
| configure:6244: $? = 0 | |
| configure:6233: /bio/linuxbrew/bin/gcc-5 -v >&5 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| COLLECT_GCC=/bio/linuxbrew/bin/gcc-5 | |
| COLLECT_LTO_WRAPPER=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper | |
| Target: x86_64-unknown-linux-gnu | |
| Configured with: ../configure --prefix=/bio/linuxbrew/Cellar/gcc/5.3.0 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/bio/linuxbrew/opt/gmp --with-mpfr=/bio/linuxbrew/opt/mpfr --with-mpc=/bio/linuxbrew/opt/libmpc --with-isl=/bio/linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| configure:6244: $? = 0 | |
| configure:6233: /bio/linuxbrew/bin/gcc-5 -V >&5 | |
| gcc-5: error: unrecognized command line option '-V' | |
| gcc-5: fatal error: no input files | |
| compilation terminated. | |
| configure:6244: $? = 1 | |
| configure:6233: /bio/linuxbrew/bin/gcc-5 -qversion >&5 | |
| gcc-5: error: unrecognized command line option '-qversion' | |
| gcc-5: fatal error: no input files | |
| compilation terminated. | |
| configure:6244: $? = 1 | |
| configure:6264: checking whether the C compiler works | |
| configure:6286: /bio/linuxbrew/bin/gcc-5 -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c >&5 | |
| configure:6290: $? = 0 | |
| configure:6338: result: yes | |
| configure:6341: checking for C compiler default output file name | |
| configure:6343: result: a.out | |
| configure:6349: checking for suffix of executables | |
| configure:6356: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c >&5 | |
| configure:6360: $? = 0 | |
| configure:6382: result: | |
| configure:6404: checking whether we are cross compiling | |
| configure:6412: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c >&5 | |
| configure:6416: $? = 0 | |
| configure:6423: ./conftest | |
| configure:6427: $? = 0 | |
| configure:6442: result: no | |
| configure:6447: checking for suffix of object files | |
| configure:6469: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:6473: $? = 0 | |
| configure:6494: result: o | |
| configure:6498: checking whether we are using the GNU C compiler | |
| configure:6517: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:6517: $? = 0 | |
| configure:6526: result: yes | |
| configure:6535: checking whether /bio/linuxbrew/bin/gcc-5 accepts -g | |
| configure:6555: /bio/linuxbrew/bin/gcc-5 -c -g -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:6555: $? = 0 | |
| configure:6596: result: yes | |
| configure:6613: checking for /bio/linuxbrew/bin/gcc-5 option to accept ISO C89 | |
| configure:6676: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:6676: $? = 0 | |
| configure:6689: result: none needed | |
| configure:6716: checking how to run the C preprocessor | |
| configure:6747: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:6747: $? = 0 | |
| configure:6761: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| conftest.c:17:28: fatal error: ac_nonexistent.h: No such file or directory | |
| compilation terminated. | |
| configure:6761: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | /* end confdefs.h. */ | |
| | #include <ac_nonexistent.h> | |
| configure:6786: result: /bio/linuxbrew/bin/gcc-5 -E | |
| configure:6806: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:6806: $? = 0 | |
| configure:6820: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| conftest.c:17:28: fatal error: ac_nonexistent.h: No such file or directory | |
| compilation terminated. | |
| configure:6820: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | /* end confdefs.h. */ | |
| | #include <ac_nonexistent.h> | |
| configure:6849: checking for grep that handles long lines and -e | |
| configure:6907: result: /usr/bin/grep | |
| configure:6912: checking for egrep | |
| configure:6974: result: /usr/bin/grep -E | |
| configure:6980: checking whether /bio/linuxbrew/bin/gcc-5 needs -traditional | |
| configure:7014: result: no | |
| configure:7026: checking how to run the C preprocessor | |
| configure:7096: result: /bio/linuxbrew/bin/gcc-5 -E | |
| configure:7116: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:7116: $? = 0 | |
| configure:7130: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| conftest.c:17:28: fatal error: ac_nonexistent.h: No such file or directory | |
| compilation terminated. | |
| configure:7130: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | /* end confdefs.h. */ | |
| | #include <ac_nonexistent.h> | |
| configure:7202: result: defining F77 to be /bio/linuxbrew/bin/gfortran | |
| configure:7374: checking for Fortran 77 compiler version | |
| configure:7383: /bio/linuxbrew/bin/gfortran --version >&5 | |
| GNU Fortran (Homebrew gcc 5.3.0) 5.3.0 | |
| Copyright (C) 2015 Free Software Foundation, Inc. | |
| GNU Fortran comes with NO WARRANTY, to the extent permitted by law. | |
| You may redistribute copies of GNU Fortran | |
| under the terms of the GNU General Public License. | |
| For more information about these matters, see the file named COPYING | |
| configure:7394: $? = 0 | |
| configure:7383: /bio/linuxbrew/bin/gfortran -v >&5 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| COLLECT_GCC=/bio/linuxbrew/bin/gfortran | |
| COLLECT_LTO_WRAPPER=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper | |
| Target: x86_64-unknown-linux-gnu | |
| Configured with: ../configure --prefix=/bio/linuxbrew/Cellar/gcc/5.3.0 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/bio/linuxbrew/opt/gmp --with-mpfr=/bio/linuxbrew/opt/mpfr --with-mpc=/bio/linuxbrew/opt/libmpc --with-isl=/bio/linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| configure:7394: $? = 0 | |
| configure:7383: /bio/linuxbrew/bin/gfortran -V >&5 | |
| gfortran: error: unrecognized command line option '-V' | |
| gfortran: fatal error: no input files | |
| compilation terminated. | |
| configure:7394: $? = 1 | |
| configure:7383: /bio/linuxbrew/bin/gfortran -qversion >&5 | |
| gfortran: error: unrecognized command line option '-qversion' | |
| gfortran: fatal error: no input files | |
| compilation terminated. | |
| configure:7394: $? = 1 | |
| configure:7403: checking whether we are using the GNU Fortran 77 compiler | |
| configure:7416: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 conftest.F >&5 | |
| configure:7416: $? = 0 | |
| configure:7425: result: yes | |
| configure:7431: checking whether /bio/linuxbrew/bin/gfortran accepts -g | |
| configure:7442: /bio/linuxbrew/bin/gfortran -c -g conftest.f >&5 | |
| configure:7442: $? = 0 | |
| configure:7450: result: yes | |
| configure:7595: checking for C++ compiler version | |
| configure:7604: /bio/linuxbrew/bin/g++-5 --version >&5 | |
| g++-5 (Homebrew gcc 5.3.0) 5.3.0 | |
| Copyright (C) 2015 Free Software Foundation, Inc. | |
| This is free software; see the source for copying conditions. There is NO | |
| warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. | |
| configure:7615: $? = 0 | |
| configure:7604: /bio/linuxbrew/bin/g++-5 -v >&5 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| COLLECT_GCC=/bio/linuxbrew/bin/g++-5 | |
| COLLECT_LTO_WRAPPER=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper | |
| Target: x86_64-unknown-linux-gnu | |
| Configured with: ../configure --prefix=/bio/linuxbrew/Cellar/gcc/5.3.0 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/bio/linuxbrew/opt/gmp --with-mpfr=/bio/linuxbrew/opt/mpfr --with-mpc=/bio/linuxbrew/opt/libmpc --with-isl=/bio/linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| configure:7615: $? = 0 | |
| configure:7604: /bio/linuxbrew/bin/g++-5 -V >&5 | |
| g++-5: error: unrecognized command line option '-V' | |
| g++-5: fatal error: no input files | |
| compilation terminated. | |
| configure:7615: $? = 1 | |
| configure:7604: /bio/linuxbrew/bin/g++-5 -qversion >&5 | |
| g++-5: error: unrecognized command line option '-qversion' | |
| g++-5: fatal error: no input files | |
| compilation terminated. | |
| configure:7615: $? = 1 | |
| configure:7619: checking whether we are using the GNU C++ compiler | |
| configure:7638: /bio/linuxbrew/bin/g++-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.cpp >&5 | |
| configure:7638: $? = 0 | |
| configure:7647: result: yes | |
| configure:7656: checking whether /bio/linuxbrew/bin/g++-5 accepts -g | |
| configure:7676: /bio/linuxbrew/bin/g++-5 -c -g -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.cpp >&5 | |
| configure:7676: $? = 0 | |
| configure:7717: result: yes | |
| configure:7745: checking how to run the C++ preprocessor | |
| configure:7772: /bio/linuxbrew/bin/g++-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.cpp | |
| configure:7772: $? = 0 | |
| configure:7786: /bio/linuxbrew/bin/g++-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.cpp | |
| conftest.cpp:17:28: fatal error: ac_nonexistent.h: No such file or directory | |
| compilation terminated. | |
| configure:7786: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | /* end confdefs.h. */ | |
| | #include <ac_nonexistent.h> | |
| configure:7811: result: /bio/linuxbrew/bin/g++-5 -E | |
| configure:7831: /bio/linuxbrew/bin/g++-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.cpp | |
| configure:7831: $? = 0 | |
| configure:7845: /bio/linuxbrew/bin/g++-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.cpp | |
| conftest.cpp:17:28: fatal error: ac_nonexistent.h: No such file or directory | |
| compilation terminated. | |
| configure:7845: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | /* end confdefs.h. */ | |
| | #include <ac_nonexistent.h> | |
| configure:7879: checking whether __attribute__((visibility())) is supported | |
| configure:7890: /bio/linuxbrew/bin/gcc-5 -Werror -S conftest.c -o conftest.s 1>&5 | |
| configure:7893: $? = 0 | |
| configure:7902: result: yes | |
| configure:7913: checking whether /bio/linuxbrew/bin/gcc-5 accepts -fvisibility | |
| configure:7929: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fvisibility=hidden -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:7929: $? = 0 | |
| configure:7936: result: yes | |
| configure:7961: checking whether /bio/linuxbrew/bin/gfortran accepts -fvisibility | |
| configure:7971: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 -fvisibility=hidden conftest.f >&5 | |
| configure:7971: $? = 0 | |
| configure:7978: result: yes | |
| configure:8001: checking for ANSI C header files | |
| configure:8021: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:8021: $? = 0 | |
| configure:8094: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c >&5 | |
| configure:8094: $? = 0 | |
| configure:8094: ./conftest | |
| configure:8094: $? = 0 | |
| configure:8105: result: yes | |
| configure:8118: checking for sys/types.h | |
| configure:8118: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:8118: $? = 0 | |
| configure:8118: result: yes | |
| configure:8118: checking for sys/stat.h | |
| configure:8118: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:8118: $? = 0 | |
| configure:8118: result: yes | |
| configure:8118: checking for stdlib.h | |
| configure:8118: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:8118: $? = 0 | |
| configure:8118: result: yes | |
| configure:8118: checking for string.h | |
| configure:8118: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:8118: $? = 0 | |
| configure:8118: result: yes | |
| configure:8118: checking for memory.h | |
| configure:8118: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:8118: $? = 0 | |
| configure:8118: result: yes | |
| configure:8118: checking for strings.h | |
| configure:8118: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:8118: $? = 0 | |
| configure:8118: result: yes | |
| configure:8118: checking for inttypes.h | |
| configure:8118: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:8118: $? = 0 | |
| configure:8118: result: yes | |
| configure:8118: checking for stdint.h | |
| configure:8118: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:8118: $? = 0 | |
| configure:8118: result: yes | |
| configure:8118: checking for unistd.h | |
| configure:8118: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:8118: $? = 0 | |
| configure:8118: result: yes | |
| configure:8131: checking minix/config.h usability | |
| configure:8131: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c:61:26: fatal error: minix/config.h: No such file or directory | |
| compilation terminated. | |
| configure:8131: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | #include <minix/config.h> | |
| configure:8131: result: no | |
| configure:8131: checking minix/config.h presence | |
| configure:8131: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| conftest.c:28:26: fatal error: minix/config.h: No such file or directory | |
| compilation terminated. | |
| configure:8131: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <minix/config.h> | |
| configure:8131: result: no | |
| configure:8131: checking for minix/config.h | |
| configure:8131: result: no | |
| configure:8152: checking whether it is safe to define __EXTENSIONS__ | |
| configure:8170: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:8170: $? = 0 | |
| configure:8177: result: yes | |
| configure:8299: checking for Objective C compiler version | |
| configure:8308: /bio/linuxbrew/bin/gcc-5 --version >&5 | |
| gcc-5 (Homebrew gcc 5.3.0) 5.3.0 | |
| Copyright (C) 2015 Free Software Foundation, Inc. | |
| This is free software; see the source for copying conditions. There is NO | |
| warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. | |
| configure:8319: $? = 0 | |
| configure:8308: /bio/linuxbrew/bin/gcc-5 -v >&5 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| COLLECT_GCC=/bio/linuxbrew/bin/gcc-5 | |
| COLLECT_LTO_WRAPPER=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper | |
| Target: x86_64-unknown-linux-gnu | |
| Configured with: ../configure --prefix=/bio/linuxbrew/Cellar/gcc/5.3.0 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/bio/linuxbrew/opt/gmp --with-mpfr=/bio/linuxbrew/opt/mpfr --with-mpc=/bio/linuxbrew/opt/libmpc --with-isl=/bio/linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| configure:8319: $? = 0 | |
| configure:8308: /bio/linuxbrew/bin/gcc-5 -V >&5 | |
| gcc-5: error: unrecognized command line option '-V' | |
| gcc-5: fatal error: no input files | |
| compilation terminated. | |
| configure:8319: $? = 1 | |
| configure:8308: /bio/linuxbrew/bin/gcc-5 -qversion >&5 | |
| gcc-5: error: unrecognized command line option '-qversion' | |
| gcc-5: fatal error: no input files | |
| compilation terminated. | |
| configure:8319: $? = 1 | |
| configure:8323: checking whether we are using the GNU Objective C compiler | |
| configure:8342: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.m >&5 | |
| configure:8342: $? = 0 | |
| configure:8351: result: yes | |
| configure:8360: checking whether /bio/linuxbrew/bin/gcc-5 accepts -g | |
| configure:8380: /bio/linuxbrew/bin/gcc-5 -c -g -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.m >&5 | |
| configure:8380: $? = 0 | |
| configure:8421: result: yes | |
| configure:8480: checking for Objective C++ compiler | |
| configure:8486: result: trying some possibilities | |
| configure:8489: checking whether /bio/linuxbrew/bin/g++-5 can compile ObjC++ | |
| running: /bio/linuxbrew/bin/g++-5 -c conftest.mm -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Os -w -pipe -march=core2 -D__ACCELERATE__ | |
| configure:8517: result: yes | |
| configure:8621: result: /bio/linuxbrew/bin/g++-5 | |
| configure:8690: checking for a sed that does not truncate output | |
| configure:8754: result: /bio/linuxbrew/bin/sed | |
| configure:8772: checking for fgrep | |
| configure:8834: result: /usr/bin/grep -F | |
| configure:8862: checking for ld used by /bio/linuxbrew/bin/gcc-5 | |
| configure:8929: result: /bio/linuxbrew/bin/ld | |
| configure:8936: checking if the linker (/bio/linuxbrew/bin/ld) is GNU ld | |
| configure:8951: result: yes | |
| configure:8963: checking for BSD- or MS-compatible name lister (nm) | |
| configure:9012: result: /bio/linuxbrew/bin/nm -B | |
| configure:9130: checking the name lister (/bio/linuxbrew/bin/nm -B) interface | |
| configure:9137: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:9140: /bio/linuxbrew/bin/nm -B "conftest.o" | |
| configure:9143: output | |
| 0000000000000000 B some_variable | |
| configure:9150: result: BSD nm | |
| configure:9154: checking the maximum length of command line arguments | |
| configure:9274: result: 1572864 | |
| configure:9291: checking whether the shell understands some XSI constructs | |
| configure:9301: result: yes | |
| configure:9305: checking whether the shell understands "+=" | |
| configure:9311: result: yes | |
| configure:9346: checking for /bio/linuxbrew/bin/ld option to reload object files | |
| configure:9353: result: -r | |
| configure:9422: checking for objdump | |
| configure:9438: found /bio/linuxbrew/bin/objdump | |
| configure:9449: result: objdump | |
| configure:9481: checking how to recognize dependent libraries | |
| configure:9677: result: pass_all | |
| configure:9842: checking for strip | |
| configure:9858: found /bio/linuxbrew/bin/strip | |
| configure:9869: result: strip | |
| configure:9941: checking for ranlib | |
| configure:9957: found /bio/linuxbrew/bin/ranlib | |
| configure:9968: result: ranlib | |
| configure:10058: checking command to parse /bio/linuxbrew/bin/nm -B output from /bio/linuxbrew/bin/gcc-5 object | |
| configure:10176: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:10179: $? = 0 | |
| configure:10183: /bio/linuxbrew/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm | |
| configure:10186: $? = 0 | |
| configure:10240: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c conftstm.o >&5 | |
| configure:10243: $? = 0 | |
| configure:10281: result: ok | |
| configure:10893: checking for dlfcn.h | |
| configure:10893: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:10893: $? = 0 | |
| configure:10893: result: yes | |
| configure:11018: checking for C++ compiler version | |
| configure:11027: /bio/linuxbrew/bin/g++-5 --version >&5 | |
| g++-5 (Homebrew gcc 5.3.0) 5.3.0 | |
| Copyright (C) 2015 Free Software Foundation, Inc. | |
| This is free software; see the source for copying conditions. There is NO | |
| warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. | |
| configure:11038: $? = 0 | |
| configure:11027: /bio/linuxbrew/bin/g++-5 -v >&5 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| COLLECT_GCC=/bio/linuxbrew/bin/g++-5 | |
| COLLECT_LTO_WRAPPER=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper | |
| Target: x86_64-unknown-linux-gnu | |
| Configured with: ../configure --prefix=/bio/linuxbrew/Cellar/gcc/5.3.0 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/bio/linuxbrew/opt/gmp --with-mpfr=/bio/linuxbrew/opt/mpfr --with-mpc=/bio/linuxbrew/opt/libmpc --with-isl=/bio/linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| configure:11038: $? = 0 | |
| configure:11027: /bio/linuxbrew/bin/g++-5 -V >&5 | |
| g++-5: error: unrecognized command line option '-V' | |
| g++-5: fatal error: no input files | |
| compilation terminated. | |
| configure:11038: $? = 1 | |
| configure:11027: /bio/linuxbrew/bin/g++-5 -qversion >&5 | |
| g++-5: error: unrecognized command line option '-qversion' | |
| g++-5: fatal error: no input files | |
| compilation terminated. | |
| configure:11038: $? = 1 | |
| configure:11042: checking whether we are using the GNU C++ compiler | |
| configure:11070: result: yes | |
| configure:11079: checking whether /bio/linuxbrew/bin/g++-5 accepts -g | |
| configure:11140: result: yes | |
| configure:11171: checking how to run the C++ preprocessor | |
| configure:11237: result: /bio/linuxbrew/bin/g++-5 -E | |
| configure:11257: /bio/linuxbrew/bin/g++-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.cpp | |
| configure:11257: $? = 0 | |
| configure:11271: /bio/linuxbrew/bin/g++-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.cpp | |
| conftest.cpp:34:28: fatal error: ac_nonexistent.h: No such file or directory | |
| compilation terminated. | |
| configure:11271: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <ac_nonexistent.h> | |
| configure:11412: checking for Fortran 77 compiler version | |
| configure:11421: /bio/linuxbrew/bin/gfortran --version >&5 | |
| GNU Fortran (Homebrew gcc 5.3.0) 5.3.0 | |
| Copyright (C) 2015 Free Software Foundation, Inc. | |
| GNU Fortran comes with NO WARRANTY, to the extent permitted by law. | |
| You may redistribute copies of GNU Fortran | |
| under the terms of the GNU General Public License. | |
| For more information about these matters, see the file named COPYING | |
| configure:11432: $? = 0 | |
| configure:11421: /bio/linuxbrew/bin/gfortran -v >&5 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| COLLECT_GCC=/bio/linuxbrew/bin/gfortran | |
| COLLECT_LTO_WRAPPER=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper | |
| Target: x86_64-unknown-linux-gnu | |
| Configured with: ../configure --prefix=/bio/linuxbrew/Cellar/gcc/5.3.0 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/bio/linuxbrew/opt/gmp --with-mpfr=/bio/linuxbrew/opt/mpfr --with-mpc=/bio/linuxbrew/opt/libmpc --with-isl=/bio/linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| configure:11432: $? = 0 | |
| configure:11421: /bio/linuxbrew/bin/gfortran -V >&5 | |
| gfortran: error: unrecognized command line option '-V' | |
| gfortran: fatal error: no input files | |
| compilation terminated. | |
| configure:11432: $? = 1 | |
| configure:11421: /bio/linuxbrew/bin/gfortran -qversion >&5 | |
| gfortran: error: unrecognized command line option '-qversion' | |
| gfortran: fatal error: no input files | |
| compilation terminated. | |
| configure:11432: $? = 1 | |
| configure:11441: checking whether we are using the GNU Fortran 77 compiler | |
| configure:11463: result: yes | |
| configure:11469: checking whether /bio/linuxbrew/bin/gfortran accepts -g | |
| configure:11488: result: yes | |
| configure:11666: checking for objdir | |
| configure:11681: result: .libs | |
| configure:11977: checking if /bio/linuxbrew/bin/gcc-5 supports -fno-rtti -fno-exceptions | |
| configure:11995: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -fno-rtti -fno-exceptions conftest.c >&5 | |
| configure:11999: $? = 0 | |
| configure:12012: result: yes | |
| configure:12032: checking for /bio/linuxbrew/bin/gcc-5 option to produce PIC | |
| configure:12304: result: -fPIC -DPIC | |
| configure:12316: checking if /bio/linuxbrew/bin/gcc-5 PIC flag -fPIC -DPIC works | |
| configure:12334: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -fPIC -DPIC -DPIC conftest.c >&5 | |
| configure:12338: $? = 0 | |
| configure:12351: result: yes | |
| configure:12375: checking if /bio/linuxbrew/bin/gcc-5 static flag -static works | |
| configure:12403: result: no | |
| configure:12418: checking if /bio/linuxbrew/bin/gcc-5 supports -c -o file.o | |
| configure:12439: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -o out/conftest2.o conftest.c >&5 | |
| configure:12443: $? = 0 | |
| configure:12465: result: yes | |
| configure:12473: checking if /bio/linuxbrew/bin/gcc-5 supports -c -o file.o | |
| configure:12520: result: yes | |
| configure:12553: checking whether the /bio/linuxbrew/bin/gcc-5 linker (/bio/linuxbrew/bin/ld) supports shared libraries | |
| configure:13535: result: yes | |
| configure:13572: checking whether -lc should be explicitly linked in | |
| configure:13577: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:13580: $? = 0 | |
| configure:13595: /bio/linuxbrew/bin/gcc-5 -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1 | |
| configure:13598: $? = 0 | |
| configure:13610: result: no | |
| configure:13774: checking dynamic linker characteristics | |
| configure:14203: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -Wl,-rpath -Wl,/foo conftest.c >&5 | |
| configure:14203: $? = 0 | |
| configure:14421: result: GNU/Linux ld.so | |
| configure:14523: checking how to hardcode library paths into programs | |
| configure:14548: result: immediate | |
| configure:15068: checking whether stripping libraries is possible | |
| configure:15073: result: yes | |
| configure:15108: checking if libtool supports shared libraries | |
| configure:15110: result: yes | |
| configure:15113: checking whether to build shared libraries | |
| configure:15134: result: yes | |
| configure:15137: checking whether to build static libraries | |
| configure:15141: result: no | |
| configure:15284: checking for ld used by /bio/linuxbrew/bin/g++-5 | |
| configure:15351: result: /bio/linuxbrew/bin/ld | |
| configure:15358: checking if the linker (/bio/linuxbrew/bin/ld) is GNU ld | |
| configure:15373: result: yes | |
| configure:15428: checking whether the /bio/linuxbrew/bin/g++-5 linker (/bio/linuxbrew/bin/ld) supports shared libraries | |
| configure:16341: result: yes | |
| configure:16369: /bio/linuxbrew/bin/g++-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.cpp >&5 | |
| configure:16372: $? = 0 | |
| configure:16554: checking for /bio/linuxbrew/bin/g++-5 option to produce PIC | |
| configure:16871: result: -fPIC -DPIC | |
| configure:16880: checking if /bio/linuxbrew/bin/g++-5 PIC flag -fPIC -DPIC works | |
| configure:16898: /bio/linuxbrew/bin/g++-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -fPIC -DPIC -DPIC conftest.cpp >&5 | |
| configure:16902: $? = 0 | |
| configure:16915: result: yes | |
| configure:16936: checking if /bio/linuxbrew/bin/g++-5 static flag -static works | |
| configure:16964: result: no | |
| configure:16976: checking if /bio/linuxbrew/bin/g++-5 supports -c -o file.o | |
| configure:16997: /bio/linuxbrew/bin/g++-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -o out/conftest2.o conftest.cpp >&5 | |
| configure:17001: $? = 0 | |
| configure:17023: result: yes | |
| configure:17028: checking if /bio/linuxbrew/bin/g++-5 supports -c -o file.o | |
| configure:17075: result: yes | |
| configure:17105: checking whether the /bio/linuxbrew/bin/g++-5 linker (/bio/linuxbrew/bin/ld) supports shared libraries | |
| configure:17131: result: yes | |
| configure:17268: checking dynamic linker characteristics | |
| configure:17645: /bio/linuxbrew/bin/g++-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -Wl,-rpath -Wl,/foo conftest.cpp >&5 | |
| configure:17645: $? = 0 | |
| configure:17863: result: GNU/Linux ld.so | |
| configure:17914: checking how to hardcode library paths into programs | |
| configure:17939: result: immediate | |
| configure:18080: checking if libtool supports shared libraries | |
| configure:18082: result: yes | |
| configure:18085: checking whether to build shared libraries | |
| configure:18105: result: yes | |
| configure:18108: checking whether to build static libraries | |
| configure:18112: result: no | |
| configure:18126: checking for /bio/linuxbrew/bin/gfortran option to produce PIC | |
| configure:18398: result: -fPIC | |
| configure:18407: checking if /bio/linuxbrew/bin/gfortran PIC flag -fPIC works | |
| configure:18425: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 -fPIC conftest.f >&5 | |
| configure:18429: $? = 0 | |
| configure:18442: result: yes | |
| configure:18463: checking if /bio/linuxbrew/bin/gfortran static flag -static works | |
| configure:18491: result: no | |
| configure:18503: checking if /bio/linuxbrew/bin/gfortran supports -c -o file.o | |
| configure:18524: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 -o out/conftest2.o conftest.f >&5 | |
| configure:18528: $? = 0 | |
| configure:18550: result: yes | |
| configure:18555: checking if /bio/linuxbrew/bin/gfortran supports -c -o file.o | |
| configure:18602: result: yes | |
| configure:18632: checking whether the /bio/linuxbrew/bin/gfortran linker (/bio/linuxbrew/bin/ld) supports shared libraries | |
| configure:19601: result: yes | |
| configure:19738: checking dynamic linker characteristics | |
| configure:20109: /bio/linuxbrew/bin/gfortran -o conftest -Os -w -pipe -march=core2 -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -Wl,-rpath -Wl,/foo conftest.f >&5 | |
| configure:20109: $? = 0 | |
| configure:20327: result: GNU/Linux ld.so | |
| configure:20378: checking how to hardcode library paths into programs | |
| configure:20403: result: immediate | |
| configure:20659: checking for cos in -lm | |
| configure:20684: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lm >&5 | |
| configure:20684: $? = 0 | |
| configure:20693: result: yes | |
| configure:20707: checking for sin in -lm | |
| configure:20732: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lm >&5 | |
| configure:20732: $? = 0 | |
| configure:20741: result: yes | |
| configure:20863: checking for dlopen in -ldl | |
| configure:20888: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:20888: $? = 0 | |
| configure:20897: result: yes | |
| configure:20916: checking readline/history.h usability | |
| configure:20916: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:20916: $? = 0 | |
| configure:20916: result: yes | |
| configure:20916: checking readline/history.h presence | |
| configure:20916: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:20916: $? = 0 | |
| configure:20916: result: yes | |
| configure:20916: checking for readline/history.h | |
| configure:20916: result: yes | |
| configure:20916: checking readline/readline.h usability | |
| configure:20916: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:20916: $? = 0 | |
| configure:20916: result: yes | |
| configure:20916: checking readline/readline.h presence | |
| configure:20916: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:20916: $? = 0 | |
| configure:20916: result: yes | |
| configure:20916: checking for readline/readline.h | |
