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October 5, 2022 22:58
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| docker_only | conda_only | both | |
|---|---|---|---|
| 2to3 | |||
| 2to3-3.8 | |||
| acountry | |||
| activate | |||
| acyclic | |||
| adig | |||
| aggregate_profile.pl | |||
| aggregate_scores_in_intervals.py | |||
| ahost | |||
| align_print_template.py | |||
| animate | |||
| annotate | |||
| augur | |||
| auspice | |||
| autopoint | |||
| aws | |||
| axt_extract_ranges.py | |||
| axt_to_fasta.py | |||
| axt_to_lav.py | |||
| axt_to_maf.py | |||
| bash | |||
| bashbug | |||
| bcomps | |||
| bdftogd | |||
| bed_bigwig_profile.py | |||
| bed_build_windows.py | |||
| bed_complement.py | |||
| bed_count_by_interval.py | |||
| bed_count_overlapping.py | |||
| bed_coverage_by_interval.py | |||
| bed_coverage.py | |||
| bed_diff_basewise_summary.py | |||
| bed_extend_to.py | |||
| bed_intersect_basewise.py | |||
| bed_intersect.py | |||
| bed_merge_overlapping.py | |||
| bed_rand_intersect.py | |||
| bed_subtract_basewise.py | |||
| bin | |||
| bnMapper.py | |||
| brotli | |||
| bunzip2 | |||
| bzcat | |||
| bzcmp | |||
| bzdiff | |||
| bzegrep | |||
| bzexe | |||
| bzfgrep | |||
| bzgrep | |||
| bzip2 | |||
| bzip2recover | |||
| bzless | |||
| bzmore | |||
| cairo-trace | |||
| captoinfo | |||
| cbc | |||
| ccomps | |||
| circo | |||
| cjpeg | |||
| clear | |||
| clp | |||
| cluster | |||
| cmark | |||
| cmpfillin | |||
| compare | |||
| compile_et | |||
| composite | |||
| conda | |||
| conda-env | |||
| conjure | |||
| constellations | |||
| convert | |||
| corelist | |||
| corepack | |||
| cpan | |||
| cpan5.28-x86_64-linux-gnu | |||
| cph | |||
| c_rehash | |||
| csv2tsv | |||
| csvtk | |||
| curl | |||
| curl-config | |||
| cwebp | |||
| deactivate | |||
| delaunay | |||
| derb | |||
| diffimg | |||
| dijkstra | |||
| display | |||
| div_snp_table_chr.py | |||
| djpeg | |||
| docutils | |||
| dot | |||
| dot2gxl | |||
| dot_builtins | |||
| dsdp5 | |||
| dvipdf | |||
| dwebp | |||
| edgepaint | |||
| einsi | |||
| enc2xs | |||
| encguess | |||
| entrypoint | |||
| entrypoint-aws-batch | |||
| envdir | |||
| envsubst | |||
| eps2eps | |||
| erb | |||
| erb2.5 | |||
| extract_definitions.py | |||
| f2py | |||
| f2py3 | |||
| f2py3.8 | |||
| fasttree | |||
| FastTree | |||
| FastTreeDblMP | |||
| FastTreeMP | |||
| faToVcf | |||
| fax2ps | |||
| fax2tiff | |||
| fc-cache | |||
| fc-cat | |||
| fc-conflist | |||
| fc-list | |||
| fc-match | |||
| fc-pattern | |||
| fc-query | |||
| fc-scan | |||
| fc-validate | |||
| fdp | |||
| fftns | |||
| fftnsi | |||
| fftwf-wisdom | |||
| fftwl-wisdom | |||
| fftw-wisdom | |||
| fftw-wisdom-to-conf | |||
| fido2-assert | |||
| fido2-cred | |||
| fido2-token | |||
| fill-aa | |||
| fill-an-ac | |||
| fill-fs | |||
| fill-ref-md5 | |||
| find_in_sorted_file.py | |||
| fonttools | |||
| freetype-config | |||
| fribidi | |||
| funzip | |||
| futurize | |||
| gc | |||
| gd2copypal | |||
| gd2togif | |||
| gd2topng | |||
| gdcmpgif | |||
| gdk-pixbuf-csource | |||
| gdk-pixbuf-pixdata | |||
| .gdk-pixbuf-post-link.sh | |||
| gdk-pixbuf-query-loaders | |||
| gdk-pixbuf-thumbnailer | |||
| gdparttopng | |||
| gdtopng | |||
| gem | |||
| gem2.5 | |||
| genbrk | |||
| gencfu | |||
| gencnval | |||
| gendict | |||
| gene_fourfold_sites.py | |||
| genrb | |||
| get_scores_in_intervals.py | |||
| gettext | |||
| gettextize | |||
| gettext.sh | |||
| gif2rgb | |||
| gif2webp | |||
| gifbuild | |||
| gifclrmp | |||