| configure:20916: result: yes | |
| configure:20930: checking for rl_callback_read_char in -lreadline | |
| configure:20955: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lreadline >&5 | |
| /bio/linuxbrew/opt/readline/lib/libreadline.so: undefined reference to `tputs' | |
| /bio/linuxbrew/opt/readline/lib/libreadline.so: undefined reference to `tgoto' | |
| /bio/linuxbrew/opt/readline/lib/libreadline.so: undefined reference to `tgetflag' | |
| /bio/linuxbrew/opt/readline/lib/libreadline.so: undefined reference to `UP' | |
| /bio/linuxbrew/opt/readline/lib/libreadline.so: undefined reference to `tgetent' | |
| /bio/linuxbrew/opt/readline/lib/libreadline.so: undefined reference to `tgetnum' | |
| /bio/linuxbrew/opt/readline/lib/libreadline.so: undefined reference to `PC' | |
| /bio/linuxbrew/opt/readline/lib/libreadline.so: undefined reference to `tgetstr' | |
| /bio/linuxbrew/opt/readline/lib/libreadline.so: undefined reference to `BC' | |
| collect2: error: ld returned 1 exit status | |
| configure:20955: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | /* end confdefs.h. */ | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char rl_callback_read_char (); | |
| | int | |
| | main () | |
| | { | |
| | return rl_callback_read_char (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:20964: result: no | |
| configure:20979: checking for main in -lncurses | |
| configure:20998: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lncurses >&5 | |
| configure:20998: $? = 0 | |
| configure:21007: result: yes | |
| configure:21098: checking for rl_callback_read_char in -lreadline | |
| configure:21123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lreadline -lncurses >&5 | |
| configure:21123: $? = 0 | |
| configure:21132: result: yes | |
| configure:21148: checking for history_truncate_file | |
| configure:21148: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lreadline -lncurses >&5 | |
| configure:21148: $? = 0 | |
| configure:21148: result: yes | |
| configure:21163: checking whether rl_completion_matches exists and is declared | |
| configure:21185: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lreadline -lncurses >&5 | |
| configure:21185: $? = 0 | |
| configure:21194: result: yes | |
| configure:21212: checking for ANSI C header files | |
| configure:21316: result: yes | |
| configure:21327: checking for dirent.h that defines DIR | |
| configure:21346: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21346: $? = 0 | |
| configure:21354: result: yes | |
| configure:21367: checking for library containing opendir | |
| configure:21398: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:21398: $? = 0 | |
| configure:21415: result: none required | |
| configure:21486: checking for sys/wait.h that is POSIX.1 compatible | |
| configure:21512: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21512: $? = 0 | |
| configure:21519: result: yes | |
| configure:21548: checking arpa/inet.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking arpa/inet.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for arpa/inet.h | |
| configure:21548: result: yes | |
| configure:21548: checking dl.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c:80:16: fatal error: dl.h: No such file or directory | |
| compilation terminated. | |
| configure:21548: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | #include <dl.h> | |
| configure:21548: result: no | |
| configure:21548: checking dl.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| conftest.c:47:16: fatal error: dl.h: No such file or directory | |
| compilation terminated. | |
| configure:21548: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <dl.h> | |
| configure:21548: result: no | |
| configure:21548: checking for dl.h | |
| configure:21548: result: no | |
| configure:21548: checking for dlfcn.h | |
| configure:21548: result: yes | |
| configure:21548: checking elf.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking elf.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for elf.h | |
| configure:21548: result: yes | |
| configure:21548: checking features.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking features.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for features.h | |
| configure:21548: result: yes | |
| configure:21548: checking fcntl.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking fcntl.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for fcntl.h | |
| configure:21548: result: yes | |
| configure:21548: checking floatingpoint.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c:84:27: fatal error: floatingpoint.h: No such file or directory | |
| compilation terminated. | |
| configure:21548: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | #include <floatingpoint.h> | |
| configure:21548: result: no | |
| configure:21548: checking floatingpoint.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| conftest.c:51:27: fatal error: floatingpoint.h: No such file or directory | |
| compilation terminated. | |
| configure:21548: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <floatingpoint.h> | |
| configure:21548: result: no | |
| configure:21548: checking for floatingpoint.h | |
| configure:21548: result: no | |
| configure:21548: checking fpu_control.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking fpu_control.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for fpu_control.h | |
| configure:21548: result: yes | |
| configure:21548: checking glob.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking glob.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for glob.h | |
| configure:21548: result: yes | |
| configure:21548: checking grp.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking grp.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for grp.h | |
| configure:21548: result: yes | |
| configure:21548: checking langinfo.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking langinfo.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for langinfo.h | |
| configure:21548: result: yes | |
| configure:21548: checking netdb.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking netdb.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for netdb.h | |
| configure:21548: result: yes | |
| configure:21548: checking netinet/in.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking netinet/in.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for netinet/in.h | |
| configure:21548: result: yes | |
| configure:21548: checking pwd.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking pwd.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for pwd.h | |
| configure:21548: result: yes | |
| configure:21548: checking sched.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking sched.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for sched.h | |
| configure:21548: result: yes | |
| configure:21548: checking for strings.h | |
| configure:21548: result: yes | |
| configure:21548: checking sys/param.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking sys/param.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for sys/param.h | |
| configure:21548: result: yes | |
| configure:21548: checking sys/resource.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking sys/resource.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for sys/resource.h | |
| configure:21548: result: yes | |
| configure:21548: checking sys/select.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking sys/select.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for sys/select.h | |
| configure:21548: result: yes | |
| configure:21548: checking sys/socket.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking sys/socket.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for sys/socket.h | |
| configure:21548: result: yes | |
| configure:21548: checking for sys/stat.h | |
| configure:21548: result: yes | |
| configure:21548: checking sys/time.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking sys/time.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for sys/time.h | |
| configure:21548: result: yes | |
| configure:21548: checking sys/times.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking sys/times.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for sys/times.h | |
| configure:21548: result: yes | |
| configure:21548: checking sys/utsname.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking sys/utsname.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for sys/utsname.h | |
| configure:21548: result: yes | |
| configure:21548: checking for unistd.h | |
| configure:21548: result: yes | |
| configure:21548: checking utime.h usability | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking utime.h presence | |
| configure:21548: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21548: $? = 0 | |
| configure:21548: result: yes | |
| configure:21548: checking for utime.h | |
| configure:21548: result: yes | |
| configure:21562: checking stdalign.h usability | |
| configure:21562: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21562: $? = 0 | |
| configure:21562: result: yes | |
| configure:21562: checking stdalign.h presence | |
| configure:21562: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21562: $? = 0 | |
| configure:21562: result: yes | |
| configure:21562: checking for stdalign.h | |
| configure:21562: result: yes | |
| configure:21579: checking errno.h usability | |
| configure:21579: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21579: $? = 0 | |
| configure:21579: result: yes | |
| configure:21579: checking errno.h presence | |
| configure:21579: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21579: $? = 0 | |
| configure:21579: result: yes | |
| configure:21579: checking for errno.h | |
| configure:21579: result: yes | |
| configure:21579: checking for inttypes.h | |
| configure:21579: result: yes | |
| configure:21579: checking limits.h usability | |
| configure:21579: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21579: $? = 0 | |
| configure:21579: result: yes | |
| configure:21579: checking limits.h presence | |
| configure:21579: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21579: $? = 0 | |
| configure:21579: result: yes | |
| configure:21579: checking for limits.h | |
| configure:21579: result: yes | |
| configure:21579: checking locale.h usability | |
| configure:21579: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21579: $? = 0 | |
| configure:21579: result: yes | |
| configure:21579: checking locale.h presence | |
| configure:21579: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21579: $? = 0 | |
| configure:21579: result: yes | |
| configure:21579: checking for locale.h | |
| configure:21579: result: yes | |
| configure:21579: checking stdarg.h usability | |
| configure:21579: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21579: $? = 0 | |
| configure:21579: result: yes | |
| configure:21579: checking stdarg.h presence | |
| configure:21579: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21579: $? = 0 | |
| configure:21579: result: yes | |
| configure:21579: checking for stdarg.h | |
| configure:21579: result: yes | |
| configure:21579: checking stdbool.h usability | |
| configure:21579: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21579: $? = 0 | |
| configure:21579: result: yes | |
| configure:21579: checking stdbool.h presence | |
| configure:21579: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:21579: $? = 0 | |
| configure:21579: result: yes | |
| configure:21579: checking for stdbool.h | |
| configure:21579: result: yes | |
| configure:21579: checking for stdint.h | |
| configure:21579: result: yes | |
| configure:21579: checking for string.h | |
| configure:21579: result: yes | |
| configure:21592: checking whether setjmp.h is POSIX.1 compatible | |
| configure:21610: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21610: $? = 0 | |
| configure:21617: result: yes | |
| configure:21619: checking whether sigsetjmp is declared | |
| configure:21619: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21619: $? = 0 | |
| configure:21619: result: yes | |
| configure:21630: checking whether siglongjmp is declared | |
| configure:21630: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21630: $? = 0 | |
| configure:21630: result: yes | |
| configure:21654: checking for GNU C library with version >= 2 | |
| configure:21677: result: yes | |
| configure:21688: checking return type of signal handlers | |
| configure:21706: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:89:9: error: void value not ignored as it ought to be | |
| return *(signal (0, 0)) (0) == 1; | |
| ^ | |
| configure:21706: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | /* end confdefs.h. */ | |
| | #include <sys/types.h> | |
| | #include <signal.h> | |
| | | |
| | int | |
| | main () | |
| | { | |
| | return *(signal (0, 0)) (0) == 1; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:21713: result: void | |
| configure:21722: checking for uint64_t | |
| configure:21722: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21722: $? = 0 | |
| configure:21722: result: yes | |
| configure:21736: checking for int64_t | |
| configure:21736: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21736: $? = 0 | |
| configure:21736: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:120:22: error: expected expression before ')' token | |
| if (sizeof ((int64_t))) | |
| ^ | |
| configure:21736: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((int64_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:21736: result: yes | |
| configure:21745: checking for int_fast64_t | |
| configure:21745: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21745: $? = 0 | |
| configure:21745: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:121:27: error: expected expression before ')' token | |
| if (sizeof ((int_fast64_t))) | |
| ^ | |
| configure:21745: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((int_fast64_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:21745: result: yes | |
| configure:21755: checking for pid_t | |
| configure:21755: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21755: $? = 0 | |
| configure:21755: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:122:20: error: expected expression before ')' token | |
| if (sizeof ((pid_t))) | |
| ^ | |
| configure:21755: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((pid_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:21755: result: yes | |
| configure:21766: checking for size_t | |
| configure:21766: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21766: $? = 0 | |
| configure:21766: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:122:21: error: expected expression before ')' token | |
| if (sizeof ((size_t))) | |
| ^ | |
| configure:21766: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((size_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:21766: result: yes | |
| configure:21777: checking whether SIZE_MAX is declared | |
| configure:21810: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:21810: $? = 0 | |
| configure:21810: ./conftest | |
| configure:21810: $? = 0 | |
| configure:21820: result: yes | |
| configure:21828: checking for blkcnt_t | |
| configure:21828: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21828: $? = 0 | |
| configure:21828: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:123:23: error: expected expression before ')' token | |
| if (sizeof ((blkcnt_t))) | |
| ^ | |
| configure:21828: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((blkcnt_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:21828: result: yes | |
| configure:21840: checking for type of socket length | |
| configure:21866: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21866: $? = 0 | |
| configure:21886: result: socklen_t * | |
| configure:21895: checking for stack_t | |
| configure:21895: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21895: $? = 0 | |
| configure:21895: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:93:22: error: expected expression before ')' token | |
| if (sizeof ((stack_t))) | |
| ^ | |
| configure:21895: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | /* end confdefs.h. */ | |
| | #include <signal.h> | |
| | | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((stack_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:21895: result: yes | |
| configure:21911: checking for intptr_t | |
| configure:21911: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21911: $? = 0 | |
| configure:21911: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:99:23: error: expected expression before ')' token | |
| if (sizeof ((intptr_t))) | |
| ^ | |
| configure:21911: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | /* end confdefs.h. */ | |
| | #ifdef HAVE_INTTYPES_H | |
| | #include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | #include <stdint.h> | |
| | #endif | |
| | | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((intptr_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:21911: result: yes | |
| configure:21926: checking for uintptr_t | |
| configure:21926: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21926: $? = 0 | |
| configure:21926: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:100:24: error: expected expression before ')' token | |
| if (sizeof ((uintptr_t))) | |
| ^ | |
| configure:21926: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | /* end confdefs.h. */ | |
| | #ifdef HAVE_INTTYPES_H | |
| | #include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | #include <stdint.h> | |
| | #endif | |
| | | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((uintptr_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:21926: result: yes | |
| configure:21949: checking whether byte ordering is bigendian | |
| configure:21972: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:21972: $? = 0 | |
| configure:21990: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:98:2: error: unknown type name 'not' | |
| not big endian | |
| ^ | |
| conftest.c:98:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian' | |
| not big endian | |
| ^ | |
| configure:21990: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | /* end confdefs.h. */ | |
| | #include <sys/types.h> | |
| | #include <sys/param.h> | |
| | | |
| | int | |
| | main () | |
| | { | |
| | #if BYTE_ORDER != BIG_ENDIAN | |
| | not big endian | |
| | #endif | |
| | | |
| | ; | |
| | return 0; | |
| | } | |
| configure:22064: result: no | |
| configure:22078: checking for an ANSI C-conforming const | |
| configure:22144: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:22144: $? = 0 | |
| configure:22151: result: yes | |
| configure:22163: checking for /bio/linuxbrew/bin/gcc-5 option to accept ISO C99 | |
| configure:22312: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:22312: $? = 0 | |
| configure:22325: result: none needed | |
| configure:22433: checking for /bio/linuxbrew/bin/gcc-5 option to accept ISO Standard C | |
| configure:22444: result: none needed | |
| configure:22451: checking for inline | |
| configure:22466: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:22466: $? = 0 | |
| configure:22473: result: inline | |
| configure:22489: checking size of int | |
| configure:22494: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:22494: $? = 0 | |
| configure:22494: ./conftest | |
| configure:22494: $? = 0 | |
| configure:22508: result: 4 | |
| configure:22530: checking size of long | |
| configure:22535: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:22535: $? = 0 | |
| configure:22535: ./conftest | |
| configure:22535: $? = 0 | |
| configure:22549: result: 8 | |
| configure:22563: checking size of long long | |
| configure:22568: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:22568: $? = 0 | |
| configure:22568: ./conftest | |
| configure:22568: $? = 0 | |
| configure:22582: result: 8 | |
| configure:22596: checking size of double | |
| configure:22601: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:22601: $? = 0 | |
| configure:22601: ./conftest | |
| configure:22601: $? = 0 | |
| configure:22615: result: 8 | |
| configure:22629: checking size of size_t | |
| configure:22634: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:22634: $? = 0 | |
| configure:22634: ./conftest | |
| configure:22634: $? = 0 | |
| configure:22648: result: 8 | |
| configure:22678: checking size of long double | |
| configure:22683: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:22683: $? = 0 | |
| configure:22683: ./conftest | |
| configure:22683: $? = 0 | |
| configure:22697: result: 16 | |
| configure:22713: checking whether we can compute C Make dependencies | |
| configure:22751: result: yes, using $(CC) -MM | |
| configure:22775: checking whether /bio/linuxbrew/bin/gcc-5 supports -c -o FILE.lo | |
| configure:22785: /bio/linuxbrew/bin/gcc-5 -Os -w -pipe -march=core2 -D__ACCELERATE__ -c conftest.c -o TMP/conftest.lo 1>&5 | |
| configure:22788: $? = 0 | |
| configure:22791: /bio/linuxbrew/bin/gcc-5 -Os -w -pipe -march=core2 -D__ACCELERATE__ -c conftest.c -o TMP/conftest.lo 1>&5 | |
| configure:22794: $? = 0 | |
| configure:22802: result: yes | |
| configure:22831: checking for /bio/linuxbrew/bin/gcc-5 option to support OpenMP | |
| configure:22846: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| conftest.c:102:2: error: unknown type name 'choke' | |
| choke me | |
| ^ | |
| In file included from conftest.c:104:0: | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:35:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef' | |
| typedef struct | |
| ^ | |
| configure:22846: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | /* end confdefs.h. */ | |
| | | |
| | #ifndef _OPENMP | |
| | choke me | |
| | #endif | |
| | #include <omp.h> | |
| | int main () { return omp_get_num_threads (); } | |
| | | |
| configure:22866: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fopenmp -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:22866: $? = 0 | |
| configure:22880: result: -fopenmp | |
| configure:22911: checking how to get verbose linking output from /bio/linuxbrew/bin/gfortran | |
| configure:22921: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 conftest.f >&5 | |
| configure:22921: $? = 0 | |
| configure:22939: /bio/linuxbrew/bin/gfortran -o conftest -Os -w -pipe -march=core2 -v -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.f | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| Target: x86_64-unknown-linux-gnu | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -march=core2 -auxbase conftest -Os -w -version -fintrinsic-modules-path /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/finclude -o - | | |
| as -v -W --64 -o /tmp/cc5cx2q6.o | |
| GNU assembler version 2.25.1 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.1 | |
| GNU Fortran (Homebrew gcc 5.3.0) version 5.3.0 (x86_64-unknown-linux-gnu) | |
| compiled by GNU C version 5.3.0, GMP version 6.1.0, MPFR version 3.1.3-p2, MPC version 1.0.3 | |
| GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 | |
| GNU Fortran2008 (Homebrew gcc 5.3.0) version 5.3.0 (x86_64-unknown-linux-gnu) | |
| compiled by GNU C version 5.3.0, GMP version 6.1.0, MPFR version 3.1.3-p2, MPC version 1.0.3 | |
| GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64/libgfortran.spec | |
| rename spec lib to liborig | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/collect2 -plugin /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/liblto_plugin.so -plugin-opt=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccbIReIy.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -rpath /bio/linuxbrew/lib -o conftest /lib/../lib64/crt1.o /lib/../lib64/crti.o /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/crtbegin.o -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../.. -L/bio/linuxbrew/lib --dynamic-linker=/bio/linuxbrew/lib/ld.so -rpath /bio/linuxbrew/lib /tmp/cc5cx2q6.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/crtend.o /lib/../lib64/crtn.o | |
| configure:23022: result: -v | |
| configure:23024: checking for Fortran 77 libraries of /bio/linuxbrew/bin/gfortran | |
| configure:23047: /bio/linuxbrew/bin/gfortran -o conftest -Os -w -pipe -march=core2 -v -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.f | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| Target: x86_64-unknown-linux-gnu | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -march=core2 -auxbase conftest -Os -w -version -fintrinsic-modules-path /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/finclude -o - | | |
| as -v -W --64 -o /tmp/ccBSDBC7.o | |
| GNU assembler version 2.25.1 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.1 | |
| GNU Fortran (Homebrew gcc 5.3.0) version 5.3.0 (x86_64-unknown-linux-gnu) | |
| compiled by GNU C version 5.3.0, GMP version 6.1.0, MPFR version 3.1.3-p2, MPC version 1.0.3 | |
| GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 | |
| GNU Fortran2008 (Homebrew gcc 5.3.0) version 5.3.0 (x86_64-unknown-linux-gnu) | |
| compiled by GNU C version 5.3.0, GMP version 6.1.0, MPFR version 3.1.3-p2, MPC version 1.0.3 | |
| GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64/libgfortran.spec | |
| rename spec lib to liborig | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/collect2 -plugin /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/liblto_plugin.so -plugin-opt=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper -plugin-opt=-fresolution=/tmp/cc03rF1z.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -rpath /bio/linuxbrew/lib -o conftest /lib/../lib64/crt1.o /lib/../lib64/crti.o /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/crtbegin.o -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../.. -L/bio/linuxbrew/lib --dynamic-linker=/bio/linuxbrew/lib/ld.so -rpath /bio/linuxbrew/lib /tmp/ccBSDBC7.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/crtend.o /lib/../lib64/crtn.o | |
| configure:23243: result: -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../.. -L/bio/linuxbrew/lib -lgfortran -lm -lquadmath | |
| configure:23261: checking how to get verbose linking output from /bio/linuxbrew/bin/gcc-5 | |
| configure:23277: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:23277: $? = 0 | |
| configure:23299: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -v -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c >&5 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| COLLECT_GCC=/bio/linuxbrew/bin/gcc-5 | |
| COLLECT_LTO_WRAPPER=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper | |
| Target: x86_64-unknown-linux-gnu | |
| Configured with: ../configure --prefix=/bio/linuxbrew/Cellar/gcc/5.3.0 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/bio/linuxbrew/opt/gmp --with-mpfr=/bio/linuxbrew/opt/mpfr --with-mpc=/bio/linuxbrew/opt/libmpc --with-isl=/bio/linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| COLLECT_GCC_OPTIONS='-o' 'conftest' '-Os' '-w' '-pipe' '-march=core2' '-D' '__ACCELERATE__' '-v' '-isystem' '/bio/linuxbrew/include' '-I' '/bio/linuxbrew/opt/gettext/include' '-I' '/bio/linuxbrew/opt/readline/include' '-I' '/bio/linuxbrew/opt/openssl/include' '-L/bio/linuxbrew/opt/gettext/lib' '-L/bio/linuxbrew/opt/readline/lib' '-L/bio/linuxbrew/opt/openssl/lib' | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/cc1 -quiet -v -I /bio/linuxbrew/opt/gettext/include -I /bio/linuxbrew/opt/readline/include -I /bio/linuxbrew/opt/openssl/include -D __ACCELERATE__ -isystem /bio/linuxbrew/include conftest.c -quiet -dumpbase conftest.c -march=core2 -auxbase conftest -Os -w -version -o - | | |
| as -v -W -I /bio/linuxbrew/opt/gettext/include -I /bio/linuxbrew/opt/readline/include -I /bio/linuxbrew/opt/openssl/include --64 -o /tmp/cch4UjQf.o | |
| GNU assembler version 2.25.1 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.1 | |
| GNU C11 (Homebrew gcc 5.3.0) version 5.3.0 (x86_64-unknown-linux-gnu) | |
| compiled by GNU C version 5.3.0, GMP version 6.1.0, MPFR version 3.1.3-p2, MPC version 1.0.3 | |
| GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 | |
| ignoring nonexistent directory "/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../x86_64-unknown-linux-gnu/include" | |
| #include "..." search starts here: | |
| #include <...> search starts here: | |
| /bio/linuxbrew/opt/gettext/include | |
| /bio/linuxbrew/opt/readline/include | |
| /bio/linuxbrew/opt/openssl/include | |
| /bio/linuxbrew/include | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include | |
| /usr/local/include | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/include | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include-fixed | |
| /usr/include | |
| End of search list. | |
| GNU C11 (Homebrew gcc 5.3.0) version 5.3.0 (x86_64-unknown-linux-gnu) | |
| compiled by GNU C version 5.3.0, GMP version 6.1.0, MPFR version 3.1.3-p2, MPC version 1.0.3 | |
| GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 | |
| Compiler executable checksum: 73de229744771ae2e470a513e4df05ec | |
| COMPILER_PATH=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/:/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/:/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/:/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/:/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/ | |
| LIBRARY_PATH=/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/:/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../:/lib/:/usr/lib/ | |
| COLLECT_GCC_OPTIONS='-o' 'conftest' '-Os' '-w' '-pipe' '-march=core2' '-D' '__ACCELERATE__' '-v' '-isystem' '/bio/linuxbrew/include' '-I' '/bio/linuxbrew/opt/gettext/include' '-I' '/bio/linuxbrew/opt/readline/include' '-I' '/bio/linuxbrew/opt/openssl/include' '-L/bio/linuxbrew/opt/gettext/lib' '-L/bio/linuxbrew/opt/readline/lib' '-L/bio/linuxbrew/opt/openssl/lib' | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/collect2 -plugin /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/liblto_plugin.so -plugin-opt=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccwGkiqI.res -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -rpath /bio/linuxbrew/lib -o conftest /lib/../lib64/crt1.o /lib/../lib64/crti.o /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/crtbegin.o -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../.. -L/bio/linuxbrew/lib --dynamic-linker=/bio/linuxbrew/lib/ld.so -rpath /bio/linuxbrew/lib /tmp/cch4UjQf.o -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/crtend.o /lib/../lib64/crtn.o | |
| configure:23345: result: -v | |
| configure:23347: checking for C libraries of /bio/linuxbrew/bin/gcc-5 | |
| configure:23374: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -v -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c >&5 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| COLLECT_GCC=/bio/linuxbrew/bin/gcc-5 | |
| COLLECT_LTO_WRAPPER=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper | |
| Target: x86_64-unknown-linux-gnu | |
| Configured with: ../configure --prefix=/bio/linuxbrew/Cellar/gcc/5.3.0 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/bio/linuxbrew/opt/gmp --with-mpfr=/bio/linuxbrew/opt/mpfr --with-mpc=/bio/linuxbrew/opt/libmpc --with-isl=/bio/linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| COLLECT_GCC_OPTIONS='-o' 'conftest' '-Os' '-w' '-pipe' '-march=core2' '-D' '__ACCELERATE__' '-v' '-isystem' '/bio/linuxbrew/include' '-I' '/bio/linuxbrew/opt/gettext/include' '-I' '/bio/linuxbrew/opt/readline/include' '-I' '/bio/linuxbrew/opt/openssl/include' '-L/bio/linuxbrew/opt/gettext/lib' '-L/bio/linuxbrew/opt/readline/lib' '-L/bio/linuxbrew/opt/openssl/lib' | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/cc1 -quiet -v -I /bio/linuxbrew/opt/gettext/include -I /bio/linuxbrew/opt/readline/include -I /bio/linuxbrew/opt/openssl/include -D __ACCELERATE__ -isystem /bio/linuxbrew/include conftest.c -quiet -dumpbase conftest.c -march=core2 -auxbase conftest -Os -w -version -o - | | |
| as -v -W -I /bio/linuxbrew/opt/gettext/include -I /bio/linuxbrew/opt/readline/include -I /bio/linuxbrew/opt/openssl/include --64 -o /tmp/cccFdZUi.o | |
| GNU assembler version 2.25.1 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.1 | |
| GNU C11 (Homebrew gcc 5.3.0) version 5.3.0 (x86_64-unknown-linux-gnu) | |
| compiled by GNU C version 5.3.0, GMP version 6.1.0, MPFR version 3.1.3-p2, MPC version 1.0.3 | |
| GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 | |
| ignoring nonexistent directory "/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../x86_64-unknown-linux-gnu/include" | |
| #include "..." search starts here: | |
| #include <...> search starts here: | |
| /bio/linuxbrew/opt/gettext/include | |
| /bio/linuxbrew/opt/readline/include | |
| /bio/linuxbrew/opt/openssl/include | |
| /bio/linuxbrew/include | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include | |
| /usr/local/include | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/include | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include-fixed | |
| /usr/include | |
| End of search list. | |
| GNU C11 (Homebrew gcc 5.3.0) version 5.3.0 (x86_64-unknown-linux-gnu) | |
| compiled by GNU C version 5.3.0, GMP version 6.1.0, MPFR version 3.1.3-p2, MPC version 1.0.3 | |
| GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 | |
| Compiler executable checksum: 73de229744771ae2e470a513e4df05ec | |
| COMPILER_PATH=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/:/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/:/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/:/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/:/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/ | |
| LIBRARY_PATH=/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/:/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../:/lib/:/usr/lib/ | |
| COLLECT_GCC_OPTIONS='-o' 'conftest' '-Os' '-w' '-pipe' '-march=core2' '-D' '__ACCELERATE__' '-v' '-isystem' '/bio/linuxbrew/include' '-I' '/bio/linuxbrew/opt/gettext/include' '-I' '/bio/linuxbrew/opt/readline/include' '-I' '/bio/linuxbrew/opt/openssl/include' '-L/bio/linuxbrew/opt/gettext/lib' '-L/bio/linuxbrew/opt/readline/lib' '-L/bio/linuxbrew/opt/openssl/lib' | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/collect2 -plugin /bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/liblto_plugin.so -plugin-opt=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccf1VkBL.res -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -rpath /bio/linuxbrew/lib -o conftest /lib/../lib64/crt1.o /lib/../lib64/crti.o /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/crtbegin.o -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../.. -L/bio/linuxbrew/lib --dynamic-linker=/bio/linuxbrew/lib/ld.so -rpath /bio/linuxbrew/lib /tmp/cccFdZUi.o -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/crtend.o /lib/../lib64/crtn.o | |
| configure:23525: result: -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../.. -L/bio/linuxbrew/lib -lgcc_s | |
| configure:23660: checking for dummy main to link with Fortran 77 libraries | |
| configure:23694: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm -lgfortran -lm -lquadmath >&5 | |
| configure:23694: $? = 0 | |
| configure:23739: result: none | |
| configure:23772: checking for Fortran 77 name-mangling scheme | |
| configure:23785: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 conftest.f >&5 | |
| configure:23785: $? = 0 | |
| configure:23826: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c cfortran_test.o -ldl -lm -lgfortran -lm -lquadmath >&5 | |
| /tmp/ccRFgIqx.o: In function `main': | |
| conftest.c:(.text.startup+0x4): undefined reference to `foobar' | |
| collect2: error: ld returned 1 exit status | |
| configure:23826: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | /* end confdefs.h. */ | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char foobar (); | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | return foobar (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:23826: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c cfortran_test.o -ldl -lm -lgfortran -lm -lquadmath >&5 | |
| configure:23826: $? = 0 | |
| configure:23884: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c cfortran_test.o -ldl -lm -lgfortran -lm -lquadmath >&5 | |
| configure:23884: $? = 0 | |
| configure:23926: result: lower case, underscore, no extra underscore | |
| configure:24003: checking whether /bio/linuxbrew/bin/gfortran appends underscores to external names | |
| configure:24019: result: yes | |
| configure:24031: checking whether /bio/linuxbrew/bin/gfortran appends extra underscores to external names | |
| configure:24047: result: no | |
| configure:24061: checking whether mixed C/Fortran code can be run | |
| configure:24119: result: yes | |
| configure:24133: checking whether /bio/linuxbrew/bin/gfortran and /bio/linuxbrew/bin/gcc-5 agree on int and double | |
| configure:24211: result: yes | |
| configure:24225: checking whether /bio/linuxbrew/bin/gfortran and /bio/linuxbrew/bin/gcc-5 agree on double complex | |
| configure:24301: result: yes | |
| configure:24336: checking for /bio/linuxbrew/bin/gfortran option to support OpenMP | |
| configure:24351: /bio/linuxbrew/bin/gfortran -o conftest -Os -w -pipe -march=core2 -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.f -ldl -lm >&5 | |
| conftest.f:5:9: | |
| tid = 42 | |
| 1 | |
| Error: Symbol 'tid' at (1) has no IMPLICIT type | |
| configure:24351: $? = 1 | |
| configure: failed program was: | |
| | | |
| | program main | |
| | implicit none | |
| | !$ integer tid | |
| | tid = 42 | |
| | call omp_set_num_threads(2) | |
| | end | |
| | | |
| configure:24371: /bio/linuxbrew/bin/gfortran -o conftest -Os -w -pipe -march=core2 -fopenmp -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.f -ldl -lm >&5 | |
| configure:24371: $? = 0 | |
| configure:24385: result: -fopenmp | |
| configure:24407: checking whether /bio/linuxbrew/bin/g++-5 accepts -M for generating dependencies | |
| configure:24422: result: yes | |
| configure:24467: checking for /bio/linuxbrew/bin/g++-5 option to support OpenMP | |
| configure:24482: /bio/linuxbrew/bin/g++-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.cpp -ldl -lm >&5 | |
| conftest.cpp:106:2: error: 'choke' does not name a type | |
| choke me | |
| ^ | |
| In file included from conftest.cpp:108:0: | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:39:3: error: 'omp_lock_t' does not name a type | |
| } omp_lock_t; | |
| ^ | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:86:28: error: variable or field 'omp_init_lock' declared void | |
| extern void omp_init_lock (omp_lock_t *) __GOMP_NOTHROW; | |
| ^ | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:86:28: error: 'omp_lock_t' was not declared in this scope | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:86:40: error: expected primary-expression before ')' token | |
| extern void omp_init_lock (omp_lock_t *) __GOMP_NOTHROW; | |
| ^ | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:87:31: error: variable or field 'omp_destroy_lock' declared void | |
| extern void omp_destroy_lock (omp_lock_t *) __GOMP_NOTHROW; | |
| ^ | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:87:31: error: 'omp_lock_t' was not declared in this scope | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:87:43: error: expected primary-expression before ')' token | |
| extern void omp_destroy_lock (omp_lock_t *) __GOMP_NOTHROW; | |
| ^ | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:88:27: error: variable or field 'omp_set_lock' declared void | |
| extern void omp_set_lock (omp_lock_t *) __GOMP_NOTHROW; | |
| ^ | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:88:27: error: 'omp_lock_t' was not declared in this scope | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:88:39: error: expected primary-expression before ')' token | |
| extern void omp_set_lock (omp_lock_t *) __GOMP_NOTHROW; | |
| ^ | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:89:29: error: variable or field 'omp_unset_lock' declared void | |
| extern void omp_unset_lock (omp_lock_t *) __GOMP_NOTHROW; | |
| ^ | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:89:29: error: 'omp_lock_t' was not declared in this scope | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:89:41: error: expected primary-expression before ')' token | |
| extern void omp_unset_lock (omp_lock_t *) __GOMP_NOTHROW; | |
| ^ | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:90:27: error: 'omp_lock_t' was not declared in this scope | |
| extern int omp_test_lock (omp_lock_t *) __GOMP_NOTHROW; | |
| ^ | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:90:39: error: expected primary-expression before ')' token | |
| extern int omp_test_lock (omp_lock_t *) __GOMP_NOTHROW; | |
| ^ | |
| /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/include/omp.h:90:41: error: expected ',' or ';' before 'throw' | |
| extern int omp_test_lock (omp_lock_t *) __GOMP_NOTHROW; | |
| ^ | |
| configure:24482: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | /* end confdefs.h. */ | |
| | | |
| | #ifndef _OPENMP | |
| | choke me | |
| | #endif | |
| | #include <omp.h> | |
| | int main () { return omp_get_num_threads (); } | |
| | | |
| configure:24502: /bio/linuxbrew/bin/g++-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fopenmp -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.cpp -ldl -lm >&5 | |
| configure:24502: $? = 0 | |
| configure:24516: result: -fopenmp | |
| configure:24536: checking whether we can compute ObjC Make dependencies | |
| configure:24555: result: yes, using /bio/linuxbrew/bin/gcc-5 -MM | |
| configure:24600: checking for ObjC runtime library | |
| configure:24638: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.m -ldl -lm -lobjc >&5 | |
| configure:24638: $? = 0 | |
| configure:24651: result: -lobjc | |
| configure:24657: checking for ObjC runtime style | |
| configure:24696: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.m -lobjc -ldl -lm >&5 | |
| conftest.m:109:27: fatal error: objc/objc-api.h: No such file or directory | |
| compilation terminated. | |
| configure:24696: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | /* end confdefs.h. */ | |
| | | |
| | | |
| | /* see PR#15107 */ | |
| | #undef __OBJC2__ | |
| | #include <objc/objc.h> | |
| | #include <objc/objc-api.h> | |
| | | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | | |
| | id class = objc_lookup_class ("Object"); | |
| | | |
| | ; | |
| | return 0; | |
| | } | |
| | | |
| configure:24696: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.m -lobjc -ldl -lm >&5 | |
| conftest.m:109:27: fatal error: objc/objc-api.h: No such file or directory | |
| compilation terminated. | |
| configure:24696: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | /* end confdefs.h. */ | |
| | | |
| | | |
| | /* see PR#15107 */ | |
| | #undef __OBJC2__ | |
| | #include <objc/objc.h> | |
| | #include <objc/objc-api.h> | |
| | | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | | |
| | id class = objc_lookUpClass ("Object"); | |
| | | |
| | ; | |
| | return 0; | |
| | } | |
| | | |
| configure:24713: result: unknown | |
| configure:24744: checking whether /bio/linuxbrew/bin/gcc-5 accepts -fobjc-exceptions | |
| configure:24776: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fobjc-exceptions -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.m -ldl -lm >&5 | |
| configure:24776: $? = 0 | |
| configure:24794: result: yes | |
| configure:25136: checking whether C runtime needs -D__NO_MATH_INLINES | |
| configure:25163: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:25163: $? = 0 | |
| configure:25163: ./conftest | |
| configure:25163: $? = 0 | |
| configure:25173: result: no | |
| configure:26221: checking for xmkmf | |
| configure:26254: result: no | |
| configure:26890: checking whether /bio/linuxbrew/bin/g++-5 supports C++11 features by default | |
| configure:26916: /bio/linuxbrew/bin/g++-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.cpp >&5 | |
| conftest.cpp:109:21: error: expected identifier before 'sizeof' | |
| static_assert(sizeof(int) <= sizeof(T), "not big enough"); | |
| ^ | |
| conftest.cpp:109:21: error: expected ',' or '...' before 'sizeof' | |
| conftest.cpp:109:63: error: ISO C++ forbids declaration of 'static_assert' with no type [-fpermissive] | |
| static_assert(sizeof(int) <= sizeof(T), "not big enough"); | |
| ^ | |
| conftest.cpp:112:29: error: '>>' should be '> >' within a nested template argument list | |
| typedef check<check<bool>> right_angle_brackets; | |
| ^ | |
| conftest.cpp:115:13: error: expected constructor, destructor, or type conversion before '(' token | |
| decltype(a) b; | |
| ^ | |
| conftest.cpp:119:15: error: expected unqualified-id before '&&' token | |
| check_type&& cr = static_cast<check_type&&>(c); | |
| ^ | |
| conftest.cpp:121:10: error: 'd' does not name a type | |
| auto d = a; | |
| ^ | |
| configure:26916: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | /* end confdefs.h. */ | |
| | | |
| | template <typename T> | |
| | struct check | |
| | { | |
| | static_assert(sizeof(int) <= sizeof(T), "not big enough"); | |
| | }; | |
| | | |
| | typedef check<check<bool>> right_angle_brackets; | |
| | | |
| | int a; | |
| | decltype(a) b; | |
| | | |
| | typedef check<int> check_type; | |
| | check_type c; | |
| | check_type&& cr = static_cast<check_type&&>(c); | |
| | | |
| | auto d = a; | |
| | | |
| configure:26923: result: no | |
| configure:26934: checking whether /bio/linuxbrew/bin/g++-5 supports C++11 features with -std=c++11 | |
| configure:26962: /bio/linuxbrew/bin/g++-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -std=c++11 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.cpp >&5 | |
| configure:26962: $? = 0 | |
| configure:26971: result: yes | |
| configure:27152: checking for off_t | |
| configure:27152: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:27152: $? = 0 | |
| configure:27152: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:143:20: error: expected expression before ')' token | |
| if (sizeof ((off_t))) | |
| ^ | |
| configure:27152: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((off_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:27152: result: yes | |
| configure:27164: checking for working alloca.h | |
| configure:27189: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27189: $? = 0 | |
| configure:27197: result: yes | |
| configure:27205: checking for alloca | |
| configure:27250: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27250: $? = 0 | |
| configure:27258: result: yes | |
| configure:27364: checking whether alloca is declared | |
| configure:27364: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:27364: $? = 0 | |
| configure:27364: result: yes | |
| configure:27391: checking whether expm1 exists and is declared | |
| configure:27419: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27419: $? = 0 | |
| configure:27428: result: yes | |
| configure:27391: checking whether hypot exists and is declared | |
| configure:27419: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27419: $? = 0 | |
| configure:27428: result: yes | |
| configure:27391: checking whether log1p exists and is declared | |
| configure:27419: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27419: $? = 0 | |
| configure:27428: result: yes | |
| configure:27391: checking whether log1pl exists and is declared | |
| configure:27419: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27419: $? = 0 | |
| configure:27428: result: yes | |
| configure:27391: checking whether log2 exists and is declared | |
| configure:27419: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27419: $? = 0 | |
| configure:27428: result: yes | |
| configure:27391: checking whether log10 exists and is declared | |
| configure:27419: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27419: $? = 0 | |
| configure:27428: result: yes | |
| configure:27391: checking whether nearbyint exists and is declared | |
| configure:27419: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27419: $? = 0 | |
| configure:27428: result: yes | |
| configure:27391: checking whether nearbyintl exists and is declared | |
| configure:27419: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27419: $? = 0 | |
| configure:27428: result: yes | |
| configure:27391: checking whether powl exists and is declared | |
| configure:27419: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27419: $? = 0 | |
| configure:27428: result: yes | |
| configure:27391: checking whether rint exists and is declared | |
| configure:27419: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27419: $? = 0 | |
| configure:27428: result: yes | |
| configure:27391: checking whether rintl exists and is declared | |
| configure:27419: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27419: $? = 0 | |
| configure:27428: result: yes | |
| configure:27442: checking whether va_copy exists and is declared | |
| configure:27470: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27470: $? = 0 | |
| configure:27479: result: yes | |
| configure:27495: checking for isblank | |
| configure:27495: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27495: $? = 0 | |
| configure:27495: result: yes | |
| configure:27508: checking sunmath.h usability | |
| configure:27508: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c:157:21: fatal error: sunmath.h: No such file or directory | |
| compilation terminated. | |
| configure:27508: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | #include <sunmath.h> | |
| configure:27508: result: no | |
| configure:27508: checking sunmath.h presence | |
| configure:27508: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| conftest.c:124:21: fatal error: sunmath.h: No such file or directory | |
| compilation terminated. | |
| configure:27508: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | /* end confdefs.h. */ | |
| | #include <sunmath.h> | |
| configure:27508: result: no | |
| configure:27508: checking for sunmath.h | |
| configure:27508: result: no | |
| configure:27518: checking for cospi in -lsunmath | |
| configure:27551: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lsunmath -ldl -lm >&5 | |
| /bio/linuxbrew/bin/ld: cannot find -lsunmath | |
| collect2: error: ld returned 1 exit status | |
| configure:27551: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | /* end confdefs.h. */ | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char cospi (); | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | return cospi (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:27560: result: no | |
| configure:27578: checking for atanpi | |
| configure:27578: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| /tmp/cc3dz81k.o: In function `main': | |
| conftest.c:(.text.startup+0x4): undefined reference to `atanpi' | |
| collect2: error: ld returned 1 exit status | |
| configure:27578: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | /* end confdefs.h. */ | |
| | /* Define atanpi to an innocuous variant, in case <limits.h> declares atanpi. | |
| | For example, HP-UX 11i <limits.h> declares gettimeofday. */ | |
| | #define atanpi innocuous_atanpi | |
| | | |
| | /* System header to define __stub macros and hopefully few prototypes, | |
| | which can conflict with char atanpi (); below. | |
| | Prefer <limits.h> to <assert.h> if __STDC__ is defined, since | |
| | <limits.h> exists even on freestanding compilers. */ | |
| | | |
| | #ifdef __STDC__ | |
| | # include <limits.h> | |
| | #else | |
| | # include <assert.h> | |
| | #endif | |
| | | |
| | #undef atanpi | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char atanpi (); | |
| | /* The GNU C library defines this for functions which it implements | |
| | to always fail with ENOSYS. Some functions are actually named | |
| | something starting with __ and the normal name is an alias. */ | |
| | #if defined __stub_atanpi || defined __stub___atanpi | |
| | choke me | |
| | #endif | |
| | | |
| | int | |
| | main () | |
| | { | |
| | return atanpi (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:27578: result: no | |
| configure:27578: checking for atan2pi | |
| configure:27578: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| /tmp/cc4adrlm.o: In function `main': | |
| conftest.c:(.text.startup+0x4): undefined reference to `atan2pi' | |
| collect2: error: ld returned 1 exit status | |
| configure:27578: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | /* end confdefs.h. */ | |
| | /* Define atan2pi to an innocuous variant, in case <limits.h> declares atan2pi. | |
| | For example, HP-UX 11i <limits.h> declares gettimeofday. */ | |
| | #define atan2pi innocuous_atan2pi | |
| | | |
| | /* System header to define __stub macros and hopefully few prototypes, | |
| | which can conflict with char atan2pi (); below. | |
| | Prefer <limits.h> to <assert.h> if __STDC__ is defined, since | |
| | <limits.h> exists even on freestanding compilers. */ | |
| | | |
| | #ifdef __STDC__ | |
| | # include <limits.h> | |
| | #else | |
| | # include <assert.h> | |
| | #endif | |
| | | |
| | #undef atan2pi | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char atan2pi (); | |
| | /* The GNU C library defines this for functions which it implements | |
| | to always fail with ENOSYS. Some functions are actually named | |
| | something starting with __ and the normal name is an alias. */ | |
| | #if defined __stub_atan2pi || defined __stub___atan2pi | |
| | choke me | |
| | #endif | |
| | | |
| | int | |
| | main () | |
| | { | |
| | return atan2pi (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:27578: result: no | |
| configure:27578: checking for cospi | |
| configure:27578: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| /tmp/cczd1nvs.o: In function `main': | |
| conftest.c:(.text.startup+0x4): undefined reference to `cospi' | |
| collect2: error: ld returned 1 exit status | |
| configure:27578: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | /* end confdefs.h. */ | |
| | /* Define cospi to an innocuous variant, in case <limits.h> declares cospi. | |
| | For example, HP-UX 11i <limits.h> declares gettimeofday. */ | |
| | #define cospi innocuous_cospi | |
| | | |
| | /* System header to define __stub macros and hopefully few prototypes, | |
| | which can conflict with char cospi (); below. | |
| | Prefer <limits.h> to <assert.h> if __STDC__ is defined, since | |
| | <limits.h> exists even on freestanding compilers. */ | |
| | | |
| | #ifdef __STDC__ | |
| | # include <limits.h> | |
| | #else | |
| | # include <assert.h> | |
| | #endif | |
| | | |
| | #undef cospi | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char cospi (); | |
| | /* The GNU C library defines this for functions which it implements | |
| | to always fail with ENOSYS. Some functions are actually named | |
| | something starting with __ and the normal name is an alias. */ | |
| | #if defined __stub_cospi || defined __stub___cospi | |
| | choke me | |
| | #endif | |
| | | |
| | int | |
| | main () | |
| | { | |
| | return cospi (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:27578: result: no | |
| configure:27578: checking for exp10 | |
| configure:27578: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27578: $? = 0 | |
| configure:27578: result: yes | |
| configure:27578: checking for pown | |
| configure:27578: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| /tmp/ccYGe4Lz.o: In function `main': | |
| conftest.c:(.text.startup+0x4): undefined reference to `pown' | |
| collect2: error: ld returned 1 exit status | |
| configure:27578: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | /* end confdefs.h. */ | |
| | /* Define pown to an innocuous variant, in case <limits.h> declares pown. | |
| | For example, HP-UX 11i <limits.h> declares gettimeofday. */ | |
| | #define pown innocuous_pown | |
| | | |
| | /* System header to define __stub macros and hopefully few prototypes, | |
| | which can conflict with char pown (); below. | |
| | Prefer <limits.h> to <assert.h> if __STDC__ is defined, since | |
| | <limits.h> exists even on freestanding compilers. */ | |
| | | |
| | #ifdef __STDC__ | |
| | # include <limits.h> | |
| | #else | |
| | # include <assert.h> | |
| | #endif | |
| | | |
| | #undef pown | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char pown (); | |
| | /* The GNU C library defines this for functions which it implements | |
| | to always fail with ENOSYS. Some functions are actually named | |
| | something starting with __ and the normal name is an alias. */ | |
| | #if defined __stub_pown || defined __stub___pown | |
| | choke me | |
| | #endif | |
| | | |
| | int | |
| | main () | |
| | { | |
| | return pown (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:27578: result: no | |
| configure:27578: checking for sinpi | |
| configure:27578: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| /tmp/ccOBqlUA.o: In function `main': | |
| conftest.c:(.text.startup+0x4): undefined reference to `sinpi' | |
| collect2: error: ld returned 1 exit status | |
| configure:27578: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | /* end confdefs.h. */ | |
| | /* Define sinpi to an innocuous variant, in case <limits.h> declares sinpi. | |
| | For example, HP-UX 11i <limits.h> declares gettimeofday. */ | |
| | #define sinpi innocuous_sinpi | |
| | | |
| | /* System header to define __stub macros and hopefully few prototypes, | |
| | which can conflict with char sinpi (); below. | |
| | Prefer <limits.h> to <assert.h> if __STDC__ is defined, since | |
| | <limits.h> exists even on freestanding compilers. */ | |
| | | |
| | #ifdef __STDC__ | |
| | # include <limits.h> | |
| | #else | |
| | # include <assert.h> | |
| | #endif | |
| | | |
| | #undef sinpi | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char sinpi (); | |
| | /* The GNU C library defines this for functions which it implements | |
| | to always fail with ENOSYS. Some functions are actually named | |
| | something starting with __ and the normal name is an alias. */ | |
| | #if defined __stub_sinpi || defined __stub___sinpi | |
| | choke me | |
| | #endif | |
| | | |
| | int | |
| | main () | |
| | { | |
| | return sinpi (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:27578: result: no | |
| configure:27578: checking for tanpi | |
| configure:27578: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| /tmp/ccNneT8G.o: In function `main': | |
| conftest.c:(.text.startup+0x4): undefined reference to `tanpi' | |
| collect2: error: ld returned 1 exit status | |
| configure:27578: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | /* end confdefs.h. */ | |
| | /* Define tanpi to an innocuous variant, in case <limits.h> declares tanpi. | |
| | For example, HP-UX 11i <limits.h> declares gettimeofday. */ | |
| | #define tanpi innocuous_tanpi | |
| | | |
| | /* System header to define __stub macros and hopefully few prototypes, | |
| | which can conflict with char tanpi (); below. | |
| | Prefer <limits.h> to <assert.h> if __STDC__ is defined, since | |
| | <limits.h> exists even on freestanding compilers. */ | |
| | | |
| | #ifdef __STDC__ | |
| | # include <limits.h> | |
| | #else | |
| | # include <assert.h> | |
| | #endif | |
| | | |
| | #undef tanpi | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char tanpi (); | |
| | /* The GNU C library defines this for functions which it implements | |
| | to always fail with ENOSYS. Some functions are actually named | |
| | something starting with __ and the normal name is an alias. */ | |
| | #if defined __stub_tanpi || defined __stub___tanpi | |
| | choke me | |
| | #endif | |
| | | |
| | int | |
| | main () | |
| | { | |
| | return tanpi (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:27578: result: no | |
| configure:27597: checking for fseeko | |
| configure:27597: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27597: $? = 0 | |
| configure:27597: result: yes | |
| configure:27597: checking for ftello | |
| configure:27597: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27597: $? = 0 | |
| configure:27597: result: yes | |
| configure:27597: checking for matherr | |
| configure:27597: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27597: $? = 0 | |
| configure:27597: result: yes | |
| configure:27611: checking whether fcntl exists and is declared | |
| configure:27639: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27639: $? = 0 | |
| configure:27648: result: yes | |
| configure:27661: checking whether getgrgid exists and is declared | |
| configure:27689: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27689: $? = 0 | |
| configure:27698: result: yes | |
| configure:27711: checking whether getpwuid exists and is declared | |
| configure:27739: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27739: $? = 0 | |
| configure:27748: result: yes | |
| configure:27761: checking whether kill exists and is declared | |
| configure:27789: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27789: $? = 0 | |
| configure:27798: result: yes | |
| configure:27761: checking whether sigaction exists and is declared | |
| configure:27789: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27789: $? = 0 | |
| configure:27798: result: yes | |
| configure:27761: checking whether sigaltstack exists and is declared | |
| configure:27789: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27789: $? = 0 | |
| configure:27798: result: yes | |
| configure:27761: checking whether sigemptyset exists and is declared | |
| configure:27789: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27789: $? = 0 | |
| configure:27798: result: yes | |
| configure:27811: checking whether fdopen exists and is declared | |
| configure:27839: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27839: $? = 0 | |
| configure:27848: result: yes | |
| configure:27811: checking whether popen exists and is declared | |
| configure:27839: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27839: $? = 0 | |
| configure:27848: result: yes | |
| configure:27865: checking whether setenv exists and is declared | |
| configure:27893: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27893: $? = 0 | |
| configure:27902: result: yes | |
| configure:27865: checking whether unsetenv exists and is declared | |
| configure:27893: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27893: $? = 0 | |
| configure:27902: result: yes | |
| configure:27915: checking whether getrlimit exists and is declared | |
| configure:27943: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27943: $? = 0 | |
| configure:27952: result: yes | |
| configure:27915: checking whether getrusage exists and is declared | |
| configure:27943: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27943: $? = 0 | |
| configure:27952: result: yes | |
| configure:27915: checking whether getpriority exists and is declared | |
| configure:27943: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27943: $? = 0 | |
| configure:27952: result: yes | |
| configure:27965: checking whether chmod exists and is declared | |
| configure:27993: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27993: $? = 0 | |
| configure:28002: result: yes | |
| configure:27965: checking whether mkfifo exists and is declared | |
| configure:27993: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27993: $? = 0 | |
| configure:28002: result: yes | |
| configure:27965: checking whether stat exists and is declared | |
| configure:27993: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27993: $? = 0 | |
| configure:28002: result: yes | |
| configure:27965: checking whether umask exists and is declared | |
| configure:27993: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:27993: $? = 0 | |
| configure:28002: result: yes | |
| configure:28018: checking whether gettimeofday exists and is declared | |
| configure:28046: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28046: $? = 0 | |
| configure:28055: result: yes | |
| configure:28018: checking whether utimes exists and is declared | |
| configure:28046: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28046: $? = 0 | |
| configure:28055: result: yes | |
| configure:28068: checking whether times exists and is declared | |
| configure:28096: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28096: $? = 0 | |
| configure:28105: result: yes | |
| configure:28118: checking whether gmtime_r exists and is declared | |
| configure:28146: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28146: $? = 0 | |
| configure:28155: result: yes | |
| configure:28118: checking whether localtime_r exists and is declared | |
| configure:28146: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28146: $? = 0 | |
| configure:28155: result: yes | |
| configure:28168: checking whether nl_langinfo exists and is declared | |
| configure:28196: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28196: $? = 0 | |
| configure:28205: result: yes | |
| configure:28218: checking whether access exists and is declared | |
| configure:28248: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28248: $? = 0 | |
| configure:28257: result: yes | |
| configure:28218: checking whether chdir exists and is declared | |
| configure:28248: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28248: $? = 0 | |
| configure:28257: result: yes | |
| configure:28218: checking whether execv exists and is declared | |
| configure:28248: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28248: $? = 0 | |
| configure:28257: result: yes | |
| configure:28218: checking whether ftruncate exists and is declared | |
| configure:28248: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28248: $? = 0 | |
| configure:28257: result: yes | |
| configure:28218: checking whether getcwd exists and is declared | |
| configure:28248: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28248: $? = 0 | |
| configure:28257: result: yes | |
| configure:28218: checking whether geteuid exists and is declared | |
| configure:28248: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28248: $? = 0 | |
| configure:28257: result: yes | |
| configure:28218: checking whether getuid exists and is declared | |
| configure:28248: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28248: $? = 0 | |
| configure:28257: result: yes | |
| configure:28218: checking whether link exists and is declared | |
| configure:28248: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28248: $? = 0 | |
| configure:28257: result: yes | |
| configure:28218: checking whether readlink exists and is declared | |
| configure:28248: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28248: $? = 0 | |
| configure:28257: result: yes | |
| configure:28218: checking whether symlink exists and is declared | |
| configure:28248: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28248: $? = 0 | |
| configure:28257: result: yes | |
| configure:28218: checking whether sysconf exists and is declared | |
| configure:28248: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28248: $? = 0 | |
| configure:28257: result: yes | |
| configure:28271: checking whether sched_setaffinity exists and is declared | |
| configure:28299: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28299: $? = 0 | |
| configure:28308: result: yes | |
| configure:28271: checking whether sched_getaffinity exists and is declared | |
| configure:28299: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28299: $? = 0 | |
| configure:28308: result: yes | |
| configure:28322: checking whether utime exists and is declared | |
| configure:28350: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ldl -lm >&5 | |
| configure:28350: $? = 0 | |
| configure:28359: result: yes | |
| configure:28374: checking for clock_gettime in -lrt | |
| configure:28407: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28407: $? = 0 | |
| configure:28416: result: yes | |
| configure:28430: checking whether clock_gettime exists and is declared | |
| configure:28458: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28458: $? = 0 | |
| configure:28467: result: yes | |
| configure:28430: checking whether timespec_get exists and is declared | |
| configure:28458: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28458: $? = 0 | |
| configure:28467: result: yes | |
| configure:28482: checking for putenv | |
| configure:28482: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28482: $? = 0 | |
| configure:28482: result: yes | |
| configure:28491: checking whether putenv is declared | |
| configure:28491: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:28491: $? = 0 | |
| configure:28491: result: yes | |
| configure:28506: checking for vasprintf | |
| configure:28506: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28506: $? = 0 | |
| configure:28506: result: yes | |
| configure:28515: checking whether vasprintf is declared | |
| configure:28515: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:28515: $? = 0 | |
| configure:28515: result: yes | |
| configure:28530: checking for mempcpy | |
| configure:28530: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28530: $? = 0 | |
| configure:28530: result: yes | |
| configure:28543: checking for realpath | |
| configure:28543: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28543: $? = 0 | |
| configure:28543: result: yes | |
| configure:28552: checking whether realpath is declared | |
| configure:28552: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:28552: $? = 0 | |
| configure:28552: result: yes | |
| configure:28572: checking whether glob exists and is declared | |
| configure:28602: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28602: $? = 0 | |
| configure:28611: result: yes | |
| configure:28663: checking for isnan | |
| configure:28663: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28663: $? = 0 | |
| configure:28663: result: yes | |
| configure:28672: checking whether isfinite is declared | |
| configure:28672: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:28672: $? = 0 | |
| configure:28672: result: yes | |
| configure:28683: checking whether isnan is declared | |
| configure:28683: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:28683: $? = 0 | |
| configure:28683: result: yes | |
| configure:28695: checking whether you have IEEE 754 floating-point arithmetic | |
| configure:28707: result: yes | |
| configure:28720: checking whether putenv("FOO") can unset an environment variable | |
| configure:28750: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28750: $? = 0 | |
| configure:28750: ./conftest | |
| configure:28750: $? = 0 | |
| configure:28760: result: yes | |
| configure:28770: checking whether putenv("FOO=") can unset an environment variable | |
| configure:28800: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28800: $? = 0 | |
| configure:28800: ./conftest | |
| configure:28800: $? = 1 | |
| configure: program exited with status 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | /* end confdefs.h. */ | |
| | | |
| | #include "confdefs.h" | |
| | #include <stdlib.h> | |
| | #include <string.h> | |
| | int main() | |
| | { | |
| | char *p; | |
| | #ifdef HAVE_PUTENV | |
| | putenv("R_TEST=testit"); | |
| | p = getenv("R_TEST"); | |
| | if(!p) exit(10); | |
| | if(strcmp(p, "testit")) exit(11); | |
| | putenv("R_TEST="); | |
| | p = getenv("R_TEST"); | |
| | if(!p) exit(0); | |
| | #endif | |
| | exit(1); | |
| | } | |
| | | |
| configure:28810: result: no | |
| configure:28825: checking for nl_langinfo and CODESET | |
| configure:28849: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28849: $? = 0 | |
| configure:28858: result: yes | |
| configure:28895: checking for mkdtemp | |
| configure:28895: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28895: $? = 0 | |
| configure:28895: result: yes | |
| configure:28908: checking for strdup | |
| configure:28908: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28908: $? = 0 | |
| configure:28908: result: yes | |
| configure:28921: checking for strncasecmp | |
| configure:28921: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:28921: $? = 0 | |
| configure:28921: result: yes | |
| configure:28936: checking whether mkdtemp is declared | |
| configure:28936: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:28936: $? = 0 | |
| configure:28936: result: yes | |
| configure:28946: checking whether strdup is declared | |
| configure:28946: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:28946: $? = 0 | |
| configure:28946: result: yes | |
| configure:28956: checking whether strncasecmp is declared | |
| configure:28956: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:28956: $? = 0 | |
| configure:28956: result: yes | |
| configure:28968: checking for library containing connect | |
| configure:29007: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29007: $? = 0 | |
| configure:29024: result: none required | |
| configure:29033: checking for library containing gethostbyname | |
| configure:29072: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29072: $? = 0 | |
| configure:29089: result: none required | |
| configure:29097: checking for library containing xdr_string | |
| configure:29136: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29136: $? = 0 | |
| configure:29153: result: none required | |
| configure:29161: checking for __setfpucw | |
| configure:29161: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| /tmp/ccde8AOQ.o: In function `main': | |
| conftest.c:(.text.startup+0x4): undefined reference to `__setfpucw' | |
| collect2: error: ld returned 1 exit status | |
| configure:29161: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | /* end confdefs.h. */ | |
| | /* Define __setfpucw to an innocuous variant, in case <limits.h> declares __setfpucw. | |
| | For example, HP-UX 11i <limits.h> declares gettimeofday. */ | |
| | #define __setfpucw innocuous___setfpucw | |
| | | |
| | /* System header to define __stub macros and hopefully few prototypes, | |
| | which can conflict with char __setfpucw (); below. | |
| | Prefer <limits.h> to <assert.h> if __STDC__ is defined, since | |
| | <limits.h> exists even on freestanding compilers. */ | |
| | | |
| | #ifdef __STDC__ | |
| | # include <limits.h> | |
| | #else | |
| | # include <assert.h> | |
| | #endif | |
| | | |
| | #undef __setfpucw | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char __setfpucw (); | |
| | /* The GNU C library defines this for functions which it implements | |
| | to always fail with ENOSYS. Some functions are actually named | |
| | something starting with __ and the normal name is an alias. */ | |
| | #if defined __stub___setfpucw || defined __stub_____setfpucw | |
| | choke me | |
| | #endif | |
| | | |
| | int | |
| | main () | |
| | { | |
| | return __setfpucw (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:29161: result: no | |
| configure:29204: checking for working calloc | |
| configure:29222: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29222: $? = 0 | |
| configure:29222: ./conftest | |
| configure:29222: $? = 0 | |
| configure:29232: result: yes | |
| configure:29241: checking for working isfinite | |
| configure:29264: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29264: $? = 0 | |
| configure:29264: ./conftest | |
| configure:29264: $? = 0 | |
| configure:29274: result: yes | |
| configure:29284: checking for working log1p | |
| configure:29325: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29325: $? = 0 | |
| configure:29325: ./conftest | |
| configure:29325: $? = 0 | |
| configure:29335: result: yes | |
| configure:29347: checking whether ftell works correctly on files opened for append | |
| configure:29376: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29376: $? = 0 | |
| configure:29376: ./conftest | |
| configure:29376: $? = 0 | |
| configure:29386: result: yes | |
| configure:29395: checking for working sigaction | |
| configure:29424: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29424: $? = 0 | |
| configure:29424: ./conftest | |
| configure:29424: $? = 0 | |
| configure:29434: result: yes | |
| configure:29451: checking whether mktime sets errno | |
| configure:29480: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29480: $? = 0 | |
| configure:29480: ./conftest | |
| configure:29480: $? = 1 | |
| configure: program exited with status 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | /* end confdefs.h. */ | |
| | | |
| | #include <stdlib.h> | |
| | #include <time.h> | |
| | #include <errno.h> | |
| | | |
| | int main() | |
| | { | |
| | struct tm tm; | |
| | /* It's hard to know what is an error, since mktime is allowed to | |
| | fix up times and there are 64-bit time_t about. | |
| | But this works for now (yes on Solaris, no on glibc). */ | |
| | tm.tm_year = 3000; tm.tm_mon = 0; tm.tm_mday = 0; | |
| | tm.tm_hour = 0; tm.tm_min = 0; tm.tm_sec = 0; tm.tm_isdst = -1; | |
| | errno = 0; | |
| | mktime(&tm); | |
| | exit(errno == 0); | |
| | } | |
| | | |
| configure:29490: result: no | |
| configure:29498: checking whether mktime works correctly outside 1902-2037 | |
| configure:29536: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29536: $? = 0 | |
| configure:29536: ./conftest | |
| configure:29536: $? = 0 | |
| configure:29546: result: yes | |
| configure:29556: checking complex.h usability | |
| configure:29556: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:29556: $? = 0 | |
| configure:29556: result: yes | |
| configure:29556: checking complex.h presence | |
| configure:29556: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:29556: $? = 0 | |
| configure:29556: result: yes | |
| configure:29556: checking for complex.h | |
| configure:29556: result: yes | |
| configure:29565: checking for double complex | |
| configure:29565: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:29565: $? = 0 | |
| configure:29565: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:201:29: error: expected expression before ')' token | |
| if (sizeof ((double complex))) | |
| ^ | |
| configure:29565: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | /* end confdefs.h. */ | |
| | #include <complex.h> | |
| | | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((double complex))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:29565: result: yes | |
| configure:29574: checking whether C99 double complex is supported | |
| configure:29576: result: yes | |
| configure:29585: checking whether cabs exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether carg exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether cexp exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether clog exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether csqrt exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether cpow exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether ccos exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether csin exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether ctan exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether cacos exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether casin exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether catan exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether ccosh exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether csinh exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29585: checking whether ctanh exists and is declared | |
| configure:29613: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:29613: $? = 0 | |
| configure:29622: result: yes | |
| configure:29635: checking whether 'struct tm' includes tm_zone | |
| configure:29653: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:29653: $? = 0 | |
| configure:29660: result: yes | |
| configure:29668: checking whether 'struct tm' includes tm_gmtoff | |
| configure:29687: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:29687: $? = 0 | |
| configure:29694: result: yes | |
| configure:29740: checking for dgemm_ in -framework Accelerate | |
| configure:29761: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -framework Accelerate -lgfortran -lm -lquadmath -lrt -ldl -lm >&5 | |
| gcc-5: error: Accelerate: No such file or directory | |
| gcc-5: error: unrecognized command line option '-framework' | |
| configure:29761: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | /* end confdefs.h. */ | |
| | void xerbla_(char *srname, int *info){} | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | dgemm_() | |
| | ; | |
| | return 0; | |
| | } | |
| configure:29768: result: no | |
| configure:29777: checking for dgemm_ | |
| configure:29777: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lgfortran -lm -lquadmath -lrt -ldl -lm >&5 | |
| /tmp/ccpIlJti.o: In function `main': | |
| conftest.c:(.text.startup+0x4): undefined reference to `dgemm_' | |
| collect2: error: ld returned 1 exit status | |
| configure:29777: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | /* end confdefs.h. */ | |
| | /* Define dgemm_ to an innocuous variant, in case <limits.h> declares dgemm_. | |
| | For example, HP-UX 11i <limits.h> declares gettimeofday. */ | |
| | #define dgemm_ innocuous_dgemm_ | |
| | | |
| | /* System header to define __stub macros and hopefully few prototypes, | |
| | which can conflict with char dgemm_ (); below. | |
| | Prefer <limits.h> to <assert.h> if __STDC__ is defined, since | |
| | <limits.h> exists even on freestanding compilers. */ | |
| | | |
| | #ifdef __STDC__ | |
| | # include <limits.h> | |
| | #else | |
| | # include <assert.h> | |
| | #endif | |
| | | |
| | #undef dgemm_ | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char dgemm_ (); | |
| | /* The GNU C library defines this for functions which it implements | |
| | to always fail with ENOSYS. Some functions are actually named | |
| | something starting with __ and the normal name is an alias. */ | |
| | #if defined __stub_dgemm_ || defined __stub___dgemm_ | |
| | choke me | |
| | #endif | |
| | | |
| | int | |
| | main () | |
| | { | |
| | return dgemm_ (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:29777: result: no | |
| configure:29786: checking for ATL_xerbla in -latlas | |
| configure:29819: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -latlas -lgfortran -lm -lquadmath -lrt -ldl -lm >&5 | |
| /bio/linuxbrew/bin/ld: cannot find -latlas | |
| collect2: error: ld returned 1 exit status | |
| configure:29819: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | /* end confdefs.h. */ | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char ATL_xerbla (); | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | return ATL_xerbla (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:29828: result: no | |
| configure:29889: checking for dgemm_ in -lblas | |
| configure:29922: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lblas -lgfortran -lm -lquadmath -lrt -ldl -lm >&5 | |
| /bio/linuxbrew/bin/ld: cannot find -lblas | |
| collect2: error: ld returned 1 exit status | |
| configure:29922: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | /* end confdefs.h. */ | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char dgemm_ (); | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | return dgemm_ (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:29932: result: no | |
| configure:30126: checking for dgemm_ in -lblas | |
| configure:30169: result: no | |
| configure:30230: checking for dgemm_ in -lblas | |
| configure:30273: result: no | |
| configure:30831: checking iconv.h usability | |
| configure:30831: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:30831: $? = 0 | |
| configure:30831: result: yes | |
| configure:30831: checking iconv.h presence | |
| configure:30831: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:30831: $? = 0 | |
| configure:30831: result: yes | |
| configure:30831: checking for iconv.h | |
| configure:30831: result: yes | |
| configure:30843: checking for iconv | |
| configure:30874: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:30874: $? = 0 | |
| configure:30917: result: yes | |
| configure:30924: checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*" | |
| configure:30992: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:30992: $? = 0 | |
| configure:30992: ./conftest | |
| configure:30992: $? = 0 | |
| configure:31002: result: yes | |
| configure:31016: checking for iconvlist | |
| configure:31047: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| /tmp/cc0vUckF.o: In function `main': | |
| conftest.c:(.text.startup+0xd): undefined reference to `iconvlist' | |
| collect2: error: ld returned 1 exit status | |
| configure:31047: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdlib.h> | |
| | #ifdef HAVE_ICONV_H | |
| | #include <iconv.h> | |
| | #endif | |
| | static int count_one (unsigned int namescount, char * *names, void *data) | |
| | {return 0;} | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | iconvlist(count_one, NULL); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:31054: result: no | |
| configure:31090: checking for iconv | |
| configure:31120: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31120: $? = 0 | |
| configure:31160: result: yes | |
| configure:31181: checking for iconv declaration | |
| configure:31218: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:31218: $? = 0 | |
| configure:31229: result: | |
| extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); | |
| configure:31247: checking wchar.h usability | |
| configure:31247: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:31247: $? = 0 | |
| configure:31247: result: yes | |
| configure:31247: checking wchar.h presence | |
| configure:31247: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:31247: $? = 0 | |
| configure:31247: result: yes | |
| configure:31247: checking for wchar.h | |
| configure:31247: result: yes | |
| configure:31247: checking wctype.h usability | |
| configure:31247: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:31247: $? = 0 | |
| configure:31247: result: yes | |
| configure:31247: checking wctype.h presence | |
| configure:31247: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:31247: $? = 0 | |
| configure:31247: result: yes | |
| configure:31247: checking for wctype.h | |
| configure:31247: result: yes | |
| configure:31270: checking whether mbrtowc exists and is declared | |
| configure:31298: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31298: $? = 0 | |
| configure:31307: result: yes | |
| configure:31270: checking whether wcrtomb exists and is declared | |
| configure:31298: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31298: $? = 0 | |
| configure:31307: result: yes | |
| configure:31270: checking whether wcscoll exists and is declared | |
| configure:31298: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31298: $? = 0 | |
| configure:31307: result: yes | |
| configure:31270: checking whether wcsftime exists and is declared | |
| configure:31298: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31298: $? = 0 | |
| configure:31307: result: yes | |
| configure:31270: checking whether wcstod exists and is declared | |
| configure:31298: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31298: $? = 0 | |
| configure:31307: result: yes | |
| configure:31320: checking whether mbstowcs exists and is declared | |
| configure:31348: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31348: $? = 0 | |
| configure:31357: result: yes | |
| configure:31320: checking whether wcstombs exists and is declared | |
| configure:31348: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31348: $? = 0 | |
| configure:31357: result: yes | |
| configure:31370: checking whether wctrans exists and is declared | |
| configure:31399: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31399: $? = 0 | |
| configure:31408: result: yes | |
| configure:31370: checking whether iswblank exists and is declared | |
| configure:31399: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31399: $? = 0 | |
| configure:31408: result: yes | |
| configure:31370: checking whether wctype exists and is declared | |
| configure:31399: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31399: $? = 0 | |
| configure:31408: result: yes | |
| configure:31370: checking whether iswctype exists and is declared | |
| configure:31399: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:31399: $? = 0 | |
| configure:31408: result: yes | |
| configure:31432: checking for wctrans_t | |
| configure:31432: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:31432: $? = 0 | |
| configure:31432: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:236:24: error: expected expression before ')' token | |
| if (sizeof ((wctrans_t))) | |
| ^ | |
| configure:31432: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | /* end confdefs.h. */ | |
| | #include <wchar.h> | |
| | #include <wctype.h> | |
| | | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((wctrans_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:31432: result: yes | |
| configure:31443: checking for mbstate_t | |
| configure:31443: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:31443: $? = 0 | |
| configure:31443: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:237:24: error: expected expression before ')' token | |
| if (sizeof ((mbstate_t))) | |
| ^ | |
| configure:31443: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | /* end confdefs.h. */ | |
| | #include <wchar.h> | |
| | #include <wctype.h> | |
| | | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((mbstate_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:31443: result: yes | |
| configure:31469: checking for ICU | |
| configure:31504: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm -licuuc -licui18n >&5 | |
| /tmp/ccyH9fmz.o: In function `main': | |
| conftest.c:(.text.startup+0x1b): undefined reference to `ucol_open_56' | |
| conftest.c:(.text.startup+0x45): undefined reference to `uiter_setUTF8_56' | |
| conftest.c:(.text.startup+0x56): undefined reference to `ucol_strcollIter_56' | |
| collect2: error: ld returned 1 exit status | |
| configure:31504: $? = 1 | |
| configure: program exited with status 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | #define HAVE_MBSTATE_T 1 | |
| | /* end confdefs.h. */ | |
| | | |
| | #include <unicode/utypes.h> | |
| | #include <unicode/ucol.h> | |
| | #include <unicode/uloc.h> | |
| | #include <unicode/uiter.h> | |
| | | |
| | #include <stdlib.h> | |
| | | |
| | int main () { | |
| | UErrorCode status = U_ZERO_ERROR; | |
| | UCollator *collator; | |
| | UCharIterator aIter; | |
| | | |
| | collator = ucol_open(NULL, &status); | |
| | if (U_FAILURE(status)) exit(1); | |
| | /* check if ICU is complete enough */ | |
| | uiter_setUTF8(&aIter, "abc", 3); | |
| | int result = ucol_strcollIter(collator, &aIter, &aIter, &status); | |
| | if (U_FAILURE(status)) exit(1); | |
| | exit(0); | |
| | } | |
| | | |
| configure:31516: result: no | |
| configure:31600: checking for X | |
| configure:31708: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:31708: $? = 0 | |
| configure:31747: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lX11 -lrt -ldl -lm >&5 | |
| configure:31747: $? = 0 | |
| configure:31797: result: libraries , headers | |
| configure:31920: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm -lX11 >&5 | |
| configure:31920: $? = 0 | |
| configure:32034: checking for gethostbyname | |
| configure:32034: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:32034: $? = 0 | |
| configure:32034: result: yes | |
| configure:32147: checking for connect | |
| configure:32147: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:32147: $? = 0 | |
| configure:32147: result: yes | |
| configure:32204: checking for remove | |
| configure:32204: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:32204: $? = 0 | |
| configure:32204: result: yes | |
| configure:32261: checking for shmat | |
| configure:32261: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:32261: $? = 0 | |
| configure:32261: result: yes | |
| configure:32327: checking for IceConnectionNumber in -lICE | |
| configure:32360: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lICE -lrt -ldl -lm >&5 | |
| configure:32360: $? = 0 | |
| configure:32369: result: yes | |
| configure:32384: checking X11/Intrinsic.h usability | |
| configure:32384: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:32384: $? = 0 | |
| configure:32384: result: yes | |
| configure:32384: checking X11/Intrinsic.h presence | |
| configure:32384: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:32384: $? = 0 | |
| configure:32384: result: yes | |
| configure:32384: checking for X11/Intrinsic.h | |
| configure:32384: result: yes | |
| configure:32392: checking for XtToolkitInitialize in -lXt | |
| configure:32425: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lXt -lX11 -lrt -ldl -lm >&5 | |
| configure:32425: $? = 0 | |
| configure:32434: result: yes | |
| configure:32457: result: using X11 ... yes | |
| configure:32473: checking for KeySym | |
| configure:32473: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:32473: $? = 0 | |
| configure:32473: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:238:21: error: expected expression before ')' token | |
| if (sizeof ((KeySym))) | |
| ^ | |
| configure:32473: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | #define HAVE_MBSTATE_T 1 | |
| | #define HAVE_X11 1 | |
| | /* end confdefs.h. */ | |
| | #include <X11/X.h> | |
| | | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((KeySym))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:32473: result: yes | |
| configure:32492: checking X11/Xmu/Atoms.h usability | |
| configure:32492: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:32492: $? = 0 | |
| configure:32492: result: yes | |
| configure:32492: checking X11/Xmu/Atoms.h presence | |
| configure:32492: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:32492: $? = 0 | |
| configure:32492: result: yes | |
| configure:32492: checking for X11/Xmu/Atoms.h | |
| configure:32492: result: yes | |
| configure:32500: checking for XmuInternAtom in -lXmu | |
| configure:32533: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lXmu -lX11 -lXt -lrt -ldl -lm >&5 | |
| configure:32533: $? = 0 | |
| configure:32542: result: yes | |
| configure:32567: checking whether pkg-config knows about cairo and pango | |
| configure:32579: result: yes | |
| configure:32613: checking whether cairo including pango is >= 1.2 and works | |
| configure:32636: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/harfbuzz/1.1.3/include/harfbuzz -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/cairo/1.14.6_1/include/cairo -I/bio/linuxbrew/Cellar/glib/2.46.2/include/glib-2.0 -I/bio/linuxbrew/Cellar/glib/2.46.2/lib/glib-2.0/include -I/bio/linuxbrew/Cellar/pixman/0.34.0/include/pixman-1 -I/bio/linuxbrew/Cellar/fontconfig/2.11.1_2/include -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm -L/bio/linuxbrew/Cellar/pango/1.38.1/lib -L/bio/linuxbrew/Cellar/glib/2.46.2/lib -L/bio/linuxbrew/Cellar/libpng/1.6.21/lib -L/bio/linuxbrew/Cellar/cairo/1.14.6_1/lib -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo >&5 | |
| configure:32636: $? = 0 | |
| configure:32647: result: yes | |
| configure:32905: checking for tclConfig.sh | |
| configure:32938: result: no | |
| configure:32947: checking for tclConfig.sh in library (sub)directories | |
| configure:32965: result: /usr/lib64/tclConfig.sh | |
| configure:32980: checking for tkConfig.sh | |
| configure:33013: result: no | |
| configure:33022: checking for tkConfig.sh in library (sub)directories | |
| configure:33040: result: /usr/lib64/tkConfig.sh | |
| configure:33104: checking tcl.h usability | |
| configure:33104: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I/usr/include conftest.c >&5 | |
| configure:33104: $? = 0 | |
| configure:33104: result: yes | |
| configure:33104: checking tcl.h presence | |
| configure:33104: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I/usr/include conftest.c | |
| configure:33104: $? = 0 | |
| configure:33104: result: yes | |
| configure:33104: checking for tcl.h | |
| configure:33104: result: yes | |
| configure:33183: checking tk.h usability | |
| configure:33183: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I/usr/include -I/usr/include conftest.c >&5 | |
| configure:33183: $? = 0 | |
| configure:33183: result: yes | |
| configure:33183: checking tk.h presence | |
| configure:33183: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I/usr/include -I/usr/include conftest.c | |
| configure:33183: $? = 0 | |
| configure:33183: result: yes | |
| configure:33183: checking for tk.h | |
| configure:33183: result: yes | |
| configure:33480: checking whether compiling/linking Tcl/Tk code works | |
| configure:33518: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -I/usr/include -I/usr/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm -L/usr/lib64 -ltcl8.5 -L/usr/lib64 -ltk8.5 -lX11 >&5 | |
| configure:33518: $? = 0 | |
| configure:33534: result: yes | |
| configure:33559: checking for BSD networking | |
| configure:33574: result: yes | |
| configure:33595: checking if jpeglib version >= 6b | |
| configure:33617: result: yes | |
| configure:33622: checking for jpeg_destroy_compress in -ljpeg | |
| configure:33655: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ljpeg -lrt -ldl -lm -lrt -ldl -lm >&5 | |
| configure:33655: $? = 0 | |
| configure:33664: result: yes | |
| configure:33681: checking for main in -lz | |
| configure:33708: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lz -lrt -ldl -lm >&5 | |
| configure:33708: $? = 0 | |
| configure:33717: result: yes | |
| configure:33726: checking if libpng version >= 1.2.7 | |
| configure:33748: result: yes | |
| configure:33754: checking for png_create_write_struct in -lpng | |
| configure:33787: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpng -lz -lrt -ldl -lm -lrt -ldl -lm >&5 | |
| configure:33787: $? = 0 | |
| configure:33796: result: yes | |
| configure:33815: checking tiffio.h usability | |
| configure:33815: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:33815: $? = 0 | |
| configure:33815: result: yes | |
| configure:33815: checking tiffio.h presence | |
| configure:33815: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:33815: $? = 0 | |
| configure:33815: result: yes | |
| configure:33815: checking for tiffio.h | |
| configure:33815: result: yes | |
| configure:33827: checking for TIFFOpen in -ltiff | |
| configure:33860: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -ltiff -ljpeg -lpng -lz -lrt -ldl -lm >&5 | |
| configure:33860: $? = 0 | |
| configure:33869: result: yes | |
| configure:33950: checking rpc/types.h usability | |
| configure:33950: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:33950: $? = 0 | |
| configure:33950: result: yes | |
| configure:33950: checking rpc/types.h presence | |
| configure:33950: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:33950: $? = 0 | |
| configure:33950: result: yes | |
| configure:33950: checking for rpc/types.h | |
| configure:33950: result: yes | |
| configure:33957: checking for rpc/xdr.h | |
| configure:33957: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:33957: $? = 0 | |
| configure:33957: result: yes | |
| configure:34001: checking for XDR support | |
| configure:34003: result: yes | |
| configure:34018: checking for inflateInit2_ in -lz | |
| configure:34051: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lz -lrt -ldl -lm >&5 | |
| configure:34051: $? = 0 | |
| configure:34060: result: yes | |
| configure:34069: checking zlib.h usability | |
| configure:34069: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:34069: $? = 0 | |
| configure:34069: result: yes | |
| configure:34069: checking zlib.h presence | |
| configure:34069: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:34069: $? = 0 | |
| configure:34069: result: yes | |
| configure:34069: checking for zlib.h | |
| configure:34069: result: yes | |
| configure:34079: checking if zlib version >= 1.2.5 | |
| configure:34104: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lrt -ldl -lm >&5 | |
| configure:34104: $? = 0 | |
| configure:34104: ./conftest | |
| configure:34104: $? = 0 | |
| configure:34114: result: yes | |
| configure:34122: checking whether zlib support needs to be compiled | |
| configure:34125: result: no | |
| configure:34185: checking for BZ2_bzlibVersion in -lbz2 | |
| configure:34218: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:34218: $? = 0 | |
| configure:34227: result: yes | |
| configure:34238: checking bzlib.h usability | |
| configure:34238: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:34238: $? = 0 | |
| configure:34238: result: yes | |
| configure:34238: checking bzlib.h presence | |
| configure:34238: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:34238: $? = 0 | |
| configure:34238: result: yes | |
| configure:34238: checking for bzlib.h | |
| configure:34238: result: yes | |
| configure:34255: checking if bzip2 version >= 1.0.6 | |
| configure:34283: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:34283: $? = 0 | |
| configure:34283: ./conftest | |
| configure:34283: $? = 0 | |
| configure:34300: result: yes | |
| configure:34306: checking whether bzip2 support needs to be compiled | |
| configure:34309: result: no | |
| configure:34328: checking for lzma_version_number in -llzma | |
| configure:34361: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:34361: $? = 0 | |
| configure:34370: result: yes | |
| configure:34381: checking lzma.h usability | |
| configure:34381: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:34381: $? = 0 | |
| configure:34381: result: yes | |
| configure:34381: checking lzma.h presence | |
| configure:34381: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:34381: $? = 0 | |
| configure:34381: result: yes | |
| configure:34381: checking for lzma.h | |
| configure:34381: result: yes | |
| configure:34395: checking if lzma version >= 5.0.3 | |
| configure:34426: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:34426: $? = 0 | |
| configure:34426: ./conftest | |
| configure:34426: $? = 0 | |
| configure:34443: result: yes | |
| configure:34470: checking for pcre_fullinfo in -lpcre | |
| configure:34503: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:34503: $? = 0 | |
| configure:34512: result: yes | |
| configure:34524: checking pcre.h usability | |
| configure:34524: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:34524: $? = 0 | |
| configure:34524: result: yes | |
| configure:34524: checking pcre.h presence | |
| configure:34524: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:34524: $? = 0 | |
| configure:34524: result: yes | |
| configure:34524: checking for pcre.h | |
| configure:34524: result: yes | |
| configure:34524: checking pcre/pcre.h usability | |
| configure:34524: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| conftest.c:286:23: fatal error: pcre/pcre.h: No such file or directory | |
| compilation terminated. | |
| configure:34524: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | #define HAVE_MBSTATE_T 1 | |
| | #define HAVE_X11 1 | |
| | #define HAVE_KEYSYM 1 | |
| | #define HAVE_X11_Xmu 1 | |
| | #define HAVE_PANGOCAIRO 1 | |
| | #define HAVE_WORKING_CAIRO 1 | |
| | #define HAVE_CAIRO_PDF 1 | |
| | #define HAVE_CAIRO_PS 1 | |
| | #define HAVE_CAIRO_SVG 1 | |
| | #define HAVE_TCLTK 1 | |
| | #define HAVE_BSD_NETWORKING 1 | |
| | #define HAVE_SOCKETS 1 | |
| | #define HAVE_INTERNET 1 | |
| | #define SUPPORT_LIBXML 1 | |
| | #define HAVE_JPEG 1 | |
| | #define HAVE_PNG 1 | |
| | #define HAVE_TIFFIO_H 1 | |
| | #define HAVE_TIFF 1 | |
| | #define HAVE_BZLIB_H 1 | |
| | #define HAVE_LZMA_H 1 | |
| | #define HAVE_LZMA 1 | |
| | #define HAVE_PCRE_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | #include <pcre/pcre.h> | |
| configure:34524: result: no | |
| configure:34524: checking pcre/pcre.h presence | |
| configure:34524: /bio/linuxbrew/bin/gcc-5 -E -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| conftest.c:253:23: fatal error: pcre/pcre.h: No such file or directory | |
| compilation terminated. | |
| configure:34524: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | #define HAVE_MBSTATE_T 1 | |
| | #define HAVE_X11 1 | |
| | #define HAVE_KEYSYM 1 | |
| | #define HAVE_X11_Xmu 1 | |
| | #define HAVE_PANGOCAIRO 1 | |
| | #define HAVE_WORKING_CAIRO 1 | |
| | #define HAVE_CAIRO_PDF 1 | |
| | #define HAVE_CAIRO_PS 1 | |
| | #define HAVE_CAIRO_SVG 1 | |
| | #define HAVE_TCLTK 1 | |
| | #define HAVE_BSD_NETWORKING 1 | |
| | #define HAVE_SOCKETS 1 | |
| | #define HAVE_INTERNET 1 | |
| | #define SUPPORT_LIBXML 1 | |
| | #define HAVE_JPEG 1 | |
| | #define HAVE_PNG 1 | |
| | #define HAVE_TIFFIO_H 1 | |
| | #define HAVE_TIFF 1 | |
| | #define HAVE_BZLIB_H 1 | |
| | #define HAVE_LZMA_H 1 | |
| | #define HAVE_LZMA 1 | |
| | #define HAVE_PCRE_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <pcre/pcre.h> | |
| configure:34524: result: no | |
| configure:34524: checking for pcre/pcre.h | |
| configure:34524: result: no | |
| configure:34545: checking if PCRE version >= 8.10, < 10.0 and has UTF-8 support | |
| configure:34582: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:34582: $? = 0 | |
| configure:34582: ./conftest | |
| configure:34582: $? = 0 | |
| configure:34592: result: yes | |
| configure:34599: checking whether PCRE support needs to be compiled | |
| configure:34602: result: no | |
| configure:34711: checking for curl-config | |
| configure:34729: found /bio/linuxbrew/bin/curl-config | |
| configure:34741: result: /bio/linuxbrew/bin/curl-config | |
| configure:34764: checking if libcurl version >= 7.28.0 | |
| configure:34793: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -L/bio/linuxbrew/Cellar/curl/7.47.1/lib -lcurl -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:34793: $? = 0 | |
| configure:34793: ./conftest | |
| configure:34793: $? = 0 | |
| configure:34803: result: yes | |
| configure:34812: checking curl/curl.h usability | |
| configure:34812: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c >&5 | |
| configure:34812: $? = 0 | |
| configure:34812: result: yes | |
| configure:34812: checking curl/curl.h presence | |
| configure:34812: /bio/linuxbrew/bin/gcc-5 -E -I/bio/linuxbrew/Cellar/curl/7.47.1/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include conftest.c | |
| configure:34812: $? = 0 | |
| configure:34812: result: yes | |
| configure:34812: checking for curl/curl.h | |
| configure:34812: result: yes | |
| configure:34829: checking whether leap seconds are treated according to POSIX | |
| configure:34856: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:34856: $? = 0 | |
| configure:34856: ./conftest | |
| configure:34856: $? = 1 | |
| configure: program exited with status 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | #define HAVE_MBSTATE_T 1 | |
| | #define HAVE_X11 1 | |
| | #define HAVE_KEYSYM 1 | |
| | #define HAVE_X11_Xmu 1 | |
| | #define HAVE_PANGOCAIRO 1 | |
| | #define HAVE_WORKING_CAIRO 1 | |
| | #define HAVE_CAIRO_PDF 1 | |
| | #define HAVE_CAIRO_PS 1 | |
| | #define HAVE_CAIRO_SVG 1 | |
| | #define HAVE_TCLTK 1 | |
| | #define HAVE_BSD_NETWORKING 1 | |
| | #define HAVE_SOCKETS 1 | |
| | #define HAVE_INTERNET 1 | |
| | #define SUPPORT_LIBXML 1 | |
| | #define HAVE_JPEG 1 | |
| | #define HAVE_PNG 1 | |
| | #define HAVE_TIFFIO_H 1 | |
| | #define HAVE_TIFF 1 | |
| | #define HAVE_BZLIB_H 1 | |
| | #define HAVE_LZMA_H 1 | |
| | #define HAVE_LZMA 1 | |
| | #define HAVE_PCRE_H 1 | |
| | #define HAVE_CURL_CURL_H 1 | |
| | /* end confdefs.h. */ | |
| | | |
| | #include <stdlib.h> | |
| | #include <time.h> | |
| | #include <stdio.h> | |
| | #include "confdefs.h" | |
| | | |
| | int main () { | |
| | struct tm *tm; | |
| | time_t ct = 0; /* required on 64bit AIX */ | |
| | | |
| | ctime(&ct); | |
| | ct = ct - (ct % 60); | |
| | tm = gmtime(&ct); | |
| | if(tm->tm_sec == 0) exit(1); else exit(0); | |
| | } | |
| | | |
| configure:34866: result: yes | |
| configure:34876: checking for inline | |
| configure:34892: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:34892: $? = 0 | |
| configure:34900: result: inline | |
| configure:34924: checking for sys/time.h | |
| configure:34924: result: yes | |
| configure:34924: checking for stdlib.h | |
| configure:34924: result: yes | |
| configure:34924: checking for unistd.h | |
| configure:34924: result: yes | |
| configure:34924: checking for sys/param.h | |
| configure:34924: result: yes | |
| configure:34941: checking for struct stat.st_atim.tv_nsec | |
| configure:34941: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:34941: $? = 0 | |
| configure:34941: result: yes | |
| configure:34950: checking whether struct stat.st_atim is of type struct timespec | |
| configure:34985: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:34985: $? = 0 | |
| configure:34992: result: yes | |
| configure:35046: checking for setitimer | |
| configure:35046: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:35046: $? = 0 | |
| configure:35046: result: yes | |
| configure:35077: checking for special C compiler options needed for large files | |
| configure:35130: result: no | |
| configure:35136: checking for _FILE_OFFSET_BITS value needed for large files | |
| configure:35169: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:35169: $? = 0 | |
| configure:35209: result: no | |
| configure:35310: checking for _LARGEFILE_SOURCE value needed for large files | |
| configure:35337: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:35337: $? = 0 | |
| configure:35373: result: no | |
| configure:35439: checking whether KERN_USRSTACK sysctl is supported | |
| configure:35466: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:275:26: error: 'KERN_USRSTACK' undeclared (first use in this function) | |
| int nm[2] = {CTL_KERN, KERN_USRSTACK}; | |
| ^ | |
| conftest.c:275:26: note: each undeclared identifier is reported only once for each function it appears in | |
| configure:35466: $? = 1 | |
| configure: program exited with status 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | #define HAVE_MBSTATE_T 1 | |
| | #define HAVE_X11 1 | |
| | #define HAVE_KEYSYM 1 | |
| | #define HAVE_X11_Xmu 1 | |
| | #define HAVE_PANGOCAIRO 1 | |
| | #define HAVE_WORKING_CAIRO 1 | |
| | #define HAVE_CAIRO_PDF 1 | |
| | #define HAVE_CAIRO_PS 1 | |
| | #define HAVE_CAIRO_SVG 1 | |
| | #define HAVE_TCLTK 1 | |
| | #define HAVE_BSD_NETWORKING 1 | |
| | #define HAVE_SOCKETS 1 | |
| | #define HAVE_INTERNET 1 | |
| | #define SUPPORT_LIBXML 1 | |
| | #define HAVE_JPEG 1 | |
| | #define HAVE_PNG 1 | |
| | #define HAVE_TIFFIO_H 1 | |
| | #define HAVE_TIFF 1 | |
| | #define HAVE_BZLIB_H 1 | |
| | #define HAVE_LZMA_H 1 | |
| | #define HAVE_LZMA 1 | |
| | #define HAVE_PCRE_H 1 | |
| | #define HAVE_CURL_CURL_H 1 | |
| | #define HAVE_POSIX_LEAPSECONDS 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | |
| | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | |
| | #define HAVE_SETITIMER 1 | |
| | #define R_PROFILING 1 | |
| | #define R_MEMORY_PROFILING 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define NVALGRIND 1 | |
| | #define VALGRIND_LEVEL 0 | |
| | /* end confdefs.h. */ | |
| | | |
| | #include "confdefs.h" | |
| | #include <unistd.h> | |
| | #include <stdlib.h> | |
| | #include <sys/types.h> | |
| | #include <sys/sysctl.h> | |
| | | |
| | int main () { | |
| | int nm[2] = {CTL_KERN, KERN_USRSTACK}; | |
| | void * base; | |
| | size_t len = sizeof(void *); | |
| | int r = sysctl(nm, 2, &base, &len, NULL, 0); | |
| | | |
| | exit((r==0)?0:1); | |
| | } | |
| | | |
| configure:35476: result: no | |
| configure:35489: checking for visible __lib_stack_end | |
| configure:35509: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:35509: $? = 0 | |
| configure:35509: ./conftest | |
| configure:35509: $? = 0 | |
| configure:35519: result: yes | |
| configure:35539: checking for lpr | |
| configure:35555: found /usr/bin/lpr | |
| configure:35566: result: lpr | |
| configure:35587: checking for paperconf | |
| configure:35618: result: false | |
| configure:35766: checking for Fortran compiler version | |
| configure:35775: /bio/linuxbrew/bin/gfortran --version >&5 | |
| GNU Fortran (Homebrew gcc 5.3.0) 5.3.0 | |
| Copyright (C) 2015 Free Software Foundation, Inc. | |
| GNU Fortran comes with NO WARRANTY, to the extent permitted by law. | |
| You may redistribute copies of GNU Fortran | |
| under the terms of the GNU General Public License. | |
| For more information about these matters, see the file named COPYING | |
| configure:35786: $? = 0 | |
| configure:35775: /bio/linuxbrew/bin/gfortran -v >&5 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| COLLECT_GCC=/bio/linuxbrew/bin/gfortran | |
| COLLECT_LTO_WRAPPER=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper | |
| Target: x86_64-unknown-linux-gnu | |
| Configured with: ../configure --prefix=/bio/linuxbrew/Cellar/gcc/5.3.0 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/bio/linuxbrew/opt/gmp --with-mpfr=/bio/linuxbrew/opt/mpfr --with-mpc=/bio/linuxbrew/opt/libmpc --with-isl=/bio/linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| configure:35786: $? = 0 | |
| configure:35775: /bio/linuxbrew/bin/gfortran -V >&5 | |
| gfortran: error: unrecognized command line option '-V' | |
| gfortran: fatal error: no input files | |
| compilation terminated. | |
| configure:35786: $? = 1 | |
| configure:35775: /bio/linuxbrew/bin/gfortran -qversion >&5 | |
| gfortran: error: unrecognized command line option '-qversion' | |
| gfortran: fatal error: no input files | |
| compilation terminated. | |
| configure:35786: $? = 1 | |
| configure:35795: checking whether we are using the GNU Fortran compiler | |
| configure:35808: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 conftest.F >&5 | |
| configure:35808: $? = 0 | |
| configure:35817: result: yes | |
| configure:35823: checking whether /bio/linuxbrew/bin/gfortran accepts -g | |
| configure:35834: /bio/linuxbrew/bin/gfortran -c -g conftest.f >&5 | |
| configure:35834: $? = 0 | |
| configure:35842: result: yes | |
| configure:35978: checking for Fortran compiler version | |
| configure:35987: /bio/linuxbrew/bin/gfortran --version >&5 | |
| GNU Fortran (Homebrew gcc 5.3.0) 5.3.0 | |
| Copyright (C) 2015 Free Software Foundation, Inc. | |
| GNU Fortran comes with NO WARRANTY, to the extent permitted by law. | |
| You may redistribute copies of GNU Fortran | |
| under the terms of the GNU General Public License. | |
| For more information about these matters, see the file named COPYING | |
| configure:35998: $? = 0 | |
| configure:35987: /bio/linuxbrew/bin/gfortran -v >&5 | |
| Reading specs from /bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs | |
| COLLECT_GCC=/bio/linuxbrew/bin/gfortran | |
| COLLECT_LTO_WRAPPER=/bio/linuxbrew/Cellar/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper | |
| Target: x86_64-unknown-linux-gnu | |
| Configured with: ../configure --prefix=/bio/linuxbrew/Cellar/gcc/5.3.0 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/bio/linuxbrew/opt/gmp --with-mpfr=/bio/linuxbrew/opt/mpfr --with-mpc=/bio/linuxbrew/opt/libmpc --with-isl=/bio/linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib | |
| Thread model: posix | |
| gcc version 5.3.0 (Homebrew gcc 5.3.0) | |
| configure:35998: $? = 0 | |
| configure:35987: /bio/linuxbrew/bin/gfortran -V >&5 | |
| gfortran: error: unrecognized command line option '-V' | |
| gfortran: fatal error: no input files | |
| compilation terminated. | |
| configure:35998: $? = 1 | |
| configure:35987: /bio/linuxbrew/bin/gfortran -qversion >&5 | |
| gfortran: error: unrecognized command line option '-qversion' | |
| gfortran: fatal error: no input files | |
| compilation terminated. | |
| configure:35998: $? = 1 | |
| configure:36007: checking whether we are using the GNU Fortran compiler | |
| configure:36029: result: yes | |
| configure:36035: checking whether /bio/linuxbrew/bin/gfortran accepts -g | |
| configure:36054: result: yes | |
| configure:36192: checking if libtool supports shared libraries | |
| configure:36194: result: yes | |
| configure:36197: checking whether to build shared libraries | |
| configure:36217: result: yes | |
| configure:36220: checking whether to build static libraries | |
| configure:36224: result: no | |
| configure:36250: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 conftest.f >&5 | |
| configure:36253: $? = 0 | |
| configure:36363: checking for /bio/linuxbrew/bin/gfortran option to produce PIC | |
| configure:36635: result: -fPIC | |
| configure:36644: checking if /bio/linuxbrew/bin/gfortran PIC flag -fPIC works | |
| configure:36662: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 -fPIC conftest.f >&5 | |
| configure:36666: $? = 0 | |
| configure:36679: result: yes | |
| configure:36700: checking if /bio/linuxbrew/bin/gfortran static flag -static works | |
| configure:36728: result: no | |
| configure:36740: checking if /bio/linuxbrew/bin/gfortran supports -c -o file.o | |
| configure:36761: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 -o out/conftest2.o conftest.f >&5 | |
| configure:36765: $? = 0 | |
| configure:36787: result: yes | |
| configure:36792: checking if /bio/linuxbrew/bin/gfortran supports -c -o file.o | |
| configure:36839: result: yes | |
| configure:36869: checking whether the /bio/linuxbrew/bin/gfortran linker (/bio/linuxbrew/bin/ld) supports shared libraries | |
| configure:37838: result: yes | |
| configure:37975: checking dynamic linker characteristics | |
| configure:38346: /bio/linuxbrew/bin/gfortran -o conftest -Os -w -pipe -march=core2 -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -Wl,-rpath -Wl,/foo conftest.f -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:38346: $? = 0 | |
| configure:38564: result: GNU/Linux ld.so | |
| configure:38615: checking how to hardcode library paths into programs | |
| configure:38640: result: immediate | |
| configure:38681: checking for Fortran flag to compile .f90 files | |
| configure:38701: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 conftest.f90 >&5 | |
| configure:38701: $? = 0 | |
| configure:38710: result: none | |
| configure:38735: checking for Fortran flag to compile .f95 files | |
| configure:38755: /bio/linuxbrew/bin/gfortran -c -Os -w -pipe -march=core2 conftest.f95 >&5 | |
| configure:38755: $? = 0 | |
| configure:38764: result: none | |
| configure:38793: checking for /bio/linuxbrew/bin/gfortran option to support OpenMP | |
| configure:38808: /bio/linuxbrew/bin/gfortran -o conftest -Os -w -pipe -march=core2 -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.f95 -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| conftest.f95:5:9: | |
| tid = 42 | |
| 1 | |
| Error: Symbol 'tid' at (1) has no IMPLICIT type | |
| configure:38808: $? = 1 | |
| configure: failed program was: | |
| | | |
| | program main | |
| | implicit none | |
| | !$ integer tid | |
| | tid = 42 | |
| | call omp_set_num_threads(2) | |
| | end | |
| | | |
| configure:38828: /bio/linuxbrew/bin/gfortran -o conftest -Os -w -pipe -march=core2 -fopenmp -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.f95 -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:38828: $? = 0 | |
| configure:38842: result: -fopenmp | |
| configure:39070: checking for recommended packages | |
| configure:39086: result: yes | |
| configure:39106: checking whether NLS is requested | |
| configure:39115: result: yes | |
| configure:39123: checking for a thread-safe mkdir -p | |
| configure:39162: result: /usr/bin/mkdir -p | |
| configure:39173: checking whether we are using the GNU C Library 2 or newer | |
| configure:39200: result: yes | |
| configure:39249: checking for ranlib | |
| configure:39276: result: ranlib | |
| configure:39303: checking for simple visibility declarations | |
| configure:39333: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -fvisibility=hidden conftest.c >&5 | |
| configure:39333: $? = 0 | |
| configure:39342: result: yes | |
| configure:39358: checking for stdint.h | |
| configure:39383: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:39383: $? = 0 | |
| configure:39390: result: yes | |
| configure:39409: checking for getpagesize | |
| configure:39409: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:39409: $? = 0 | |
| configure:39409: result: yes | |
| configure:39418: checking for working mmap | |
| configure:39565: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:39565: $? = 0 | |
| configure:39565: ./conftest | |
| configure:39565: $? = 0 | |
| configure:39575: result: yes | |
| configure:39586: checking whether integer division by zero raises SIGFPE | |
| configure:39643: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:39643: $? = 0 | |
| configure:39643: ./conftest | |
| configure:39643: $? = 0 | |
| configure:39654: result: yes | |
| configure:39667: checking for inttypes.h | |
| configure:39692: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:39692: $? = 0 | |
| configure:39699: result: yes | |
| configure:39710: checking for unsigned long long int | |
| configure:39739: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:39739: $? = 0 | |
| configure:39747: result: yes | |
| configure:39786: checking for inttypes.h | |
| configure:39786: result: yes | |
| configure:39797: checking whether the inttypes.h PRIxNN macros are broken | |
| configure:39826: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:39826: $? = 0 | |
| configure:39834: result: no | |
| configure:39927: checking for ld used by /bio/linuxbrew/bin/gcc-5 | |
| configure:39994: result: /bio/linuxbrew/bin/ld | |
| configure:40001: checking if the linker (/bio/linuxbrew/bin/ld) is GNU ld | |
| configure:40016: result: yes | |
| configure:40023: checking for shared library run path origin | |
| configure:40036: result: done | |
| configure:40126: checking whether imported symbols can be declared weak | |
| configure:40149: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:40149: $? = 0 | |
| configure:40154: result: yes | |
| configure:41059: checking for multithread API to use | |
| configure:41061: result: none | |
| configure:41097: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41097: $? = 0 | |
| configure:41108: checking argz.h usability | |
| configure:41108: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:41108: $? = 0 | |
| configure:41108: result: yes | |
| configure:41108: checking argz.h presence | |
| configure:41108: /bio/linuxbrew/bin/gcc-5 -E conftest.c | |
| configure:41108: $? = 0 | |
| configure:41108: result: yes | |
| configure:41108: checking for argz.h | |
| configure:41108: result: yes | |
| configure:41108: checking for inttypes.h | |
| configure:41108: result: yes | |
| configure:41108: checking for limits.h | |
| configure:41108: result: yes | |
| configure:41108: checking for unistd.h | |
| configure:41108: result: yes | |
| configure:41108: checking for sys/param.h | |
| configure:41108: result: yes | |
| configure:41123: checking for getcwd | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for getegid | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for geteuid | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for getgid | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for getuid | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for mempcpy | |
| configure:41123: result: yes | |
| configure:41123: checking for munmap | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for stpcpy | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for strcasecmp | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for strdup | |
| configure:41123: result: yes | |
| configure:41123: checking for strtoul | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for tsearch | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for argz_count | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for argz_stringify | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for argz_next | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41123: checking for __fsetlocking | |
| configure:41123: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41123: $? = 0 | |
| configure:41123: result: yes | |
| configure:41134: checking whether feof_unlocked is declared | |
| configure:41162: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:41162: $? = 0 | |
| configure:41169: result: yes | |
| configure:41183: checking whether fgets_unlocked is declared | |
| configure:41211: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:41211: $? = 0 | |
| configure:41218: result: yes | |
| configure:41261: checking for iconv | |
| configure:41331: result: yes | |
| configure:41352: checking for iconv declaration | |
| configure:41400: result: | |
| extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); | |
| configure:41411: checking for NL_LOCALE_NAME macro | |
| configure:41436: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41436: $? = 0 | |
| configure:41445: result: yes | |
| configure:41457: checking for bison | |
| configure:41473: found /bio/linuxbrew/bin/bison | |
| configure:41484: result: bison | |
| configure:41498: checking version of bison | |
| configure:41507: result: 3.0.4, ok | |
| configure:41515: checking for long long int | |
| configure:41546: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41546: $? = 0 | |
| configure:41554: result: yes | |
| configure:41563: checking for long double | |
| configure:41603: result: yes | |
| configure:41607: checking for wchar_t | |
| configure:41632: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:41632: $? = 0 | |
| configure:41639: result: yes | |
| configure:41648: checking for wint_t | |
| configure:41673: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:41673: $? = 0 | |
| configure:41680: result: yes | |
| configure:41691: checking for intmax_t | |
| configure:41725: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:41725: $? = 0 | |
| configure:41732: result: yes | |
| configure:41742: checking whether printf() supports POSIX/XSI format strings | |
| configure:41783: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:41783: $? = 0 | |
| configure:41783: ./conftest | |
| configure:41783: $? = 0 | |
| configure:41794: result: yes | |
| configure:41805: checking whether we are using the GNU C Library 2.1 or newer | |
| configure:41832: result: yes | |
| configure:41841: checking for stdint.h | |
| configure:41841: result: yes | |
| configure:41851: checking for SIZE_MAX | |
| configure:41933: result: yes | |
| configure:41948: checking for stdint.h | |
| configure:41948: result: yes | |
| configure:41960: checking for CFPreferencesCopyAppValue | |
| configure:41986: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -Wl,-framework -Wl,CoreFoundation >&5 | |
| conftest.c:314:42: fatal error: CoreFoundation/CFPreferences.h: No such file or directory | |
| compilation terminated. | |
| configure:41986: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | #define HAVE_MBSTATE_T 1 | |
| | #define HAVE_X11 1 | |
| | #define HAVE_KEYSYM 1 | |
| | #define HAVE_X11_Xmu 1 | |
| | #define HAVE_PANGOCAIRO 1 | |
| | #define HAVE_WORKING_CAIRO 1 | |
| | #define HAVE_CAIRO_PDF 1 | |
| | #define HAVE_CAIRO_PS 1 | |
| | #define HAVE_CAIRO_SVG 1 | |
| | #define HAVE_TCLTK 1 | |
| | #define HAVE_BSD_NETWORKING 1 | |
| | #define HAVE_SOCKETS 1 | |
| | #define HAVE_INTERNET 1 | |
| | #define SUPPORT_LIBXML 1 | |
| | #define HAVE_JPEG 1 | |
| | #define HAVE_PNG 1 | |
| | #define HAVE_TIFFIO_H 1 | |
| | #define HAVE_TIFF 1 | |
| | #define HAVE_BZLIB_H 1 | |
| | #define HAVE_LZMA_H 1 | |
| | #define HAVE_LZMA 1 | |
| | #define HAVE_PCRE_H 1 | |
| | #define HAVE_CURL_CURL_H 1 | |
| | #define HAVE_POSIX_LEAPSECONDS 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | |
| | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | |
| | #define HAVE_SETITIMER 1 | |
| | #define R_PROFILING 1 | |
| | #define R_MEMORY_PROFILING 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define NVALGRIND 1 | |
| | #define VALGRIND_LEVEL 0 | |
| | #define HAVE_LIBC_STACK_END 1 | |
| | #define R_PRINTCMD "lpr" | |
| | #define SUPPORT_OPENMP 1 | |
| | #define HAVE_VISIBILITY 1 | |
| | #define HAVE_STDINT_H_WITH_UINTMAX 1 | |
| | #define HAVE_GETPAGESIZE 1 | |
| | #define HAVE_MMAP 1 | |
| | #define INTDIV0_RAISES_SIGFPE 1 | |
| | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | |
| | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | |
| | #define HAVE_UNSIGNED_LONG_LONG 1 | |
| | #define HAVE_UINTMAX_T 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_BUILTIN_EXPECT 1 | |
| | #define HAVE_ARGZ_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEGID 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETGID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_MUNMAP 1 | |
| | #define HAVE_STPCPY 1 | |
| | #define HAVE_STRCASECMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRTOUL 1 | |
| | #define HAVE_TSEARCH 1 | |
| | #define HAVE_ARGZ_COUNT 1 | |
| | #define HAVE_ARGZ_STRINGIFY 1 | |
| | #define HAVE_ARGZ_NEXT 1 | |
| | #define HAVE___FSETLOCKING 1 | |
| | #define HAVE_DECL_FEOF_UNLOCKED 1 | |
| | #define HAVE_DECL_FGETS_UNLOCKED 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_NL_LOCALE_NAME 1 | |
| | #define HAVE_LONG_LONG_INT 1 | |
| | #define HAVE_WCHAR_T 1 | |
| | #define HAVE_WINT_T 1 | |
| | #define HAVE_INTMAX_T 1 | |
| | #define HAVE_POSIX_PRINTF 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <CoreFoundation/CFPreferences.h> | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | CFPreferencesCopyAppValue(NULL, NULL) | |
| | ; | |
| | return 0; | |
| | } | |
| configure:41995: result: no | |
| configure:42002: checking for CFLocaleCopyCurrent | |
| configure:42028: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -Wl,-framework -Wl,CoreFoundation >&5 | |
| conftest.c:314:37: fatal error: CoreFoundation/CFLocale.h: No such file or directory | |
| compilation terminated. | |
| configure:42028: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | #define HAVE_MBSTATE_T 1 | |
| | #define HAVE_X11 1 | |
| | #define HAVE_KEYSYM 1 | |
| | #define HAVE_X11_Xmu 1 | |
| | #define HAVE_PANGOCAIRO 1 | |
| | #define HAVE_WORKING_CAIRO 1 | |
| | #define HAVE_CAIRO_PDF 1 | |
| | #define HAVE_CAIRO_PS 1 | |
| | #define HAVE_CAIRO_SVG 1 | |
| | #define HAVE_TCLTK 1 | |
| | #define HAVE_BSD_NETWORKING 1 | |
| | #define HAVE_SOCKETS 1 | |
| | #define HAVE_INTERNET 1 | |
| | #define SUPPORT_LIBXML 1 | |
| | #define HAVE_JPEG 1 | |
| | #define HAVE_PNG 1 | |
| | #define HAVE_TIFFIO_H 1 | |
| | #define HAVE_TIFF 1 | |
| | #define HAVE_BZLIB_H 1 | |
| | #define HAVE_LZMA_H 1 | |
| | #define HAVE_LZMA 1 | |
| | #define HAVE_PCRE_H 1 | |
| | #define HAVE_CURL_CURL_H 1 | |
| | #define HAVE_POSIX_LEAPSECONDS 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | |
| | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | |
| | #define HAVE_SETITIMER 1 | |
| | #define R_PROFILING 1 | |
| | #define R_MEMORY_PROFILING 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define NVALGRIND 1 | |
| | #define VALGRIND_LEVEL 0 | |
| | #define HAVE_LIBC_STACK_END 1 | |
| | #define R_PRINTCMD "lpr" | |
| | #define SUPPORT_OPENMP 1 | |
| | #define HAVE_VISIBILITY 1 | |
| | #define HAVE_STDINT_H_WITH_UINTMAX 1 | |
| | #define HAVE_GETPAGESIZE 1 | |
| | #define HAVE_MMAP 1 | |
| | #define INTDIV0_RAISES_SIGFPE 1 | |
| | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | |
| | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | |
| | #define HAVE_UNSIGNED_LONG_LONG 1 | |
| | #define HAVE_UINTMAX_T 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_BUILTIN_EXPECT 1 | |
| | #define HAVE_ARGZ_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEGID 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETGID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_MUNMAP 1 | |
| | #define HAVE_STPCPY 1 | |
| | #define HAVE_STRCASECMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRTOUL 1 | |
| | #define HAVE_TSEARCH 1 | |
| | #define HAVE_ARGZ_COUNT 1 | |
| | #define HAVE_ARGZ_STRINGIFY 1 | |
| | #define HAVE_ARGZ_NEXT 1 | |
| | #define HAVE___FSETLOCKING 1 | |
| | #define HAVE_DECL_FEOF_UNLOCKED 1 | |
| | #define HAVE_DECL_FGETS_UNLOCKED 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_NL_LOCALE_NAME 1 | |
| | #define HAVE_LONG_LONG_INT 1 | |
| | #define HAVE_WCHAR_T 1 | |
| | #define HAVE_WINT_T 1 | |
| | #define HAVE_INTMAX_T 1 | |
| | #define HAVE_POSIX_PRINTF 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <CoreFoundation/CFLocale.h> | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | CFLocaleCopyCurrent(); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:42037: result: no | |
| configure:42055: checking for ptrdiff_t | |
| configure:42055: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:42055: $? = 0 | |
| configure:42055: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:350:24: error: expected expression before ')' token | |
| if (sizeof ((ptrdiff_t))) | |
| ^ | |
| configure:42055: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | #define HAVE_MBSTATE_T 1 | |
| | #define HAVE_X11 1 | |
| | #define HAVE_KEYSYM 1 | |
| | #define HAVE_X11_Xmu 1 | |
| | #define HAVE_PANGOCAIRO 1 | |
| | #define HAVE_WORKING_CAIRO 1 | |
| | #define HAVE_CAIRO_PDF 1 | |
| | #define HAVE_CAIRO_PS 1 | |
| | #define HAVE_CAIRO_SVG 1 | |
| | #define HAVE_TCLTK 1 | |
| | #define HAVE_BSD_NETWORKING 1 | |
| | #define HAVE_SOCKETS 1 | |
| | #define HAVE_INTERNET 1 | |
| | #define SUPPORT_LIBXML 1 | |
| | #define HAVE_JPEG 1 | |
| | #define HAVE_PNG 1 | |
| | #define HAVE_TIFFIO_H 1 | |
| | #define HAVE_TIFF 1 | |
| | #define HAVE_BZLIB_H 1 | |
| | #define HAVE_LZMA_H 1 | |
| | #define HAVE_LZMA 1 | |
| | #define HAVE_PCRE_H 1 | |
| | #define HAVE_CURL_CURL_H 1 | |
| | #define HAVE_POSIX_LEAPSECONDS 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | |
| | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | |
| | #define HAVE_SETITIMER 1 | |
| | #define R_PROFILING 1 | |
| | #define R_MEMORY_PROFILING 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define NVALGRIND 1 | |
| | #define VALGRIND_LEVEL 0 | |
| | #define HAVE_LIBC_STACK_END 1 | |
| | #define R_PRINTCMD "lpr" | |
| | #define SUPPORT_OPENMP 1 | |
| | #define HAVE_VISIBILITY 1 | |
| | #define HAVE_STDINT_H_WITH_UINTMAX 1 | |
| | #define HAVE_GETPAGESIZE 1 | |
| | #define HAVE_MMAP 1 | |
| | #define INTDIV0_RAISES_SIGFPE 1 | |
| | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | |
| | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | |
| | #define HAVE_UNSIGNED_LONG_LONG 1 | |
| | #define HAVE_UINTMAX_T 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_BUILTIN_EXPECT 1 | |
| | #define HAVE_ARGZ_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEGID 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETGID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_MUNMAP 1 | |
| | #define HAVE_STPCPY 1 | |
| | #define HAVE_STRCASECMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRTOUL 1 | |
| | #define HAVE_TSEARCH 1 | |
| | #define HAVE_ARGZ_COUNT 1 | |
| | #define HAVE_ARGZ_STRINGIFY 1 | |
| | #define HAVE_ARGZ_NEXT 1 | |
| | #define HAVE___FSETLOCKING 1 | |
| | #define HAVE_DECL_FEOF_UNLOCKED 1 | |
| | #define HAVE_DECL_FGETS_UNLOCKED 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_NL_LOCALE_NAME 1 | |
| | #define HAVE_LONG_LONG_INT 1 | |
| | #define HAVE_WCHAR_T 1 | |
| | #define HAVE_WINT_T 1 | |
| | #define HAVE_INTMAX_T 1 | |
| | #define HAVE_POSIX_PRINTF 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((ptrdiff_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:42055: result: yes | |
| configure:42068: checking stddef.h usability | |
| configure:42068: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:42068: $? = 0 | |
| configure:42068: result: yes | |
| configure:42068: checking stddef.h presence | |
| configure:42068: /bio/linuxbrew/bin/gcc-5 -E conftest.c | |
| configure:42068: $? = 0 | |
| configure:42068: result: yes | |
| configure:42068: checking for stddef.h | |
| configure:42068: result: yes | |
| configure:42068: checking for stdlib.h | |
| configure:42068: result: yes | |
| configure:42068: checking for string.h | |
| configure:42068: result: yes | |
| configure:42081: checking for asprintf | |
| configure:42081: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:42081: $? = 0 | |
| configure:42081: result: yes | |
| configure:42081: checking for fwprintf | |
| configure:42081: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:42081: $? = 0 | |
| configure:42081: result: yes | |
| configure:42081: checking for putenv | |
| configure:42081: result: yes | |
| configure:42081: checking for setenv | |
| configure:42081: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:42081: $? = 0 | |
| configure:42081: result: yes | |
| configure:42081: checking for setlocale | |
| configure:42081: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:42081: $? = 0 | |
| configure:42081: result: yes | |
| configure:42081: checking for snprintf | |
| configure:42081: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:42081: $? = 0 | |
| configure:42081: result: yes | |
| configure:42081: checking for wcslen | |
| configure:42081: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:42081: $? = 0 | |
| configure:42081: result: yes | |
| configure:42092: checking whether _snprintf is declared | |
| configure:42120: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:338:22: error: '_snprintf' undeclared (first use in this function) | |
| char *p = (char *) _snprintf; | |
| ^ | |
| conftest.c:338:22: note: each undeclared identifier is reported only once for each function it appears in | |
| configure:42120: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | #define HAVE_MBSTATE_T 1 | |
| | #define HAVE_X11 1 | |
| | #define HAVE_KEYSYM 1 | |
| | #define HAVE_X11_Xmu 1 | |
| | #define HAVE_PANGOCAIRO 1 | |
| | #define HAVE_WORKING_CAIRO 1 | |
| | #define HAVE_CAIRO_PDF 1 | |
| | #define HAVE_CAIRO_PS 1 | |
| | #define HAVE_CAIRO_SVG 1 | |
| | #define HAVE_TCLTK 1 | |
| | #define HAVE_BSD_NETWORKING 1 | |
| | #define HAVE_SOCKETS 1 | |
| | #define HAVE_INTERNET 1 | |
| | #define SUPPORT_LIBXML 1 | |
| | #define HAVE_JPEG 1 | |
| | #define HAVE_PNG 1 | |
| | #define HAVE_TIFFIO_H 1 | |
| | #define HAVE_TIFF 1 | |
| | #define HAVE_BZLIB_H 1 | |
| | #define HAVE_LZMA_H 1 | |
| | #define HAVE_LZMA 1 | |
| | #define HAVE_PCRE_H 1 | |
| | #define HAVE_CURL_CURL_H 1 | |
| | #define HAVE_POSIX_LEAPSECONDS 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | |
| | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | |
| | #define HAVE_SETITIMER 1 | |
| | #define R_PROFILING 1 | |
| | #define R_MEMORY_PROFILING 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define NVALGRIND 1 | |
| | #define VALGRIND_LEVEL 0 | |
| | #define HAVE_LIBC_STACK_END 1 | |
| | #define R_PRINTCMD "lpr" | |
| | #define SUPPORT_OPENMP 1 | |
| | #define HAVE_VISIBILITY 1 | |
| | #define HAVE_STDINT_H_WITH_UINTMAX 1 | |
| | #define HAVE_GETPAGESIZE 1 | |
| | #define HAVE_MMAP 1 | |
| | #define INTDIV0_RAISES_SIGFPE 1 | |
| | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | |
| | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | |
| | #define HAVE_UNSIGNED_LONG_LONG 1 | |
| | #define HAVE_UINTMAX_T 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_BUILTIN_EXPECT 1 | |
| | #define HAVE_ARGZ_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEGID 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETGID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_MUNMAP 1 | |
| | #define HAVE_STPCPY 1 | |
| | #define HAVE_STRCASECMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRTOUL 1 | |
| | #define HAVE_TSEARCH 1 | |
| | #define HAVE_ARGZ_COUNT 1 | |
| | #define HAVE_ARGZ_STRINGIFY 1 | |
| | #define HAVE_ARGZ_NEXT 1 | |
| | #define HAVE___FSETLOCKING 1 | |
| | #define HAVE_DECL_FEOF_UNLOCKED 1 | |
| | #define HAVE_DECL_FGETS_UNLOCKED 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_NL_LOCALE_NAME 1 | |
| | #define HAVE_LONG_LONG_INT 1 | |
| | #define HAVE_WCHAR_T 1 | |
| | #define HAVE_WINT_T 1 | |
| | #define HAVE_INTMAX_T 1 | |
| | #define HAVE_POSIX_PRINTF 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STDDEF_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_ASPRINTF 1 | |
| | #define HAVE_FWPRINTF 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_SETLOCALE 1 | |
| | #define HAVE_SNPRINTF 1 | |
| | #define HAVE_WCSLEN 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | | |
| | #ifndef _snprintf | |
| | char *p = (char *) _snprintf; | |
| | #endif | |
| | | |
| | ; | |
| | return 0; | |
| | } | |
| configure:42127: result: no | |
| configure:42141: checking whether _snwprintf is declared | |
| configure:42169: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| conftest.c: In function 'main': | |
| conftest.c:339:22: error: '_snwprintf' undeclared (first use in this function) | |
| char *p = (char *) _snwprintf; | |
| ^ | |
| conftest.c:339:22: note: each undeclared identifier is reported only once for each function it appears in | |
| configure:42169: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "R" | |
| | #define PACKAGE_TARNAME "R" | |
| | #define PACKAGE_VERSION "3.2.3" | |
| | #define PACKAGE_STRING "R 3.2.3" | |
| | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| | #define PACKAGE_URL "https://www.r-project.org" | |
| | #define PACKAGE "R" | |
| | #define VERSION "3.2.3" | |
| | #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| | #define R_CPU "x86_64" | |
| | #define R_VENDOR "pc" | |
| | #define R_OS "linux-gnu" | |
| | #define Unix 1 | |
| | #define R_ARCH "" | |
| | #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define __EXTENSIONS__ 1 | |
| | #define _ALL_SOURCE 1 | |
| | #define _GNU_SOURCE 1 | |
| | #define _POSIX_PTHREAD_SEMANTICS 1 | |
| | #define _TANDEM_SOURCE 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define LT_OBJDIR ".libs/" | |
| | #define HAVE_LIBM 1 | |
| | #define HAVE_LIBDL 1 | |
| | #define HAVE_READLINE_HISTORY_H 1 | |
| | #define HAVE_READLINE_READLINE_H 1 | |
| | #define HAVE_LIBNCURSES 1 | |
| | #define HAVE_LIBREADLINE 1 | |
| | #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| | #define HAVE_RL_COMPLETION_MATCHES 1 | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_DIRENT_H 1 | |
| | #define HAVE_SYS_WAIT_H 1 | |
| | #define HAVE_ARPA_INET_H 1 | |
| | #define HAVE_DLFCN_H 1 | |
| | #define HAVE_ELF_H 1 | |
| | #define HAVE_FEATURES_H 1 | |
| | #define HAVE_FCNTL_H 1 | |
| | #define HAVE_FPU_CONTROL_H 1 | |
| | #define HAVE_GLOB_H 1 | |
| | #define HAVE_GRP_H 1 | |
| | #define HAVE_LANGINFO_H 1 | |
| | #define HAVE_NETDB_H 1 | |
| | #define HAVE_NETINET_IN_H 1 | |
| | #define HAVE_PWD_H 1 | |
| | #define HAVE_SCHED_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_SYS_RESOURCE_H 1 | |
| | #define HAVE_SYS_SELECT_H 1 | |
| | #define HAVE_SYS_SOCKET_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_SYS_TIMES_H 1 | |
| | #define HAVE_SYS_UTSNAME_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_UTIME_H 1 | |
| | #define HAVE_STDALIGN_H 1 | |
| | #define HAVE_ERRNO_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_LOCALE_H 1 | |
| | #define HAVE_STDARG_H 1 | |
| | #define HAVE_STDBOOL_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_DECL_SIGSETJMP 1 | |
| | #define HAVE_DECL_SIGLONGJMP 1 | |
| | #define HAVE_POSIX_SETJMP 1 | |
| | #define HAVE_GLIBC2 1 | |
| | #define RETSIGTYPE void | |
| | #define HAVE_INT64_T 1 | |
| | #define HAVE_INT_FAST64_T 1 | |
| | #define HAVE_DECL_SIZE_MAX 1 | |
| | #define R_SOCKLEN_T socklen_t | |
| | #define HAVE_STACK_T 1 | |
| | #define HAVE_INTPTR_T 1 | |
| | #define HAVE_UINTPTR_T 1 | |
| | #define R_INLINE inline | |
| | #define SIZEOF_INT 4 | |
| | #define INT_32_BITS 1 | |
| | #define SIZEOF_LONG 8 | |
| | #define SIZEOF_LONG_LONG 8 | |
| | #define SIZEOF_DOUBLE 8 | |
| | #define SIZEOF_SIZE_T 8 | |
| | #define HAVE_LONG_DOUBLE 1 | |
| | #define SIZEOF_LONG_DOUBLE 16 | |
| | #define F77_FUNC(name,NAME) name ## _ | |
| | #define F77_FUNC_(name,NAME) name ## _ | |
| | #define HAVE_F77_UNDERSCORE 1 | |
| | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| | #define SHLIB_EXT ".so" | |
| | #define HAVE_CXX11 1 | |
| | #define HAVE_OPENMP 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_DECL_ALLOCA 1 | |
| | #define HAVE_EXPM1 1 | |
| | #define HAVE_HYPOT 1 | |
| | #define HAVE_LOG1P 1 | |
| | #define HAVE_LOG1PL 1 | |
| | #define HAVE_LOG2 1 | |
| | #define HAVE_LOG10 1 | |
| | #define HAVE_NEARBYINT 1 | |
| | #define HAVE_NEARBYINTL 1 | |
| | #define HAVE_POWL 1 | |
| | #define HAVE_RINT 1 | |
| | #define HAVE_RINTL 1 | |
| | #define HAVE_VA_COPY 1 | |
| | #define HAVE_ISBLANK 1 | |
| | #define HAVE_EXP10 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define HAVE_FTELLO 1 | |
| | #define HAVE_MATHERR 1 | |
| | #define HAVE_FCNTL 1 | |
| | #define HAVE_GETGRGID 1 | |
| | #define HAVE_GETPWUID 1 | |
| | #define HAVE_KILL 1 | |
| | #define HAVE_SIGACTION 1 | |
| | #define HAVE_SIGALTSTACK 1 | |
| | #define HAVE_SIGEMPTYSET 1 | |
| | #define HAVE_FDOPEN 1 | |
| | #define HAVE_POPEN 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_UNSETENV 1 | |
| | #define HAVE_GETRLIMIT 1 | |
| | #define HAVE_GETRUSAGE 1 | |
| | #define HAVE_GETPRIORITY 1 | |
| | #define HAVE_CHMOD 1 | |
| | #define HAVE_MKFIFO 1 | |
| | #define HAVE_STAT 1 | |
| | #define HAVE_UMASK 1 | |
| | #define HAVE_GETTIMEOFDAY 1 | |
| | #define HAVE_UTIMES 1 | |
| | #define HAVE_TIMES 1 | |
| | #define HAVE_GMTIME_R 1 | |
| | #define HAVE_LOCALTIME_R 1 | |
| | #define HAVE_NL_LANGINFO 1 | |
| | #define HAVE_ACCESS 1 | |
| | #define HAVE_CHDIR 1 | |
| | #define HAVE_EXECV 1 | |
| | #define HAVE_FTRUNCATE 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_LINK 1 | |
| | #define HAVE_READLINK 1 | |
| | #define HAVE_SYMLINK 1 | |
| | #define HAVE_SYSCONF 1 | |
| | #define HAVE_SCHED_SETAFFINITY 1 | |
| | #define HAVE_SCHED_GETAFFINITY 1 | |
| | #define HAVE_UTIME 1 | |
| | #define HAVE_LIBRT 1 | |
| | #define HAVE_CLOCK_GETTIME 1 | |
| | #define HAVE_TIMESPEC_GET 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_DECL_PUTENV 1 | |
| | #define HAVE_VASPRINTF 1 | |
| | #define HAVE_DECL_VASPRINTF 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_REALPATH 1 | |
| | #define HAVE_DECL_REALPATH 1 | |
| | #define HAVE_GLOB 1 | |
| | #define HAVE_OFF_T 1 | |
| | #define HAVE_ISNAN 1 | |
| | #define HAVE_DECL_ISFINITE 1 | |
| | #define HAVE_DECL_ISNAN 1 | |
| | #define IEEE_754 1 | |
| | #define HAVE_PUTENV_UNSET 1 | |
| | #define HAVE_LANGINFO_CODESET 1 | |
| | #define HAVE_MKDTEMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRNCASECMP 1 | |
| | #define HAVE_DECL_MKDTEMP 1 | |
| | #define HAVE_DECL_STRDUP 1 | |
| | #define HAVE_DECL_STRNCASECMP 1 | |
| | #define HAVE_WORKING_CALLOC 1 | |
| | #define HAVE_WORKING_ISFINITE 1 | |
| | #define HAVE_WORKING_LOG1P 1 | |
| | #define HAVE_WORKING_FTELL 1 | |
| | #define HAVE_WORKING_SIGACTION 1 | |
| | #define HAVE_WORKING_64BIT_MKTIME 1 | |
| | #define HAVE_CABS 1 | |
| | #define HAVE_CARG 1 | |
| | #define HAVE_CEXP 1 | |
| | #define HAVE_CLOG 1 | |
| | #define HAVE_CSQRT 1 | |
| | #define HAVE_CPOW 1 | |
| | #define HAVE_CCOS 1 | |
| | #define HAVE_CSIN 1 | |
| | #define HAVE_CTAN 1 | |
| | #define HAVE_CACOS 1 | |
| | #define HAVE_CASIN 1 | |
| | #define HAVE_CATAN 1 | |
| | #define HAVE_CCOSH 1 | |
| | #define HAVE_CSINH 1 | |
| | #define HAVE_CTANH 1 | |
| | #define HAVE_TM_ZONE 1 | |
| | #define HAVE_TM_GMTOFF 1 | |
| | #define HAVE_ICONV_H 1 | |
| | #define HAVE_ICONV 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_WCHAR_H 1 | |
| | #define HAVE_WCTYPE_H 1 | |
| | #define HAVE_MBRTOWC 1 | |
| | #define HAVE_WCRTOMB 1 | |
| | #define HAVE_WCSCOLL 1 | |
| | #define HAVE_WCSFTIME 1 | |
| | #define HAVE_WCSTOD 1 | |
| | #define HAVE_MBSTOWCS 1 | |
| | #define HAVE_WCSTOMBS 1 | |
| | #define HAVE_WCTRANS 1 | |
| | #define HAVE_ISWBLANK 1 | |
| | #define HAVE_WCTYPE 1 | |
| | #define HAVE_ISWCTYPE 1 | |
| | #define HAVE_WCTRANS_T 1 | |
| | #define HAVE_MBSTATE_T 1 | |
| | #define HAVE_X11 1 | |
| | #define HAVE_KEYSYM 1 | |
| | #define HAVE_X11_Xmu 1 | |
| | #define HAVE_PANGOCAIRO 1 | |
| | #define HAVE_WORKING_CAIRO 1 | |
| | #define HAVE_CAIRO_PDF 1 | |
| | #define HAVE_CAIRO_PS 1 | |
| | #define HAVE_CAIRO_SVG 1 | |
| | #define HAVE_TCLTK 1 | |
| | #define HAVE_BSD_NETWORKING 1 | |
| | #define HAVE_SOCKETS 1 | |
| | #define HAVE_INTERNET 1 | |
| | #define SUPPORT_LIBXML 1 | |
| | #define HAVE_JPEG 1 | |
| | #define HAVE_PNG 1 | |
| | #define HAVE_TIFFIO_H 1 | |
| | #define HAVE_TIFF 1 | |
| | #define HAVE_BZLIB_H 1 | |
| | #define HAVE_LZMA_H 1 | |
| | #define HAVE_LZMA 1 | |
| | #define HAVE_PCRE_H 1 | |
| | #define HAVE_CURL_CURL_H 1 | |
| | #define HAVE_POSIX_LEAPSECONDS 1 | |
| | #define HAVE_SYS_TIME_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | |
| | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | |
| | #define HAVE_SETITIMER 1 | |
| | #define R_PROFILING 1 | |
| | #define R_MEMORY_PROFILING 1 | |
| | #define HAVE_FSEEKO 1 | |
| | #define NVALGRIND 1 | |
| | #define VALGRIND_LEVEL 0 | |
| | #define HAVE_LIBC_STACK_END 1 | |
| | #define R_PRINTCMD "lpr" | |
| | #define SUPPORT_OPENMP 1 | |
| | #define HAVE_VISIBILITY 1 | |
| | #define HAVE_STDINT_H_WITH_UINTMAX 1 | |
| | #define HAVE_GETPAGESIZE 1 | |
| | #define HAVE_MMAP 1 | |
| | #define INTDIV0_RAISES_SIGFPE 1 | |
| | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | |
| | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | |
| | #define HAVE_UNSIGNED_LONG_LONG 1 | |
| | #define HAVE_UINTMAX_T 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_BUILTIN_EXPECT 1 | |
| | #define HAVE_ARGZ_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_SYS_PARAM_H 1 | |
| | #define HAVE_GETCWD 1 | |
| | #define HAVE_GETEGID 1 | |
| | #define HAVE_GETEUID 1 | |
| | #define HAVE_GETGID 1 | |
| | #define HAVE_GETUID 1 | |
| | #define HAVE_MEMPCPY 1 | |
| | #define HAVE_MUNMAP 1 | |
| | #define HAVE_STPCPY 1 | |
| | #define HAVE_STRCASECMP 1 | |
| | #define HAVE_STRDUP 1 | |
| | #define HAVE_STRTOUL 1 | |
| | #define HAVE_TSEARCH 1 | |
| | #define HAVE_ARGZ_COUNT 1 | |
| | #define HAVE_ARGZ_STRINGIFY 1 | |
| | #define HAVE_ARGZ_NEXT 1 | |
| | #define HAVE___FSETLOCKING 1 | |
| | #define HAVE_DECL_FEOF_UNLOCKED 1 | |
| | #define HAVE_DECL_FGETS_UNLOCKED 1 | |
| | #define HAVE_ICONV 1 | |
| | #define ICONV_CONST | |
| | #define HAVE_NL_LOCALE_NAME 1 | |
| | #define HAVE_LONG_LONG_INT 1 | |
| | #define HAVE_WCHAR_T 1 | |
| | #define HAVE_WINT_T 1 | |
| | #define HAVE_INTMAX_T 1 | |
| | #define HAVE_POSIX_PRINTF 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_STDDEF_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_ASPRINTF 1 | |
| | #define HAVE_FWPRINTF 1 | |
| | #define HAVE_PUTENV 1 | |
| | #define HAVE_SETENV 1 | |
| | #define HAVE_SETLOCALE 1 | |
| | #define HAVE_SNPRINTF 1 | |
| | #define HAVE_WCSLEN 1 | |
| | #define HAVE_DECL__SNPRINTF 0 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef F77_DUMMY_MAIN | |
| | | |
| | # ifdef __cplusplus | |
| | extern "C" | |
| | # endif | |
| | int F77_DUMMY_MAIN() { return 1; } | |
| | | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | | |
| | #ifndef _snwprintf | |
| | char *p = (char *) _snwprintf; | |
| | #endif | |
| | | |
| | ; | |
| | return 0; | |
| | } | |
| configure:42176: result: no | |
| configure:42191: checking whether getc_unlocked is declared | |
| configure:42219: /bio/linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic conftest.c >&5 | |
| configure:42219: $? = 0 | |
| configure:42226: result: yes | |
| configure:42265: checking for nl_langinfo and CODESET | |
| configure:42298: result: yes | |
| configure:42307: checking for LC_MESSAGES | |
| configure:42331: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:42331: $? = 0 | |
| configure:42339: result: yes | |
| configure:42383: checking for CFPreferencesCopyAppValue | |
| configure:42418: result: no | |
| configure:42425: checking for CFLocaleCopyCurrent | |
| configure:42460: result: no | |
| configure:42495: checking whether included gettext is requested | |
| configure:42505: result: no | |
| configure:42528: checking for GNU gettext in libc | |
| configure:42556: /bio/linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=core2 -D__ACCELERATE__ -fpic -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib conftest.c -lpcre -llzma -lbz2 -lz -lrt -ldl -lm >&5 | |
| configure:42556: $? = 0 | |
| configure:42565: result: yes | |
| configure:43170: checking whether to use NLS | |
| configure:43172: result: yes | |
| configure:43175: checking where the gettext function comes from | |
| configure:43186: result: libc | |
| configure:43316: result: using as R_SHELL for scripts ... /bin/sh | |
| configure:43620: creating ./config.status | |
| ## ---------------------- ## | |
| ## Running config.status. ## | |
| ## ---------------------- ## | |
| This file was extended by R config.status 3.2.3, which was | |
| generated by GNU Autoconf 2.69. Invocation command line was | |
| CONFIG_FILES = | |
| CONFIG_HEADERS = | |
| CONFIG_LINKS = | |
| CONFIG_COMMANDS = | |
| $ ./config.status | |
| on 526080-s598783.unimelb.edu.au | |
| config.status:1938: creating Makeconf | |
| config.status:1938: creating Makefile | |
| config.status:1938: creating doc/Makefile | |
| config.status:1938: creating doc/html/Makefile | |
| config.status:1938: creating doc/manual/Makefile | |
| config.status:1938: creating etc/Makefile | |
| config.status:1938: creating etc/Makeconf | |
| config.status:1938: creating etc/Renviron | |
| config.status:1938: creating etc/javaconf | |
| config.status:1938: creating etc/ldpaths | |
| config.status:1938: creating m4/Makefile | |
| config.status:1938: creating po/Makefile | |
| config.status:1938: creating share/Makefile | |
| config.status:1938: creating src/Makefile | |
| config.status:1938: creating src/appl/Makefile | |
| config.status:1938: creating src/extra/Makefile | |
| config.status:1938: creating src/extra/blas/Makefile | |
| config.status:1938: creating src/extra/bzip2/Makefile | |
| config.status:1938: creating src/extra/intl/Makefile | |
| config.status:1938: creating src/extra/pcre/Makefile | |
| config.status:1938: creating src/extra/tre/Makefile | |
| config.status:1938: creating src/extra/tzone/Makefile | |
| config.status:1938: creating src/extra/xdr/Makefile | |
| config.status:1938: creating src/extra/xz/Makefile | |
| config.status:1938: creating src/extra/zlib/Makefile | |
| config.status:1938: creating src/include/Makefile | |
| config.status:1938: creating src/include/Rmath.h0 | |
| config.status:1938: creating src/include/R_ext/Makefile | |
| config.status:1938: creating src/library/Recommended/Makefile | |
| config.status:1938: creating src/library/Makefile | |
| config.status:1938: creating src/library/base/DESCRIPTION | |
| config.status:1938: creating src/library/base/Makefile | |
| config.status:1938: creating src/library/compiler/DESCRIPTION | |
| config.status:1938: creating src/library/compiler/Makefile | |
| config.status:1938: creating src/library/datasets/DESCRIPTION | |
| config.status:1938: creating src/library/datasets/Makefile | |
| config.status:1938: creating src/library/graphics/DESCRIPTION | |
| config.status:1938: creating src/library/graphics/Makefile | |
| config.status:1938: creating src/library/graphics/src/Makefile | |
| config.status:1938: creating src/library/grDevices/DESCRIPTION | |
| config.status:1938: creating src/library/grDevices/Makefile | |
| config.status:1938: creating src/library/grDevices/src/Makefile | |
| config.status:1938: creating src/library/grDevices/src/cairo/Makefile | |
| config.status:1938: creating src/library/grid/DESCRIPTION | |
| config.status:1938: creating src/library/grid/Makefile | |
| config.status:1938: creating src/library/grid/src/Makefile | |
| config.status:1938: creating src/library/methods/DESCRIPTION | |
| config.status:1938: creating src/library/methods/Makefile | |
| config.status:1938: creating src/library/methods/src/Makefile | |
| config.status:1938: creating src/library/parallel/DESCRIPTION | |
| config.status:1938: creating src/library/parallel/Makefile | |
| config.status:1938: creating src/library/parallel/src/Makefile | |
| config.status:1938: creating src/library/profile/Makefile | |
| config.status:1938: creating src/library/stats/DESCRIPTION | |
| config.status:1938: creating src/library/stats/Makefile | |
| config.status:1938: creating src/library/stats/src/Makefile | |
| config.status:1938: creating src/library/stats4/DESCRIPTION | |
| config.status:1938: creating src/library/stats4/Makefile | |
| config.status:1938: creating src/library/splines/DESCRIPTION | |
| config.status:1938: creating src/library/splines/Makefile | |
| config.status:1938: creating src/library/splines/src/Makefile | |
| config.status:1938: creating src/library/tcltk/DESCRIPTION | |
| config.status:1938: creating src/library/tcltk/Makefile | |
| config.status:1938: creating src/library/tcltk/src/Makefile | |
| config.status:1938: creating src/library/tools/DESCRIPTION | |
| config.status:1938: creating src/library/tools/Makefile | |
| config.status:1938: creating src/library/tools/src/Makefile | |
| config.status:1938: creating src/library/translations/DESCRIPTION | |
| config.status:1938: creating src/library/translations/Makefile | |
| config.status:1938: creating src/library/utils/DESCRIPTION | |
| config.status:1938: creating src/library/utils/Makefile | |
| config.status:1938: creating src/library/utils/src/Makefile | |
| config.status:1938: creating src/main/Makefile | |
| config.status:1938: creating src/modules/Makefile | |
| config.status:1938: creating src/modules/X11/Makefile | |
| config.status:1938: creating src/modules/internet/Makefile | |
| config.status:1938: creating src/modules/lapack/Makefile | |
| config.status:1938: creating src/nmath/Makefile | |
| config.status:1938: creating src/nmath/standalone/Makefile | |
| config.status:1938: creating src/scripts/Makefile | |
| config.status:1938: creating src/scripts/R.sh | |
| config.status:1938: creating src/scripts/Rcmd | |
| config.status:1938: creating src/scripts/f77_f2c | |
| config.status:1938: creating src/scripts/javareconf | |
| config.status:1938: creating src/scripts/mkinstalldirs | |
| config.status:1938: creating src/scripts/pager | |
| config.status:1938: creating src/scripts/rtags | |
| config.status:1938: creating src/unix/Makefile | |
| config.status:1938: creating tests/Makefile | |
| config.status:1938: creating tests/Embedding/Makefile | |
| config.status:1938: creating tests/Examples/Makefile | |
| config.status:1938: creating tools/Makefile | |
| config.status:1938: creating src/include/config.h | |
| config.status:2138: executing libtool commands | |
| config.status:2138: executing stamp-h commands | |
| configure:46925: result: | |
| R is now configured for x86_64-pc-linux-gnu | |
| Source directory: . | |
| Installation directory: /bio/linuxbrew/Cellar/r/3.2.3 | |
| C compiler: /bio/linuxbrew/bin/gcc-5 -Os -w -pipe -march=core2 -D__ACCELERATE__ | |
| Fortran 77 compiler: /bio/linuxbrew/bin/gfortran -Os -w -pipe -march=core2 | |
| C++ compiler: /bio/linuxbrew/bin/g++-5 -Os -w -pipe -march=core2 -D__ACCELERATE__ | |
| C++ 11 compiler: /bio/linuxbrew/bin/g++-5 -std=c++11 -Os -w -pipe -march=core2 -D__ACCELERATE__ | |
| Fortran 90/95 compiler: /bio/linuxbrew/bin/gfortran -Os -w -pipe -march=core2 | |
| Obj-C compiler: /bio/linuxbrew/bin/gcc-5 -Os -w -pipe -march=core2 -D__ACCELERATE__ -fobjc-exceptions | |
| Interfaces supported: X11, tcltk | |
| External libraries: readline, zlib, bzlib, lzma, PCRE, curl | |
| Additional capabilities: PNG, JPEG, TIFF, NLS, cairo | |
| Options enabled: shared R library, shared BLAS, R profiling, memory profiling | |
| Capabilities skipped: ICU | |
| Options not enabled: | |
| Recommended packages: yes | |
| configure:46995: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally | |
| ## ---------------- ## | |
| ## Cache variables. ## | |
| ## ---------------- ## | |
| ac_cv_build=x86_64-pc-linux-gnu | |
| ac_cv_c_bigendian=no | |
| ac_cv_c_compiler_gnu=yes | |
| ac_cv_c_const=yes | |
| ac_cv_c_inline=inline | |
| ac_cv_c_uint64_t=yes | |
| ac_cv_cxx_compiler_gnu=yes | |
| ac_cv_env_BLAS_LIBS_set= | |
| ac_cv_env_BLAS_LIBS_value= | |
| ac_cv_env_CCC_set= | |
| ac_cv_env_CCC_value= | |
| ac_cv_env_CC_set=set | |
| ac_cv_env_CC_value=/bio/linuxbrew/bin/gcc-5 | |
| ac_cv_env_CFLAGS_set=set | |
| ac_cv_env_CFLAGS_value='-Os -w -pipe -march=core2 -D__ACCELERATE__' | |
| ac_cv_env_CPICFLAGS_set= | |
| ac_cv_env_CPICFLAGS_value= | |
| ac_cv_env_CPPFLAGS_set=set | |
| ac_cv_env_CPPFLAGS_value='-isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include' | |
| ac_cv_env_CPP_set= | |
| ac_cv_env_CPP_value= | |
| ac_cv_env_CXX1XFLAGS_set= | |
| ac_cv_env_CXX1XFLAGS_value= | |
| ac_cv_env_CXX1XPICFLAGS_set= | |
| ac_cv_env_CXX1XPICFLAGS_value= | |
| ac_cv_env_CXX1XSTD_set= | |
| ac_cv_env_CXX1XSTD_value= | |
| ac_cv_env_CXX1X_set= | |
| ac_cv_env_CXX1X_value= | |
| ac_cv_env_CXXCPP_set= | |
| ac_cv_env_CXXCPP_value= | |
| ac_cv_env_CXXFLAGS_set=set | |
| ac_cv_env_CXXFLAGS_value='-Os -w -pipe -march=core2 -D__ACCELERATE__' | |
| ac_cv_env_CXXPICFLAGS_set= | |
| ac_cv_env_CXXPICFLAGS_value= | |
| ac_cv_env_CXX_set=set | |
| ac_cv_env_CXX_value=/bio/linuxbrew/bin/g++-5 | |
| ac_cv_env_DEFS_set= | |
| ac_cv_env_DEFS_value= | |
| ac_cv_env_DYLIB_LDFLAGS_set= | |
| ac_cv_env_DYLIB_LDFLAGS_value= | |
| ac_cv_env_DYLIB_LD_set= | |
| ac_cv_env_DYLIB_LD_value= | |
| ac_cv_env_F77_set=set | |
| ac_cv_env_F77_value=/bio/linuxbrew/bin/gfortran | |
| ac_cv_env_FCFLAGS_set=set | |
| ac_cv_env_FCFLAGS_value='-Os -w -pipe -march=core2' | |
| ac_cv_env_FCPICFLAGS_set= | |
| ac_cv_env_FCPICFLAGS_value= | |
| ac_cv_env_FC_set=set | |
| ac_cv_env_FC_value=/bio/linuxbrew/bin/gfortran | |
| ac_cv_env_FFLAGS_set=set | |
| ac_cv_env_FFLAGS_value='-Os -w -pipe -march=core2' | |
| ac_cv_env_FPICFLAGS_set= | |
| ac_cv_env_FPICFLAGS_value= | |
| ac_cv_env_JAVA_HOME_set= | |
| ac_cv_env_JAVA_HOME_value= | |
| ac_cv_env_LAPACK_LIBS_set= | |
| ac_cv_env_LAPACK_LIBS_value= | |
| ac_cv_env_LDFLAGS_set=set | |
| ac_cv_env_LDFLAGS_value=' -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib' | |
| ac_cv_env_LIBS_set= | |
| ac_cv_env_LIBS_value= | |
| ac_cv_env_LIBnn_set= | |
| ac_cv_env_LIBnn_value= | |
| ac_cv_env_MAIN_CFLAGS_set= | |
| ac_cv_env_MAIN_CFLAGS_value= | |
| ac_cv_env_MAIN_FFLAGS_set= | |
| ac_cv_env_MAIN_FFLAGS_value= | |
| ac_cv_env_MAIN_LDFLAGS_set= | |
| ac_cv_env_MAIN_LDFLAGS_value= | |
| ac_cv_env_MAIN_LD_set= | |
| ac_cv_env_MAIN_LD_value= | |
| ac_cv_env_MAKE_set= | |
| ac_cv_env_MAKE_value= | |
| ac_cv_env_OBJCFLAGS_set=set | |
| ac_cv_env_OBJCFLAGS_value='-Os -w -pipe -march=core2 -D__ACCELERATE__' | |
| ac_cv_env_OBJC_set=set | |
| ac_cv_env_OBJC_value=/bio/linuxbrew/bin/gcc-5 | |
| ac_cv_env_R_BATCHSAVE_set= | |
| ac_cv_env_R_BATCHSAVE_value= | |
| ac_cv_env_R_BROWSER_set= | |
| ac_cv_env_R_BROWSER_value= | |
| ac_cv_env_R_PAPERSIZE_set= | |
| ac_cv_env_R_PAPERSIZE_value= | |
| ac_cv_env_R_PDFVIEWER_set= | |
| ac_cv_env_R_PDFVIEWER_value= | |
| ac_cv_env_R_PRINTCMD_set= | |
| ac_cv_env_R_PRINTCMD_value= | |
| ac_cv_env_R_SHELL_set= | |
| ac_cv_env_R_SHELL_value= | |
| ac_cv_env_SAFE_FFLAGS_set= | |
| ac_cv_env_SAFE_FFLAGS_value= | |
| ac_cv_env_SHLIB_CFLAGS_set= | |
| ac_cv_env_SHLIB_CFLAGS_value= | |
| ac_cv_env_SHLIB_CXX1XLDFLAGS_set= | |
| ac_cv_env_SHLIB_CXX1XLDFLAGS_value= | |
| ac_cv_env_SHLIB_CXX1XLD_set= | |
| ac_cv_env_SHLIB_CXX1XLD_value= | |
| ac_cv_env_SHLIB_CXXLDFLAGS_set= | |
| ac_cv_env_SHLIB_CXXLDFLAGS_value= | |
| ac_cv_env_SHLIB_CXXLD_set= | |
| ac_cv_env_SHLIB_CXXLD_value= | |
| ac_cv_env_SHLIB_FCLDFLAGS_set= | |
| ac_cv_env_SHLIB_FCLDFLAGS_value= | |
| ac_cv_env_SHLIB_FCLD_set= | |
| ac_cv_env_SHLIB_FCLD_value= | |
| ac_cv_env_SHLIB_FFLAGS_set= | |
| ac_cv_env_SHLIB_FFLAGS_value= | |
| ac_cv_env_SHLIB_LDFLAGS_set= | |
| ac_cv_env_SHLIB_LDFLAGS_value= | |
| ac_cv_env_SHLIB_LD_set= | |
| ac_cv_env_SHLIB_LD_value= | |
| ac_cv_env_TAR_set= | |
| ac_cv_env_TAR_value= | |
| ac_cv_env_TCLTK_CPPFLAGS_set= | |
| ac_cv_env_TCLTK_CPPFLAGS_value= | |
| ac_cv_env_TCLTK_LIBS_set= | |
| ac_cv_env_TCLTK_LIBS_value= | |
| ac_cv_env_XMKMF_set= | |
| ac_cv_env_XMKMF_value= | |
| ac_cv_env_YACC_set= | |
| ac_cv_env_YACC_value= | |
| ac_cv_env_YFLAGS_set= | |
| ac_cv_env_YFLAGS_value= | |
| ac_cv_env_build_alias_set= | |
| ac_cv_env_build_alias_value= | |
| ac_cv_env_host_alias_set= | |
| ac_cv_env_host_alias_value= | |
| ac_cv_env_r_arch_set= | |
| ac_cv_env_r_arch_value= | |
| ac_cv_env_target_alias_set= | |
| ac_cv_env_target_alias_value= | |
| ac_cv_f77_compiler_gnu=yes | |
| ac_cv_f77_dummy_main=none | |
| ac_cv_f77_libs=' -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../.. -L/bio/linuxbrew/lib -lgfortran -lm -lquadmath' | |
| ac_cv_f77_mangling='lower case, underscore, no extra underscore' | |
| ac_cv_fc_compiler_gnu=yes | |
| ac_cv_fc_srcext_f90=none | |
| ac_cv_fc_srcext_f95=none | |
| ac_cv_fortran_dummy_main=none | |
| ac_cv_func___fsetlocking=yes | |
| ac_cv_func___setfpucw=no | |
| ac_cv_func_alloca_works=yes | |
| ac_cv_func_argz_count=yes | |
| ac_cv_func_argz_next=yes | |
| ac_cv_func_argz_stringify=yes | |
| ac_cv_func_asprintf=yes | |
| ac_cv_func_atan2pi=no | |
| ac_cv_func_atanpi=no | |
| ac_cv_func_connect=yes | |
| ac_cv_func_cospi=no | |
| ac_cv_func_dgemm_=no | |
| ac_cv_func_exp10=yes | |
| ac_cv_func_fseeko=yes | |
| ac_cv_func_ftello=yes | |
| ac_cv_func_fwprintf=yes | |
| ac_cv_func_getcwd=yes | |
| ac_cv_func_getegid=yes | |
| ac_cv_func_geteuid=yes | |
| ac_cv_func_getgid=yes | |
| ac_cv_func_gethostbyname=yes | |
| ac_cv_func_getpagesize=yes | |
| ac_cv_func_getuid=yes | |
| ac_cv_func_history_truncate_file=yes | |
| ac_cv_func_iconv=yes | |
| ac_cv_func_iconvlist=no | |
| ac_cv_func_isblank=yes | |
| ac_cv_func_isnan=yes | |
| ac_cv_func_matherr=yes | |
| ac_cv_func_mempcpy=yes | |
| ac_cv_func_mkdtemp=yes | |
| ac_cv_func_mmap_fixed_mapped=yes | |
| ac_cv_func_munmap=yes | |
| ac_cv_func_pown=no | |
| ac_cv_func_putenv=yes | |
| ac_cv_func_realpath=yes | |
| ac_cv_func_remove=yes | |
| ac_cv_func_setenv=yes | |
| ac_cv_func_setitimer=yes | |
| ac_cv_func_setlocale=yes | |
| ac_cv_func_shmat=yes | |
| ac_cv_func_sinpi=no | |
| ac_cv_func_snprintf=yes | |
| ac_cv_func_stpcpy=yes | |
| ac_cv_func_strcasecmp=yes | |
| ac_cv_func_strdup=yes | |
| ac_cv_func_strncasecmp=yes | |
| ac_cv_func_strtoul=yes | |
| ac_cv_func_tanpi=no | |
| ac_cv_func_tsearch=yes | |
| ac_cv_func_vasprintf=yes | |
| ac_cv_func_wcslen=yes | |
| ac_cv_gnu_library_2=yes | |
| ac_cv_gnu_library_2_1=yes | |
| ac_cv_have_decl__snprintf=no | |
| ac_cv_have_decl__snwprintf=no | |
| ac_cv_have_decl_access=yes | |
| ac_cv_have_decl_alloca=yes | |
| ac_cv_have_decl_cabs=yes | |
| ac_cv_have_decl_cacos=yes | |
| ac_cv_have_decl_carg=yes | |
| ac_cv_have_decl_casin=yes | |
| ac_cv_have_decl_catan=yes | |
| ac_cv_have_decl_ccos=yes | |
| ac_cv_have_decl_ccosh=yes | |
| ac_cv_have_decl_cexp=yes | |
| ac_cv_have_decl_chdir=yes | |
| ac_cv_have_decl_chmod=yes | |
| ac_cv_have_decl_clock_gettime=yes | |
| ac_cv_have_decl_clog=yes | |
| ac_cv_have_decl_cpow=yes | |
| ac_cv_have_decl_csin=yes | |
| ac_cv_have_decl_csinh=yes | |
| ac_cv_have_decl_csqrt=yes | |
| ac_cv_have_decl_ctan=yes | |
| ac_cv_have_decl_ctanh=yes | |
| ac_cv_have_decl_execv=yes | |
| ac_cv_have_decl_expm1=yes | |
| ac_cv_have_decl_fcntl=yes | |
| ac_cv_have_decl_fdopen=yes | |
| ac_cv_have_decl_feof_unlocked=yes | |
| ac_cv_have_decl_fgets_unlocked=yes | |
| ac_cv_have_decl_ftruncate=yes | |
| ac_cv_have_decl_getc_unlocked=yes | |
| ac_cv_have_decl_getcwd=yes | |
| ac_cv_have_decl_geteuid=yes | |
| ac_cv_have_decl_getgrgid=yes | |
| ac_cv_have_decl_getpriority=yes | |
| ac_cv_have_decl_getpwuid=yes | |
| ac_cv_have_decl_getrlimit=yes | |
| ac_cv_have_decl_getrusage=yes | |
| ac_cv_have_decl_gettimeofday=yes | |
| ac_cv_have_decl_getuid=yes | |
| ac_cv_have_decl_glob=yes | |
| ac_cv_have_decl_gmtime_r=yes | |
| ac_cv_have_decl_hypot=yes | |
| ac_cv_have_decl_isfinite=yes | |
| ac_cv_have_decl_isnan=yes | |
| ac_cv_have_decl_iswblank=yes | |
| ac_cv_have_decl_iswctype=yes | |
| ac_cv_have_decl_kill=yes | |
| ac_cv_have_decl_link=yes | |
| ac_cv_have_decl_localtime_r=yes | |
| ac_cv_have_decl_log10=yes | |
| ac_cv_have_decl_log1p=yes | |
| ac_cv_have_decl_log1pl=yes | |
| ac_cv_have_decl_log2=yes | |
| ac_cv_have_decl_mbrtowc=yes | |
| ac_cv_have_decl_mbstowcs=yes | |
| ac_cv_have_decl_mkdtemp=yes | |
| ac_cv_have_decl_mkfifo=yes | |
| ac_cv_have_decl_nearbyint=yes | |
| ac_cv_have_decl_nearbyintl=yes | |
| ac_cv_have_decl_nl_langinfo=yes | |
| ac_cv_have_decl_popen=yes | |
| ac_cv_have_decl_powl=yes | |
| ac_cv_have_decl_putenv=yes | |
| ac_cv_have_decl_readlink=yes | |
| ac_cv_have_decl_realpath=yes | |
| ac_cv_have_decl_rint=yes | |
| ac_cv_have_decl_rintl=yes | |
| ac_cv_have_decl_rl_completion_matches=yes | |
| ac_cv_have_decl_sched_getaffinity=yes | |
| ac_cv_have_decl_sched_setaffinity=yes | |
| ac_cv_have_decl_setenv=yes | |
| ac_cv_have_decl_sigaction=yes | |
| ac_cv_have_decl_sigaltstack=yes | |
| ac_cv_have_decl_sigemptyset=yes | |
| ac_cv_have_decl_siglongjmp=yes | |
| ac_cv_have_decl_sigsetjmp=yes | |
| ac_cv_have_decl_stat=yes | |
| ac_cv_have_decl_strdup=yes | |
| ac_cv_have_decl_strncasecmp=yes | |
| ac_cv_have_decl_symlink=yes | |
| ac_cv_have_decl_sysconf=yes | |
| ac_cv_have_decl_times=yes | |
| ac_cv_have_decl_timespec_get=yes | |
| ac_cv_have_decl_umask=yes | |
| ac_cv_have_decl_unsetenv=yes | |
| ac_cv_have_decl_utime=yes | |
| ac_cv_have_decl_utimes=yes | |
| ac_cv_have_decl_va_copy=yes | |
| ac_cv_have_decl_vasprintf=yes | |
| ac_cv_have_decl_wcrtomb=yes | |
| ac_cv_have_decl_wcscoll=yes | |
| ac_cv_have_decl_wcsftime=yes | |
| ac_cv_have_decl_wcstod=yes | |
| ac_cv_have_decl_wcstombs=yes | |
| ac_cv_have_decl_wctrans=yes | |
| ac_cv_have_decl_wctype=yes | |
| ac_cv_have_x='have_x=yes ac_x_includes='\'''\'' ac_x_libraries='\'''\''' | |
| ac_cv_header_X11_Intrinsic_h=yes | |
| ac_cv_header_X11_Xmu_Atoms_h=yes | |
| ac_cv_header_argz_h=yes | |
| ac_cv_header_arpa_inet_h=yes | |
| ac_cv_header_bzlib_h=yes | |
| ac_cv_header_complex_h=yes | |
| ac_cv_header_curl_curl_h=yes | |
| ac_cv_header_dirent_dirent_h=yes | |
| ac_cv_header_dl_h=no | |
| ac_cv_header_dlfcn_h=yes | |
| ac_cv_header_elf_h=yes | |
| ac_cv_header_errno_h=yes | |
| ac_cv_header_fcntl_h=yes | |
| ac_cv_header_features_h=yes | |
| ac_cv_header_floatingpoint_h=no | |
| ac_cv_header_fpu_control_h=yes | |
| ac_cv_header_glob_h=yes | |
| ac_cv_header_grp_h=yes | |
| ac_cv_header_iconv_h=yes | |
| ac_cv_header_inttypes_h=yes | |
| ac_cv_header_langinfo_h=yes | |
| ac_cv_header_limits_h=yes | |
| ac_cv_header_locale_h=yes | |
| ac_cv_header_lzma_h=yes | |
| ac_cv_header_memory_h=yes | |
| ac_cv_header_minix_config_h=no | |
| ac_cv_header_netdb_h=yes | |
| ac_cv_header_netinet_in_h=yes | |
| ac_cv_header_pcre_h=yes | |
| ac_cv_header_pcre_pcre_h=no | |
| ac_cv_header_pwd_h=yes | |
| ac_cv_header_readline_history_h=yes | |
| ac_cv_header_readline_readline_h=yes | |
| ac_cv_header_rpc_types_h=yes | |
| ac_cv_header_rpc_xdr_h=yes | |
| ac_cv_header_sched_h=yes | |
| ac_cv_header_stdalign_h=yes | |
| ac_cv_header_stdarg_h=yes | |
| ac_cv_header_stdbool_h=yes | |
| ac_cv_header_stdc=yes | |
| ac_cv_header_stddef_h=yes | |
| ac_cv_header_stdint_h=yes | |
| ac_cv_header_stdlib_h=yes | |
| ac_cv_header_string_h=yes | |
| ac_cv_header_strings_h=yes | |
| ac_cv_header_sunmath_h=no | |
| ac_cv_header_sys_param_h=yes | |
| ac_cv_header_sys_resource_h=yes | |
| ac_cv_header_sys_select_h=yes | |
| ac_cv_header_sys_socket_h=yes | |
| ac_cv_header_sys_stat_h=yes | |
| ac_cv_header_sys_time_h=yes | |
| ac_cv_header_sys_times_h=yes | |
| ac_cv_header_sys_types_h=yes | |
| ac_cv_header_sys_utsname_h=yes | |
| ac_cv_header_sys_wait_h=yes | |
| ac_cv_header_tcl_h=yes | |
| ac_cv_header_tiffio_h=yes | |
| ac_cv_header_tk_h=yes | |
| ac_cv_header_unistd_h=yes | |
| ac_cv_header_utime_h=yes | |
| ac_cv_header_wchar_h=yes | |
| ac_cv_header_wctype_h=yes | |
| ac_cv_header_zlib_h=yes | |
| ac_cv_host=x86_64-pc-linux-gnu | |
| ac_cv_lib_ICE_IceConnectionNumber=yes | |
| ac_cv_lib_Xmu_XmuInternAtom=yes | |
| ac_cv_lib_Xt_XtToolkitInitialize=yes | |
| ac_cv_lib_atlas_ATL_xerbla=no | |
| ac_cv_lib_blas_dgemm_=no | |
| ac_cv_lib_bz2_BZ2_bzlibVersion=yes | |
| ac_cv_lib_dl_dlopen=yes | |
| ac_cv_lib_jpeg_jpeg_destroy_compress=yes | |
| ac_cv_lib_lzma_lzma_version_number=yes | |
| ac_cv_lib_m_cos=yes | |
| ac_cv_lib_m_sin=yes | |
| ac_cv_lib_ncurses_main=yes | |
| ac_cv_lib_pcre_pcre_fullinfo=yes | |
| ac_cv_lib_png_png_create_write_struct=yes | |
| ac_cv_lib_readline_rl_callback_read_char=yes | |
| ac_cv_lib_rt_clock_gettime=yes | |
| ac_cv_lib_sunmath_cospi=no | |
| ac_cv_lib_tiff_TIFFOpen=yes | |
| ac_cv_lib_z_inflateInit2_=yes | |
| ac_cv_lib_z_main=yes | |
| ac_cv_member_struct_stat_st_atim_tv_nsec=yes | |
| ac_cv_objc_compiler_gnu=yes | |
| ac_cv_objext=o | |
| ac_cv_path_CURL_CONFIG=/bio/linuxbrew/bin/curl-config | |
| ac_cv_path_EGREP='/usr/bin/grep -E' | |
| ac_cv_path_FGREP='/usr/bin/grep -F' | |
| ac_cv_path_GETWD=/usr/bin/pwd | |
| ac_cv_path_GREP=/usr/bin/grep | |
| ac_cv_path_INSTALL_INFO=/bio/linuxbrew/bin/install-info | |
| ac_cv_path_KPSEWHICH=/usr/bin/kpsewhich | |
| ac_cv_path_MAKEINDEX=/usr/bin/makeindex | |
| ac_cv_path_MAKEINFO=/bio/linuxbrew/bin/texi2any | |
| ac_cv_path_NOTANGLE=false | |
| ac_cv_path_PAGER=/usr/bin/less | |
| ac_cv_path_PAPERCONF=false | |
| ac_cv_path_PDFLATEX=/usr/bin/pdflatex | |
| ac_cv_path_PDFTEX=/usr/bin/pdftex | |
| ac_cv_path_PKGCONF=/bio/linuxbrew/bin/pkg-config | |
| ac_cv_path_REALPATH=/usr/bin/realpath | |
| ac_cv_path_R_BROWSER=/usr/bin/firefox | |
| ac_cv_path_R_BZIPCMD=/bio/linuxbrew/bin/bzip2 | |
| ac_cv_path_R_GZIPCMD=/usr/bin/gzip | |
| ac_cv_path_R_PDFVIEWER=/usr/bin/xdg-open | |
| ac_cv_path_R_UNZIPCMD=/bio/linuxbrew/bin/unzip | |
| ac_cv_path_R_ZIPCMD=/usr/bin/zip | |
| ac_cv_path_SED=/bio/linuxbrew/bin/sed | |
| ac_cv_path_TAR=/usr/bin/gtar | |
| ac_cv_path_TEX=/usr/bin/tex | |
| ac_cv_path_TEXI2DVI=/bio/linuxbrew/bin/texi2dvi | |
| ac_cv_path_WHICH=/usr/bin/which | |
| ac_cv_path_install='/usr/bin/install -c' | |
| ac_cv_path_mkdir=/usr/bin/mkdir | |
| ac_cv_prog_AR=ar | |
| ac_cv_prog_AWK=gawk | |
| ac_cv_prog_CPP='/bio/linuxbrew/bin/gcc-5 -E' | |
| ac_cv_prog_CXXCPP='/bio/linuxbrew/bin/g++-5 -E' | |
| ac_cv_prog_INTLBISON=bison | |
| ac_cv_prog_R_PRINTCMD=lpr | |
| ac_cv_prog_YACC='bison -y' | |
| ac_cv_prog_ac_ct_CC=/bio/linuxbrew/bin/gcc-5 | |
| ac_cv_prog_ac_ct_OBJDUMP=objdump | |
| ac_cv_prog_ac_ct_RANLIB=ranlib | |
| ac_cv_prog_ac_ct_STRIP=strip | |
| ac_cv_prog_c_openmp=-fopenmp | |
| ac_cv_prog_cc_c89= | |
| ac_cv_prog_cc_c99= | |
| ac_cv_prog_cc_g=yes | |
| ac_cv_prog_cc_stdc= | |
| ac_cv_prog_cxx_g=yes | |
| ac_cv_prog_cxx_openmp=-fopenmp | |
| ac_cv_prog_f77_g=yes | |
| ac_cv_prog_f77_openmp=-fopenmp | |
| ac_cv_prog_f77_v=-v | |
| ac_cv_prog_fc_g=yes | |
| ac_cv_prog_fc_openmp=-fopenmp | |
| ac_cv_prog_gcc_traditional=no | |
| ac_cv_prog_objc_g=yes | |
| ac_cv_safe_to_define___extensions__=yes | |
| ac_cv_search_connect='none required' | |
| ac_cv_search_gethostbyname='none required' | |
| ac_cv_search_opendir='none required' | |
| ac_cv_search_xdr_string='none required' | |
| ac_cv_sizeof_double=8 | |
| ac_cv_sizeof_int=4 | |
| ac_cv_sizeof_long=8 | |
| ac_cv_sizeof_long_double=16 | |
| ac_cv_sizeof_long_long=8 | |
| ac_cv_sizeof_size_t=8 | |
| ac_cv_sys_file_offset_bits=no | |
| ac_cv_sys_largefile_CC=no | |
| ac_cv_sys_largefile_source=no | |
| ac_cv_type_KeySym=yes | |
| ac_cv_type_blkcnt_t=yes | |
| ac_cv_type_double_complex=yes | |
| ac_cv_type_int64_t=yes | |
| ac_cv_type_int_fast64_t=yes | |
| ac_cv_type_intptr_t=yes | |
| ac_cv_type_long_long_int=yes | |
| ac_cv_type_mbstate_t=yes | |
| ac_cv_type_off_t=yes | |
| ac_cv_type_pid_t=yes | |
| ac_cv_type_ptrdiff_t=yes | |
| ac_cv_type_signal=void | |
| ac_cv_type_size_t=yes | |
| ac_cv_type_stack_t=yes | |
| ac_cv_type_uintptr_t=yes | |
| ac_cv_type_unsigned_long_long=yes | |
| ac_cv_type_unsigned_long_long_int=yes | |
| ac_cv_type_wctrans_t=yes | |
| ac_cv_typeof_struct_stat_st_atim_is_struct_timespec=yes | |
| ac_cv_working_alloca_h=yes | |
| acl_cv_hardcode_direct=no | |
| acl_cv_hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' | |
| acl_cv_hardcode_libdir_separator= | |
| acl_cv_hardcode_minus_L=no | |
| acl_cv_libext=a | |
| acl_cv_libname_spec='lib$name' | |
| acl_cv_library_names_spec='$libname$shrext' | |
| acl_cv_path_LD=/bio/linuxbrew/bin/ld | |
| acl_cv_prog_gnu_ld=yes | |
| acl_cv_rpath=done | |
| acl_cv_shlibext=so | |
| acl_cv_wl=-Wl, | |
| am_cv_func_iconv=yes | |
| am_cv_langinfo_codeset=yes | |
| am_cv_lib_iconv=no | |
| am_cv_proto_iconv='extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);' | |
| am_cv_proto_iconv_arg1= | |
| ax_cv_cxx_compile_cxx11=no | |
| ax_cv_cxx_compile_cxx11__std_cpp11=yes | |
| gl_cv_cc_visibility=yes | |
| gl_cv_header_inttypes_h=yes | |
| gl_cv_header_stdint_h=yes | |
| gl_cv_size_max=yes | |
| gt_cv_c_intmax_t=yes | |
| gt_cv_c_long_double=yes | |
| gt_cv_c_wchar_t=yes | |
| gt_cv_c_wint_t=yes | |
| gt_cv_func_CFLocaleCopyCurrent=no | |
| gt_cv_func_CFPreferencesCopyAppValue=no | |
| gt_cv_func_gnugettext2_libc=yes | |
| gt_cv_func_printf_posix=yes | |
| gt_cv_int_divbyzero_sigfpe=yes | |
| gt_cv_inttypes_pri_broken=no | |
| gt_cv_nl_locale_name=yes | |
| gt_cv_val_LC_MESSAGES=yes | |
| lt_cv_deplibs_check_method=pass_all | |
| lt_cv_file_magic_cmd='$MAGIC_CMD' | |
| lt_cv_file_magic_test_file= | |
| lt_cv_ld_reload_flag=-r | |
| lt_cv_nm_interface='BSD nm' | |
| lt_cv_objdir=.libs | |
| lt_cv_path_LD=/bio/linuxbrew/bin/ld | |
| lt_cv_path_LDCXX=/bio/linuxbrew/bin/ld | |
| lt_cv_path_NM='/bio/linuxbrew/bin/nm -B' | |
| lt_cv_prog_compiler_c_o=yes | |
| lt_cv_prog_compiler_c_o_CXX=yes | |
| lt_cv_prog_compiler_c_o_F77=yes | |
| lt_cv_prog_compiler_c_o_FC=yes | |
| lt_cv_prog_compiler_pic_works=yes | |
| lt_cv_prog_compiler_pic_works_CXX=yes | |
| lt_cv_prog_compiler_pic_works_F77=yes | |
| lt_cv_prog_compiler_pic_works_FC=yes | |
| lt_cv_prog_compiler_rtti_exceptions=yes | |
| lt_cv_prog_compiler_static_works=no | |
| lt_cv_prog_compiler_static_works_CXX=no | |
| lt_cv_prog_compiler_static_works_F77=no | |
| lt_cv_prog_compiler_static_works_FC=no | |
| lt_cv_prog_gnu_ld=yes | |
| lt_cv_prog_gnu_ldcxx=yes | |
| lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' | |
| lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' | |
| lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' | |
| lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' | |
| lt_cv_sys_max_cmd_len=1572864 | |
| nls_cv_force_use_gnu_gettext=no | |
| nls_cv_header_intl= | |
| nls_cv_header_libgt= | |
| nls_cv_use_gnu_gettext=no | |
| r_cv_OBJCXX=/bio/linuxbrew/bin/g++-5 | |
| r_cv_bsd_networking=yes | |
| r_cv_c_inline=inline | |
| r_cv_c_libs=' -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/bio/linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0/../../.. -L/bio/linuxbrew/lib -lgcc_s' | |
| r_cv_c_no_math_inlines=no | |
| r_cv_cairo_works=yes | |
| r_cv_func_calloc_works=yes | |
| r_cv_func_isfinite_works=yes | |
| r_cv_func_log1p_works=yes | |
| r_cv_func_sigaction_works=yes | |
| r_cv_has_pangocairo=yes | |
| r_cv_have_bzlib=yes | |
| r_cv_have_curl728=yes | |
| r_cv_have_lzma=yes | |
| r_cv_have_pcre810=yes | |
| r_cv_have_tm_gmtoff=yes | |
| r_cv_have_tm_zone=yes | |
| r_cv_header_glibc2=yes | |
| r_cv_header_jpeglib_h=yes | |
| r_cv_header_png_h=yes | |
| r_cv_header_setjmp_posix=yes | |
| r_cv_header_zlib_h=yes | |
| r_cv_iconv_latin1=yes | |
| r_cv_icu=no | |
| r_cv_ieee_754=yes | |
| r_cv_kern_usrstack=no | |
| r_cv_libc_stack_end=yes | |
| r_cv_misc_recommended_packages=yes | |
| r_cv_mktime_errno=no | |
| r_cv_objc_runtime=-lobjc | |
| r_cv_objc_runtime_style=unknown | |
| r_cv_path_TCL_CONFIG=/usr/lib64/tclConfig.sh | |
| r_cv_path_TK_CONFIG=/usr/lib64/tkConfig.sh | |
| r_cv_prog_c_v=-v | |
| r_cv_prog_cc_c_o_lo=yes | |
| r_cv_prog_cc_m='$(CC) -MM' | |
| r_cv_prog_cc_vis=yes | |
| r_cv_prog_cxx_m=yes | |
| r_cv_prog_f77_append_second_underscore=no | |
| r_cv_prog_f77_append_underscore=yes | |
| r_cv_prog_f77_can_run=yes | |
| r_cv_prog_f77_cc_compat=yes | |
| r_cv_prog_f77_cc_compat_complex=yes | |
| r_cv_prog_f77_vis=yes | |
| r_cv_prog_objc_flag__fobjc_exceptions=yes | |
| r_cv_prog_objc_m='/bio/linuxbrew/bin/gcc-5 -MM' | |
| r_cv_prog_texi2any_v5=yes | |
| r_cv_putenv_unset2=no | |
| r_cv_putenv_unset=yes | |
| r_cv_size_max=yes | |
| r_cv_sys_posix_leapseconds=yes | |
| r_cv_tcltk_works=yes | |
| r_cv_type_keysym=yes | |
| r_cv_type_socklen=socklen_t | |
| r_cv_visibility_attribute=yes | |
| r_cv_working_ftell=yes | |
| r_cv_working_mktime=yes | |
| ## ----------------- ## | |
| ## Output variables. ## | |
| ## ----------------- ## | |
| ACLOCAL='aclocal' | |
| ALLOCA='' | |
| AR='ar' | |
| ARFLAGS='rc' | |
| AUTOCONF='autoconf' | |
| AUTOHEADER='autoheader' | |
| AUTOMAKE='automake' | |
| AWK='gawk' | |
| BITMAP_LIBS='-ltiff -ljpeg -lpng -lz' | |
| BLAS_LIBS0='' | |
| BLAS_LIBS='-L$(R_HOME)/lib$(R_ARCH) -lRblas' | |
| BLAS_SHLIB_FALSE='#' | |
| BLAS_SHLIB_TRUE='' | |
| BUILDDIR_IS_SRCDIR='yes' | |
| BUILD_AQUA_FALSE='' | |
| BUILD_AQUA_TRUE='#' | |
| BUILD_BZLIB_FALSE='' | |
| BUILD_BZLIB_TRUE='#' | |
| BUILD_CC='' | |
| BUILD_CYGWIN_FALSE='' | |
| BUILD_CYGWIN_TRUE='#' | |
| BUILD_DEVCAIRO_FALSE='#' | |
| BUILD_DEVCAIRO_TRUE='' | |
| BUILD_HTML_FALSE='' | |
| BUILD_HTML_TRUE='#' | |
| BUILD_INCLUDED_LIBINTL='no' | |
| BUILD_LIBINTL_FALSE='' | |
| BUILD_LIBINTL_TRUE='#' | |
| BUILD_LTO_FALSE='' | |
| BUILD_LTO_TRUE='#' | |
| BUILD_PCRE_FALSE='' | |
| BUILD_PCRE_TRUE='#' | |
| BUILD_R='' | |
| BUILD_TRE_FALSE='#' | |
| BUILD_TRE_TRUE='' | |
| BUILD_TZONE_FALSE='' | |
| BUILD_TZONE_TRUE='#' | |
| BUILD_X11_FALSE='#' | |
| BUILD_X11_TRUE='' | |
| BUILD_XDR_FALSE='' | |
| BUILD_XDR_TRUE='#' | |
| BUILD_XZ_FALSE='' | |
| BUILD_XZ_TRUE='#' | |
| BUILD_ZLIB_FALSE='' | |
| BUILD_ZLIB_TRUE='#' | |
| BYTE_COMPILE_PACKAGES_FALSE='#' | |
| BYTE_COMPILE_PACKAGES_TRUE='' | |
| CAIROX11_CPPFLAGS='-I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/harfbuzz/1.1.3/include/harfbuzz -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/cairo/1.14.6_1/include/cairo -I/bio/linuxbrew/Cellar/glib/2.46.2/include/glib-2.0 -I/bio/linuxbrew/Cellar/glib/2.46.2/lib/glib-2.0/include -I/bio/linuxbrew/Cellar/pixman/0.34.0/include/pixman-1 -I/bio/linuxbrew/Cellar/fontconfig/2.11.1_2/include -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16' | |
| CAIROX11_LIBS='-L/bio/linuxbrew/Cellar/pango/1.38.1/lib -L/bio/linuxbrew/Cellar/glib/2.46.2/lib -L/bio/linuxbrew/Cellar/libpng/1.6.21/lib -L/bio/linuxbrew/Cellar/cairo/1.14.6_1/lib -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo' | |
| CAIRO_CPPFLAGS='-I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/harfbuzz/1.1.3/include/harfbuzz -I/bio/linuxbrew/Cellar/pango/1.38.1/include/pango-1.0 -I/bio/linuxbrew/Cellar/cairo/1.14.6_1/include/cairo -I/bio/linuxbrew/Cellar/glib/2.46.2/include/glib-2.0 -I/bio/linuxbrew/Cellar/glib/2.46.2/lib/glib-2.0/include -I/bio/linuxbrew/Cellar/pixman/0.34.0/include/pixman-1 -I/bio/linuxbrew/Cellar/fontconfig/2.11.1_2/include -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16 -I/bio/linuxbrew/Cellar/freetype/2.6.3/include/freetype2 -I/bio/linuxbrew/Cellar/zlib/1.2.8/include -I/bio/linuxbrew/Cellar/libpng/1.6.21/include/libpng16' | |
| CAIRO_LIBS='-L/bio/linuxbrew/Cellar/pango/1.38.1/lib -L/bio/linuxbrew/Cellar/glib/2.46.2/lib -L/bio/linuxbrew/Cellar/libpng/1.6.21/lib -L/bio/linuxbrew/Cellar/cairo/1.14.6_1/lib -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo' | |
| CATOBJEXT='.gmo' | |
| CC='/bio/linuxbrew/bin/gcc-5' | |
| CFLAGS='-Os -w -pipe -march=core2 -D__ACCELERATE__' | |
| CFLAG_VISIBILITY='-fvisibility=hidden' | |
| COMPILE_FORTRAN_DOUBLE_COMPLEX_FALSE='' | |
| COMPILE_FORTRAN_DOUBLE_COMPLEX_TRUE='#' | |
| CPICFLAGS='-fpic' | |
| CPP='/bio/linuxbrew/bin/gcc-5 -E' | |
| CPPFLAGS='-isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include' | |
| CROSS_COMPILING_FALSE='' | |
| CROSS_COMPILING_TRUE='#' | |
| CURL_CONFIG='/bio/linuxbrew/bin/curl-config' | |
| CURL_CPPFLAGS='-I/bio/linuxbrew/Cellar/curl/7.47.1/include' | |
| CURL_LIBS='-L/bio/linuxbrew/Cellar/curl/7.47.1/lib -lcurl' | |
| CXX1X='/bio/linuxbrew/bin/g++-5' | |
| CXX1XFLAGS='-Os -w -pipe -march=core2 -D__ACCELERATE__' | |
| CXX1XPICFLAGS='-fpic' | |
| CXX1XSTD=' -std=c++11' | |
| CXX='/bio/linuxbrew/bin/g++-5' | |
| CXXCPP0='$(CXX) -E' | |
| CXXCPP='/bio/linuxbrew/bin/g++-5 -E' | |
| CXXFLAGS='-Os -w -pipe -march=core2 -D__ACCELERATE__' | |
| CXXPICFLAGS='-fpic' | |
| C_VISIBILITY='-fvisibility=hidden' | |
| DATADIRNAME='share' | |
| DEFS='-DHAVE_CONFIG_H' | |
| DSYMUTIL='' | |
| DUMPBIN='' | |
| DYLIB_EXT='.so' | |
| DYLIB_LD='$(CC)' | |
| DYLIB_LDFLAGS='-shared -fopenmp' | |
| DYLIB_UNDEFINED_ALLOWED_FALSE='#' | |
| DYLIB_UNDEFINED_ALLOWED_TRUE='' | |
| ECHO_C='' | |
| ECHO_N='-n' | |
| ECHO_T='' | |
| EGREP='/usr/bin/grep -E' | |
| EXEEXT='' | |
| F77='/bio/linuxbrew/bin/gfortran' | |
| F77_VISIBILITY='-fvisibility=hidden' | |
| FC='/bio/linuxbrew/bin/gfortran' | |
| FCFLAGS='-Os -w -pipe -march=core2' | |
| FCFLAGS_f90='' | |
| FCFLAGS_f95='' | |
| FCLIBS='' | |
| FCPICFLAGS='-fpic' | |
| FFLAGS='-Os -w -pipe -march=core2' | |
| FGREP='/usr/bin/grep -F' | |
| FLIBS=' -lgfortran -lm -lquadmath' | |
| FLIBS_IN_SO=' -lgfortran -lm -lquadmath' | |
| FOUNDATION_CPPFLAGS='' | |
| FOUNDATION_LIBS='' | |
| FPICFLAGS='-fpic' | |
| FW_VERSION='' | |
| GENCAT='gencat' | |
| GETWD='/usr/bin/pwd' | |
| GLIBC21='yes' | |
| GLIBC2='yes' | |
| GREP='/usr/bin/grep' | |
| HAVE_ASPRINTF='1' | |
| HAVE_CXX11='1' | |
| HAVE_FORTRAN_DOUBLE_COMPLEX='' | |
| HAVE_POSIX_PRINTF='1' | |
| HAVE_SNPRINTF='1' | |
| HAVE_VISIBILITY='1' | |
| HAVE_WPRINTF='0' | |
| INSTALL_DATA='${INSTALL} -m 644' | |
| INSTALL_INFO='/bio/linuxbrew/bin/install-info' | |
| INSTALL_PROGRAM='${INSTALL}' | |
| INSTALL_SCRIPT='${INSTALL}' | |
| INSTOBJEXT='.mo' | |
| INTERNET_LIBS='' | |
| INTLBISON='bison' | |
| INTLLIBS='' | |
| INTLOBJS='' | |
| INTL_LIBTOOL_SUFFIX_PREFIX='' | |
| INTL_MACOSX_LIBS='' | |
| JAR='' | |
| JAVA='' | |
| JAVAC='' | |
| JAVAH='' | |
| JAVA_CPPFLAGS0='' | |
| JAVA_HOME='' | |
| JAVA_LD_LIBRARY_PATH='' | |
| JAVA_LIBS0='' | |
| KPSEWHICH='/usr/bin/kpsewhich' | |
| LAPACK_LDFLAGS='' | |
| LAPACK_LIBS='-L$(R_HOME)/lib$(R_ARCH) -lRlapack' | |
| LD='/bio/linuxbrew/bin/ld' | |
| LDFLAGS=' -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib' | |
| LIBICONV='' | |
| LIBINTL='' | |
| LIBM='-lm' | |
| LIBMULTITHREAD='' | |
| LIBOBJS='' | |
| LIBPTH='' | |
| LIBPTH_PREFIX='' | |
| LIBR0='-L$(R_HOME)/lib$(R_ARCH)' | |
| LIBR1='-lR' | |
| LIBR_LDFLAGS='' | |
| LIBS=' -lpcre -llzma -lbz2 -lz -lrt -ldl -lm' | |
| LIBTHREAD='' | |
| LIBTOOL='$(SHELL) $(top_builddir)/libtool' | |
| LIBTOOL_DEPS='tools/ltmain.sh' | |
| LIBnn='lib64' | |
| LIPO='' | |
| LN_S='ln -s' | |
| LTLIBICONV='' | |
| LTLIBINTL='' | |
| LTLIBMULTITHREAD='' | |
| LTLIBOBJS='' | |
| LTLIBPTH='' | |
| LTLIBTHREAD='' | |
| LTO='' | |
| LTOALL='' | |
| MAINTAINER_MODE_FALSE='' | |
| MAINTAINER_MODE_TRUE='#' | |
| MAIN_CFLAGS='' | |
| MAIN_FFLAGS='' | |
| MAIN_LD='$(CC)' | |
| MAIN_LDFLAGS='-Wl,--export-dynamic -fopenmp' | |
| MAJ_MIN_VERSION='3.2' | |
| MAKE='make' | |
| MAKEINDEX='/usr/bin/makeindex' | |
| MAKEINFO='/bio/linuxbrew/bin/texi2any' | |
| MKDIR_P='/usr/bin/mkdir -p' | |
| NM='/bio/linuxbrew/bin/nm -B' | |
| NMEDIT='' | |
| NOTANGLE='false' | |
| OBJC='/bio/linuxbrew/bin/gcc-5' | |
| OBJCFLAGS='-Os -w -pipe -march=core2 -D__ACCELERATE__ -fobjc-exceptions' | |
| OBJCXX='/bio/linuxbrew/bin/g++-5' | |
| OBJCXXFLAGS='-Os -w -pipe -march=core2 -D__ACCELERATE__' | |
| OBJC_LIBS='-lobjc ' | |
| OBJDUMP='objdump' | |
| OBJEXT='o' | |
| OPENMP_CFLAGS='-fopenmp' | |
| OPENMP_CXXFLAGS='-fopenmp' | |
| OPENMP_FCFLAGS='-fopenmp' | |
| OPENMP_FFLAGS='-fopenmp' | |
| OSF_SH_BUG='"${@}"' | |
| OTOOL64='' | |
| OTOOL='' | |
| PACKAGE='R' | |
| PACKAGE_BUGREPORT='https://bugs.r-project.org' | |
| PACKAGE_NAME='R' | |
| PACKAGE_STRING='R 3.2.3' | |
| PACKAGE_TARNAME='R' | |
| PACKAGE_URL='https://www.r-project.org' | |
| PACKAGE_VERSION='3.2.3' | |
| PAGER='/usr/bin/less' | |
| PAPERCONF='false' | |
| PATH_SEPARATOR=':' | |
| PDFLATEX='/usr/bin/pdflatex' | |
| PDFTEX='/usr/bin/pdftex' | |
| PKGCONF='/bio/linuxbrew/bin/pkg-config' | |
| POSUB='po' | |
| PRI_MACROS_BROKEN='0' | |
| RANLIB='ranlib' | |
| RBLAS_LDFLAGS='' | |
| READLINE_LIBS='-lreadline -lncurses ' | |
| REALPATH='/usr/bin/realpath' | |
| RLAPACK_LDFLAGS='' | |
| RMATH_HAVE_EXPM1='# define HAVE_EXPM1 1' | |
| RMATH_HAVE_HYPOT='# define HAVE_HYPOT 1' | |
| RMATH_HAVE_LOG1P='# define HAVE_LOG1P 1' | |
| RMATH_HAVE_WORKING_LOG1P='# define HAVE_WORKING_LOG1P 1' | |
| R_ARCH='' | |
| R_BATCHSAVE='' | |
| R_BROWSER='/usr/bin/firefox' | |
| R_BZIPCMD='/bio/linuxbrew/bin/bzip2' | |
| R_CONFIG_ARGS=' '\''--prefix=/bio/linuxbrew/Cellar/r/3.2.3'\'' '\''--with-libintl-prefix=/bio/linuxbrew/opt/gettext'\'' '\''--enable-memory-profiling'\'' '\''--libdir=/bio/linuxbrew/Cellar/r/3.2.3/lib'\'' '\''--enable-R-shlib'\'' '\''--with-blas=-framework Accelerate'\'' '\''--with-lapack'\'' '\''CC=/bio/linuxbrew/bin/gcc-5'\'' '\''CFLAGS=-Os -w -pipe -march=core2 -D__ACCELERATE__'\'' '\''LDFLAGS= -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib'\'' '\''CPPFLAGS=-isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include'\'' '\''F77=/bio/linuxbrew/bin/gfortran'\'' '\''FFLAGS=-Os -w -pipe -march=core2'\'' '\''CXX=/bio/linuxbrew/bin/g++-5'\'' '\''CXXFLAGS=-Os -w -pipe -march=core2 -D__ACCELERATE__'\'' '\''OBJC=/bio/linuxbrew/bin/gcc-5'\'' '\''OBJCFLAGS=-Os -w -pipe -march=core2 -D__ACCELERATE__'\'' '\''FC=/bio/linuxbrew/bin/gfortran'\'' '\''FCFLAGS=-Os -w -pipe -march=core2'\''' | |
| R_DEFS='' | |
| R_DYLIB_EXT='.so' | |
| R_GZIPCMD='/usr/bin/gzip' | |
| R_JAVA_LD_LIBRARY_PATH='' | |
| R_LD_LIBRARY_PATH='/bio/linuxbrew/opt/gettext/lib:/bio/linuxbrew/opt/readline/lib:/bio/linuxbrew/opt/openssl/lib:/bio/linuxbrew/Cellar/gettext/0.19.7/lib:/bio/linuxbrew/Cellar/readline/6.3.8/lib:/bio/linuxbrew/Cellar/openssl/1.0.2f/lib' | |
| R_OPENMP_CFLAGS='-fopenmp' | |
| R_OPENMP_FFLAGS='-fopenmp' | |
| R_OS='linux-gnu' | |
| R_OSTYPE='unix' | |
| R_PAPERSIZE='a4' | |
| R_PDFVIEWER='/usr/bin/xdg-open' | |
| R_PLATFORM='x86_64-pc-linux-gnu' | |
| R_PRINTCMD='lpr' | |
| R_PROFILING='' | |
| R_RD4PDF='times,hyper' | |
| R_SHELL='/bin/sh' | |
| R_SYSTEM_ABI='linux,gcc,gxx,gfortran,?' | |
| R_UNZIPCMD='/bio/linuxbrew/bin/unzip' | |
| R_XTRA_CFLAGS='' | |
| R_XTRA_CPPFLAGS2='-I$(R_INCLUDE_DIR)' | |
| R_XTRA_CPPFLAGS='' | |
| R_XTRA_CXXFLAGS='' | |
| R_XTRA_FFLAGS='' | |
| R_XTRA_LIBS='' | |
| R_ZIPCMD='/usr/bin/zip' | |
| Rshlibpath_var='LD_LIBRARY_PATH' | |
| SAFE_FFLAGS='-Os -w -pipe -march=core2 -ffloat-store' | |
| SED='/bio/linuxbrew/bin/sed' | |
| SHELL='/bin/sh' | |
| SHLIB_CFLAGS='' | |
| SHLIB_CXX1XLD='$(CXX1X) $(CXX1XSTD)' | |
| SHLIB_CXX1XLDFLAGS='-shared' | |
| SHLIB_CXXFLAGS='' | |
| SHLIB_CXXLD='$(CXX)' | |
| SHLIB_CXXLDFLAGS='-shared' | |
| SHLIB_EXT='.so' | |
| SHLIB_FCLD='$(FC)' | |
| SHLIB_FCLDFLAGS='-shared' | |
| SHLIB_FFLAGS='' | |
| SHLIB_LD='$(CC)' | |
| SHLIB_LDFLAGS='-shared' | |
| SHLIB_LIBADD='' | |
| SHLIB_OPENMP_CFLAGS='-fopenmp' | |
| SHLIB_OPENMP_CXXFLAGS='-fopenmp' | |
| SHLIB_OPENMP_FCFLAGS='-fopenmp' | |
| SHLIB_OPENMP_FFLAGS='-fopenmp' | |
| STATICR1='-Wl,--whole-archive' | |
| STATICR2='-Wl,--no-whole-archive' | |
| STRIP='strip' | |
| TAR='/usr/bin/gtar' | |
| TCLTK_CPPFLAGS='-I/usr/include -I/usr/include ' | |
| TCLTK_LIBS='-L/usr/lib64 -ltcl8.5 -L/usr/lib64 -ltk8.5 -lX11' | |
| TCL_CONFIG='/usr/lib64/tclConfig.sh' | |
| TEX='/usr/bin/tex' | |
| TEXI2DVI='/bio/linuxbrew/bin/texi2dvi' | |
| TEXI2DVICMD='/bio/linuxbrew/bin/texi2dvi' | |
| TIRPC_CPPFLAGS='' | |
| TK_CONFIG='/usr/lib64/tkConfig.sh' | |
| USE_EXPORTFILES_FALSE='' | |
| USE_EXPORTFILES_TRUE='#' | |
| USE_EXTERNAL_BLAS_FALSE='' | |
| USE_EXTERNAL_BLAS_TRUE='#' | |
| USE_EXTERNAL_LAPACK_FALSE='' | |
| USE_EXTERNAL_LAPACK_TRUE='#' | |
| USE_ICU='' | |
| USE_ICU_APPLE='' | |
| USE_INCLUDED_LIBINTL='no' | |
| USE_MMAP_ZLIB_FALSE='' | |
| USE_MMAP_ZLIB_TRUE='#' | |
| USE_NLS='yes' | |
| USE_NLS_FALSE='#' | |
| USE_NLS_TRUE='' | |
| USE_RECOMMENDED_PACKAGES_FALSE='#' | |
| USE_RECOMMENDED_PACKAGES_TRUE='' | |
| USE_VECLIB_G95FIX_FALSE='' | |
| USE_VECLIB_G95FIX_TRUE='#' | |
| VERSION='3.2.3' | |
| WANT_JAVA_FALSE='#' | |
| WANT_JAVA_TRUE='' | |
| WANT_R_FRAMEWORK_FALSE='' | |
| WANT_R_FRAMEWORK_TRUE='#' | |
| WANT_R_SHLIB_FALSE='#' | |
| WANT_R_SHLIB_TRUE='' | |
| WANT_R_STATIC_FALSE='' | |
| WANT_R_STATIC_TRUE='#' | |
| WHICH='/usr/bin/which' | |
| WOE32DLL='no' | |
| XMKMF='' | |
| XTRA_INTL_CPPFLAGS='' | |
| X_CFLAGS='' | |
| X_EXTRA_LIBS='' | |
| X_LIBS=' -lX11 -lXt -lXmu' | |
| X_PRE_LIBS=' -lSM -lICE' | |
| YACC='bison -y' | |
| YFLAGS='' | |
| ac_ct_CC='/bio/linuxbrew/bin/gcc-5' | |
| ac_ct_CXX='' | |
| ac_ct_DUMPBIN='' | |
| ac_ct_F77='' | |
| ac_ct_FC='' | |
| ac_ct_OBJC='' | |
| bindir='${exec_prefix}/bin' | |
| build='x86_64-pc-linux-gnu' | |
| build_alias='' | |
| build_cpu='x86_64' | |
| build_os='linux-gnu' | |
| build_vendor='pc' | |
| config_opts=' '\''--prefix=/bio/linuxbrew/Cellar/r/3.2.3'\'' '\''--with-libintl-prefix=/bio/linuxbrew/opt/gettext'\'' '\''--enable-memory-profiling'\'' '\''--libdir=/bio/linuxbrew/Cellar/r/3.2.3/lib'\'' '\''--enable-R-shlib'\'' '\''--with-blas=-framework Accelerate'\'' '\''--with-lapack'\'' '\''CC=/bio/linuxbrew/bin/gcc-5'\'' '\''CFLAGS=-Os -w -pipe -march=core2 -D__ACCELERATE__'\'' '\''LDFLAGS= -Wl,--dynamic-linker=/bio/linuxbrew/lib/ld.so -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -L/bio/linuxbrew/opt/openssl/lib'\'' '\''CPPFLAGS=-isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I/bio/linuxbrew/opt/openssl/include'\'' '\''F77=/bio/linuxbrew/bin/gfortran'\'' '\''FFLAGS=-Os -w -pipe -march=core2'\'' '\''CXX=/bio/linuxbrew/bin/g++-5'\'' '\''CXXFLAGS=-Os -w -pipe -march=core2 -D__ACCELERATE__'\'' '\''OBJC=/bio/linuxbrew/bin/gcc-5'\'' '\''OBJCFLAGS=-Os -w -pipe -march=core2 -D__ACCELERATE__'\'' '\''FC=/bio/linuxbrew/bin/gfortran'\'' '\''FCFLAGS=-Os -w -pipe -march=core2'\''' | |
| custom_JAVA_CPPFLAGS='~autodetect~' | |
| custom_JAVA_HOME='' | |
| custom_JAVA_LD_LIBRARY_PATH='~autodetect~' | |
| custom_JAVA_LIBS='~autodetect~' | |
| datadir='${datarootdir}' | |
| datarootdir='${prefix}/share' | |
| docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' | |
| dvidir='${docdir}' | |
| exec_prefix='${prefix}' | |
| host='x86_64-pc-linux-gnu' | |
| host_alias='' | |
| host_cpu='x86_64' | |
| host_os='linux-gnu' | |
| host_vendor='pc' | |
| htmldir='${docdir}' | |
| includedir='${prefix}/include' | |
| infodir='${datarootdir}/info' | |
| libdir='/bio/linuxbrew/Cellar/r/3.2.3/lib' | |
| libexecdir='${exec_prefix}/libexec' | |
| localedir='${datarootdir}/locale' | |
| localstatedir='${prefix}/var' | |
| lt_ECHO='echo' | |
| mandir='${datarootdir}/man' | |
| mkdir_p='/usr/bin/mkdir -p' | |
| oldincludedir='/usr/include' | |
| pdfdir='${docdir}' | |
| prefix='/bio/linuxbrew/Cellar/r/3.2.3' | |
| program_transform_name='s,x,x,' | |
| psdir='${docdir}' | |
| r_arch='' | |
| rdocdir='${rhome}/doc' | |
| rincludedir='${rhome}/include' | |
| rsharedir='${rhome}/share' | |
| sbindir='${exec_prefix}/sbin' | |
| sharedstatedir='${prefix}/com' | |
| shlibpath_var='LD_LIBRARY_PATH' | |
| striplib='strip --strip-unneeded' | |
| stripstaticlib='strip --strip-debug' | |
| sysconfdir='${prefix}/etc' | |
| target_alias='' | |
| use_tcltk='yes' | |
| ## ------------------- ## | |
| ## File substitutions. ## | |
| ## ------------------- ## | |
| r_cc_lo_rules_frag='Makefrag.cc_lo' | |
| r_cc_rules_frag='Makefrag.cc' | |
| r_cxx_rules_frag='Makefrag.cxx' | |
| r_objc_rules_frag='Makefrag.m' | |
| ## ----------- ## | |
| ## confdefs.h. ## | |
| ## ----------- ## | |
| /* confdefs.h */ | |
| #define PACKAGE_NAME "R" | |
| #define PACKAGE_TARNAME "R" | |
| #define PACKAGE_VERSION "3.2.3" | |
| #define PACKAGE_STRING "R 3.2.3" | |
| #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | |
| #define PACKAGE_URL "https://www.r-project.org" | |
| #define PACKAGE "R" | |
| #define VERSION "3.2.3" | |
| #define R_PLATFORM "x86_64-pc-linux-gnu" | |
| #define R_CPU "x86_64" | |
| #define R_VENDOR "pc" | |
| #define R_OS "linux-gnu" | |
| #define Unix 1 | |
| #define R_ARCH "" | |
| #define HAVE_VISIBILITY_ATTRIBUTE 1 | |
| #define STDC_HEADERS 1 | |
| #define HAVE_SYS_TYPES_H 1 | |
| #define HAVE_SYS_STAT_H 1 | |
| #define HAVE_STDLIB_H 1 | |
| #define HAVE_STRING_H 1 | |
| #define HAVE_MEMORY_H 1 | |
| #define HAVE_STRINGS_H 1 | |
| #define HAVE_INTTYPES_H 1 | |
| #define HAVE_STDINT_H 1 | |
| #define HAVE_UNISTD_H 1 | |
| #define __EXTENSIONS__ 1 | |
| #define _ALL_SOURCE 1 | |
| #define _GNU_SOURCE 1 | |
| #define _POSIX_PTHREAD_SEMANTICS 1 | |
| #define _TANDEM_SOURCE 1 | |
| #define HAVE_DLFCN_H 1 | |
| #define LT_OBJDIR ".libs/" | |
| #define HAVE_LIBM 1 | |
| #define HAVE_LIBDL 1 | |
| #define HAVE_READLINE_HISTORY_H 1 | |
| #define HAVE_READLINE_READLINE_H 1 | |
| #define HAVE_LIBNCURSES 1 | |
| #define HAVE_LIBREADLINE 1 | |
| #define HAVE_HISTORY_TRUNCATE_FILE 1 | |
| #define HAVE_RL_COMPLETION_MATCHES 1 | |
| #define STDC_HEADERS 1 | |
| #define HAVE_DIRENT_H 1 | |
| #define HAVE_SYS_WAIT_H 1 | |
| #define HAVE_ARPA_INET_H 1 | |
| #define HAVE_DLFCN_H 1 | |
| #define HAVE_ELF_H 1 | |
| #define HAVE_FEATURES_H 1 | |
| #define HAVE_FCNTL_H 1 | |
| #define HAVE_FPU_CONTROL_H 1 | |
| #define HAVE_GLOB_H 1 | |
| #define HAVE_GRP_H 1 | |
| #define HAVE_LANGINFO_H 1 | |
| #define HAVE_NETDB_H 1 | |
| #define HAVE_NETINET_IN_H 1 | |
| #define HAVE_PWD_H 1 | |
| #define HAVE_SCHED_H 1 | |
| #define HAVE_STRINGS_H 1 | |
| #define HAVE_SYS_PARAM_H 1 | |
| #define HAVE_SYS_RESOURCE_H 1 | |
| #define HAVE_SYS_SELECT_H 1 | |
| #define HAVE_SYS_SOCKET_H 1 | |
| #define HAVE_SYS_STAT_H 1 | |
| #define HAVE_SYS_TIME_H 1 | |
| #define HAVE_SYS_TIMES_H 1 | |
| #define HAVE_SYS_UTSNAME_H 1 | |
| #define HAVE_UNISTD_H 1 | |
| #define HAVE_UTIME_H 1 | |
| #define HAVE_STDALIGN_H 1 | |
| #define HAVE_ERRNO_H 1 | |
| #define HAVE_INTTYPES_H 1 | |
| #define HAVE_LIMITS_H 1 | |
| #define HAVE_LOCALE_H 1 | |
| #define HAVE_STDARG_H 1 | |
| #define HAVE_STDBOOL_H 1 | |
| #define HAVE_STDINT_H 1 | |
| #define HAVE_STRING_H 1 | |
| #define HAVE_DECL_SIGSETJMP 1 | |
| #define HAVE_DECL_SIGLONGJMP 1 | |
| #define HAVE_POSIX_SETJMP 1 | |
| #define HAVE_GLIBC2 1 | |
| #define RETSIGTYPE void | |
| #define HAVE_INT64_T 1 | |
| #define HAVE_INT_FAST64_T 1 | |
| #define HAVE_DECL_SIZE_MAX 1 | |
| #define R_SOCKLEN_T socklen_t | |
| #define HAVE_STACK_T 1 | |
| #define HAVE_INTPTR_T 1 | |
| #define HAVE_UINTPTR_T 1 | |
| #define R_INLINE inline | |
| #define SIZEOF_INT 4 | |
| #define INT_32_BITS 1 | |
| #define SIZEOF_LONG 8 | |
| #define SIZEOF_LONG_LONG 8 | |
| #define SIZEOF_DOUBLE 8 | |
| #define SIZEOF_SIZE_T 8 | |
| #define HAVE_LONG_DOUBLE 1 | |
| #define SIZEOF_LONG_DOUBLE 16 | |
| #define F77_FUNC(name,NAME) name ## _ | |
| #define F77_FUNC_(name,NAME) name ## _ | |
| #define HAVE_F77_UNDERSCORE 1 | |
| #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | |
| #define SHLIB_EXT ".so" | |
| #define HAVE_CXX11 1 | |
| #define HAVE_OPENMP 1 | |
| #define HAVE_OFF_T 1 | |
| #define HAVE_ALLOCA_H 1 | |
| #define HAVE_ALLOCA 1 | |
| #define HAVE_DECL_ALLOCA 1 | |
| #define HAVE_EXPM1 1 | |
| #define HAVE_HYPOT 1 | |
| #define HAVE_LOG1P 1 | |
| #define HAVE_LOG1PL 1 | |
| #define HAVE_LOG2 1 | |
| #define HAVE_LOG10 1 | |
| #define HAVE_NEARBYINT 1 | |
| #define HAVE_NEARBYINTL 1 | |
| #define HAVE_POWL 1 | |
| #define HAVE_RINT 1 | |
| #define HAVE_RINTL 1 | |
| #define HAVE_VA_COPY 1 | |
| #define HAVE_ISBLANK 1 | |
| #define HAVE_EXP10 1 | |
| #define HAVE_FSEEKO 1 | |
| #define HAVE_FTELLO 1 | |
| #define HAVE_MATHERR 1 | |
| #define HAVE_FCNTL 1 | |
| #define HAVE_GETGRGID 1 | |
| #define HAVE_GETPWUID 1 | |
| #define HAVE_KILL 1 | |
| #define HAVE_SIGACTION 1 | |
| #define HAVE_SIGALTSTACK 1 | |
| #define HAVE_SIGEMPTYSET 1 | |
| #define HAVE_FDOPEN 1 | |
| #define HAVE_POPEN 1 | |
| #define HAVE_SETENV 1 | |
| #define HAVE_UNSETENV 1 | |
| #define HAVE_GETRLIMIT 1 | |
| #define HAVE_GETRUSAGE 1 | |
| #define HAVE_GETPRIORITY 1 | |
| #define HAVE_CHMOD 1 | |
| #define HAVE_MKFIFO 1 | |
| #define HAVE_STAT 1 | |
| #define HAVE_UMASK 1 | |
| #define HAVE_GETTIMEOFDAY 1 | |
| #define HAVE_UTIMES 1 | |
| #define HAVE_TIMES 1 | |
| #define HAVE_GMTIME_R 1 | |
| #define HAVE_LOCALTIME_R 1 | |
| #define HAVE_NL_LANGINFO 1 | |
| #define HAVE_ACCESS 1 | |
| #define HAVE_CHDIR 1 | |
| #define HAVE_EXECV 1 | |
| #define HAVE_FTRUNCATE 1 | |
| #define HAVE_GETCWD 1 | |
| #define HAVE_GETEUID 1 | |
| #define HAVE_GETUID 1 | |
| #define HAVE_LINK 1 | |
| #define HAVE_READLINK 1 | |
| #define HAVE_SYMLINK 1 | |
| #define HAVE_SYSCONF 1 | |
| #define HAVE_SCHED_SETAFFINITY 1 | |
| #define HAVE_SCHED_GETAFFINITY 1 | |
| #define HAVE_UTIME 1 | |
| #define HAVE_LIBRT 1 | |
| #define HAVE_CLOCK_GETTIME 1 | |
| #define HAVE_TIMESPEC_GET 1 | |
| #define HAVE_PUTENV 1 | |
| #define HAVE_DECL_PUTENV 1 | |
| #define HAVE_VASPRINTF 1 | |
| #define HAVE_DECL_VASPRINTF 1 | |
| #define HAVE_MEMPCPY 1 | |
| #define HAVE_REALPATH 1 | |
| #define HAVE_DECL_REALPATH 1 | |
| #define HAVE_GLOB 1 | |
| #define HAVE_OFF_T 1 | |
| #define HAVE_ISNAN 1 | |
| #define HAVE_DECL_ISFINITE 1 | |
| #define HAVE_DECL_ISNAN 1 | |
| #define IEEE_754 1 | |
| #define HAVE_PUTENV_UNSET 1 | |
| #define HAVE_LANGINFO_CODESET 1 | |
| #define HAVE_MKDTEMP 1 | |
| #define HAVE_STRDUP 1 | |
| #define HAVE_STRNCASECMP 1 | |
| #define HAVE_DECL_MKDTEMP 1 | |
| #define HAVE_DECL_STRDUP 1 | |
| #define HAVE_DECL_STRNCASECMP 1 | |
| #define HAVE_WORKING_CALLOC 1 | |
| #define HAVE_WORKING_ISFINITE 1 | |
| #define HAVE_WORKING_LOG1P 1 | |
| #define HAVE_WORKING_FTELL 1 | |
| #define HAVE_WORKING_SIGACTION 1 | |
| #define HAVE_WORKING_64BIT_MKTIME 1 | |
| #define HAVE_CABS 1 | |
| #define HAVE_CARG 1 | |
| #define HAVE_CEXP 1 | |
| #define HAVE_CLOG 1 | |
| #define HAVE_CSQRT 1 | |
| #define HAVE_CPOW 1 | |
| #define HAVE_CCOS 1 | |
| #define HAVE_CSIN 1 | |
| #define HAVE_CTAN 1 | |
| #define HAVE_CACOS 1 | |
| #define HAVE_CASIN 1 | |
| #define HAVE_CATAN 1 | |
| #define HAVE_CCOSH 1 | |
| #define HAVE_CSINH 1 | |
| #define HAVE_CTANH 1 | |
| #define HAVE_TM_ZONE 1 | |
| #define HAVE_TM_GMTOFF 1 | |
| #define HAVE_ICONV_H 1 | |
| #define HAVE_ICONV 1 | |
| #define HAVE_ICONV 1 | |
| #define ICONV_CONST | |
| #define HAVE_WCHAR_H 1 | |
| #define HAVE_WCTYPE_H 1 | |
| #define HAVE_MBRTOWC 1 | |
| #define HAVE_WCRTOMB 1 | |
| #define HAVE_WCSCOLL 1 | |
| #define HAVE_WCSFTIME 1 | |
| #define HAVE_WCSTOD 1 | |
| #define HAVE_MBSTOWCS 1 | |
| #define HAVE_WCSTOMBS 1 | |
| #define HAVE_WCTRANS 1 | |
| #define HAVE_ISWBLANK 1 | |
| #define HAVE_WCTYPE 1 | |
| #define HAVE_ISWCTYPE 1 | |
| #define HAVE_WCTRANS_T 1 | |
| #define HAVE_MBSTATE_T 1 | |
| #define HAVE_X11 1 | |
| #define HAVE_KEYSYM 1 | |
| #define HAVE_X11_Xmu 1 | |
| #define HAVE_PANGOCAIRO 1 | |
| #define HAVE_WORKING_CAIRO 1 | |
| #define HAVE_CAIRO_PDF 1 | |
| #define HAVE_CAIRO_PS 1 | |
| #define HAVE_CAIRO_SVG 1 | |
| #define HAVE_TCLTK 1 | |
| #define HAVE_BSD_NETWORKING 1 | |
| #define HAVE_SOCKETS 1 | |
| #define HAVE_INTERNET 1 | |
| #define SUPPORT_LIBXML 1 | |
| #define HAVE_JPEG 1 | |
| #define HAVE_PNG 1 | |
| #define HAVE_TIFFIO_H 1 | |
| #define HAVE_TIFF 1 | |
| #define HAVE_BZLIB_H 1 | |
| #define HAVE_LZMA_H 1 | |
| #define HAVE_LZMA 1 | |
| #define HAVE_PCRE_H 1 | |
| #define HAVE_CURL_CURL_H 1 | |
| #define HAVE_POSIX_LEAPSECONDS 1 | |
| #define HAVE_SYS_TIME_H 1 | |
| #define HAVE_STDLIB_H 1 | |
| #define HAVE_UNISTD_H 1 | |
| #define HAVE_SYS_PARAM_H 1 | |
| #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | |
| #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | |
| #define HAVE_SETITIMER 1 | |
| #define R_PROFILING 1 | |
| #define R_MEMORY_PROFILING 1 | |
| #define HAVE_FSEEKO 1 | |
| #define NVALGRIND 1 | |
| #define VALGRIND_LEVEL 0 | |
| #define HAVE_LIBC_STACK_END 1 | |
| #define R_PRINTCMD "lpr" | |
| #define SUPPORT_OPENMP 1 | |
| #define HAVE_VISIBILITY 1 | |
| #define HAVE_STDINT_H_WITH_UINTMAX 1 | |
| #define HAVE_GETPAGESIZE 1 | |
| #define HAVE_MMAP 1 | |
| #define INTDIV0_RAISES_SIGFPE 1 | |
| #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | |
| #define HAVE_UNSIGNED_LONG_LONG_INT 1 | |
| #define HAVE_UNSIGNED_LONG_LONG 1 | |
| #define HAVE_UINTMAX_T 1 | |
| #define HAVE_INTTYPES_H 1 | |
| #define HAVE_BUILTIN_EXPECT 1 | |
| #define HAVE_ARGZ_H 1 | |
| #define HAVE_INTTYPES_H 1 | |
| #define HAVE_LIMITS_H 1 | |
| #define HAVE_UNISTD_H 1 | |
| #define HAVE_SYS_PARAM_H 1 | |
| #define HAVE_GETCWD 1 | |
| #define HAVE_GETEGID 1 | |
| #define HAVE_GETEUID 1 | |
| #define HAVE_GETGID 1 | |
| #define HAVE_GETUID 1 | |
| #define HAVE_MEMPCPY 1 | |
| #define HAVE_MUNMAP 1 | |
| #define HAVE_STPCPY 1 | |
| #define HAVE_STRCASECMP 1 | |
| #define HAVE_STRDUP 1 | |
| #define HAVE_STRTOUL 1 | |
| #define HAVE_TSEARCH 1 | |
| #define HAVE_ARGZ_COUNT 1 | |
| #define HAVE_ARGZ_STRINGIFY 1 | |
| #define HAVE_ARGZ_NEXT 1 | |
| #define HAVE___FSETLOCKING 1 | |
| #define HAVE_DECL_FEOF_UNLOCKED 1 | |
| #define HAVE_DECL_FGETS_UNLOCKED 1 | |
| #define HAVE_ICONV 1 | |
| #define ICONV_CONST | |
| #define HAVE_NL_LOCALE_NAME 1 | |
| #define HAVE_LONG_LONG_INT 1 | |
| #define HAVE_WCHAR_T 1 | |
| #define HAVE_WINT_T 1 | |
| #define HAVE_INTMAX_T 1 | |
| #define HAVE_POSIX_PRINTF 1 | |
| #define HAVE_STDINT_H 1 | |
| #define HAVE_STDINT_H 1 | |
| #define HAVE_STDDEF_H 1 | |
| #define HAVE_STDLIB_H 1 | |
| #define HAVE_STRING_H 1 | |
| #define HAVE_ASPRINTF 1 | |
| #define HAVE_FWPRINTF 1 | |
| #define HAVE_PUTENV 1 | |
| #define HAVE_SETENV 1 | |
| #define HAVE_SETLOCALE 1 | |
| #define HAVE_SNPRINTF 1 | |
| #define HAVE_WCSLEN 1 | |
| #define HAVE_DECL__SNPRINTF 0 | |
| #define HAVE_DECL__SNWPRINTF 0 | |
| #define HAVE_DECL_GETC_UNLOCKED 1 | |
| #define HAVE_LANGINFO_CODESET 1 | |
| #define HAVE_LC_MESSAGES 1 | |
| #define ENABLE_NLS 1 | |
| #define HAVE_GETTEXT 1 | |
| #define HAVE_DCGETTEXT 1 | |
| configure: exit 0 | |
| ## ---------------------- ## | |
| ## Running config.status. ## | |
| ## ---------------------- ## | |
| This file was extended by R config.status 3.2.3, which was | |
| generated by GNU Autoconf 2.69. Invocation command line was | |
| CONFIG_FILES = | |
| CONFIG_HEADERS = | |
| CONFIG_LINKS = | |
| CONFIG_COMMANDS = | |
| $ ./config.status src/unix/Makefile | |
| on 526080-s598783.unimelb.edu.au | |
| config.status:1938: creating src/unix/Makefile | |
| ## ---------------------- ## | |
| ## Running config.status. ## | |
| ## ---------------------- ## | |
| This file was extended by R config.status 3.2.3, which was | |
| generated by GNU Autoconf 2.69. Invocation command line was | |
| CONFIG_FILES = | |
| CONFIG_HEADERS = | |
| CONFIG_LINKS = | |
| CONFIG_COMMANDS = | |
| $ ./config.status src/main/Makefile | |
| on 526080-s598783.unimelb.edu.au | |
| config.status:1938: creating src/main/Makefile |
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