| giffix | |||
| giftext | |||
| giftogd2 | |||
| giftool | |||
| ginsi | |||
| git | |||
| git-cvsserver | |||
| gitk | |||
| git-lfs | |||
| git-receive-pack | |||
| git-shell | |||
| git-upload-archive | |||
| git-upload-pack | |||
| glpsol | |||
| gml2gv | |||
| gofasta | |||
| gpmetis | |||
| graphchk | |||
| graphml2gv | |||
| .graphviz-post-link.sh | |||
| grpc_cpp_plugin | |||
| grpc_csharp_plugin | |||
| grpc_node_plugin | |||
| grpc_objective_c_plugin | |||
| grpc_php_plugin | |||
| grpc_python_plugin | |||
| grpc_ruby_plugin | |||
| gs | |||
| gsbj | |||
| gsdj | |||
| gsdj500 | |||
| gsl-config | |||
| gsl-histogram | |||
| gslj | |||
| gslp | |||
| gsl-randist | |||
| gsnd | |||
| gss-client | |||
| gtk-builder-convert | |||
| gtk-demo | |||
| gtk-query-immodules-2.0 | |||
| gtk-update-icon-cache | |||
| gts2dxf | |||
| gts2oogl | |||
| gts2stl | |||
| gtscheck | |||
| gtscompare | |||
| gts-config | |||
| gtstemplate | |||
| gv2gml | |||
| gv2gxl | |||
| gvcolor | |||
| gvgen | |||
| gvmap | |||
| gvmap.sh | |||
| gvpack | |||
| gvpr | |||
| gxl2dot | |||
| gxl2gv | |||
| h2load | |||
| h2ph | |||
| h2xs | |||
| hb-ot-shape-closure | |||
| hb-shape | |||
| hb-subset | |||
| hb-view | |||
| iconv | |||
| icu-config | |||
| icuexportdata | |||
| icuinfo | |||
| identify | |||
| idle3 | |||
| idle3.8 | |||
| igzip | |||
| img2webp | |||
| import | |||
| infocmp | |||
| infotocap | |||
| instmodsh | |||
| interval_count_intersections.py | |||
| interval_join.py | |||
| int_seqs_to_char_strings.py | |||
| iqtree | |||
| iqtree2 | |||
| irb | |||
| irb2.5 | |||
| jpegtran | |||
| jpgicc | |||
| jp.py | |||
| jq | |||
| js | |||
| json_pp | |||
| jsonschema | |||
| jupyter | |||
| jupyter-migrate | |||
| jupyter-troubleshoot | |||
| jupyter-trust | |||
| k5srvutil | |||
| k8 | |||
| kadmin | |||
| kdestroy | |||
| keep-header | |||
| keyctl | |||
| kinit | |||
| klist | |||
| kpasswd | |||
| krb5-config | |||
| kswitch | |||
| ktutil | |||
| kvno | |||
| lav_to_axt.py | |||
| lav_to_maf.py | |||
| less | |||
| lessecho | |||
| lessfile | |||
| lesskey | |||
| lesspipe | |||
| libdeflate-gunzip | |||
| libdeflate-gzip | |||
| libnetcfg | |||
| libpng16-config | |||
| libpng-config | |||
| .librsvg-post-link.sh | |||
| .librsvg-pre-unlink.sh | |||
| libtool | |||
| libtoolize | |||
| line_select.py | |||
| linkicc | |||
| linsi | |||
| lprsetup.sh | |||
| lzcat | |||
| lzcmp | |||
| lzdiff | |||
| lzegrep | |||
| lzfgrep | |||
| lzgrep | |||
| lzless | |||
| lzma | |||
| lzmadec | |||
| lzmainfo | |||
| lzmore | |||
| lzop_build_offset_table.py | |||
| m2gmetis | |||
| maf_build_index.py | |||
| maf_chop.py | |||
| maf_chunk.py | |||
| maf_col_counts_all.py | |||
| maf_col_counts.py | |||
| maf_count.py | |||
| maf_covered_ranges.py | |||
| maf_covered_regions.py | |||
| maf_div_sites.py | |||
| maf_drop_overlapping.py | |||
| maf_extract_chrom_ranges.py | |||
| maf_extract_ranges_indexed.py | |||
| maf_extract_ranges.py | |||
| maf_filter_max_wc.py | |||
| maf_filter.py | |||
| mafft | |||
| mafft-distance | |||
| mafft-einsi | |||
| mafft-fftns | |||
| mafft-fftnsi | |||
| mafft-ginsi | |||
| mafft-homologs.rb | |||
| mafft-linsi | |||
| mafft-nwns | |||
| mafft-nwnsi | |||
| mafft-profile | |||
| mafft-qinsi | |||
| mafft-sparsecore.rb | |||
| mafft-xinsi | |||
| maf_gap_frequency.py | |||
| maf_gc_content.py | |||
| maf_interval_alignibility.py | |||
| maf_limit_to_species.py | |||
| maf_mapping_word_frequency.py | |||
| maf_mask_cpg.py | |||
| maf_mean_length_ungapped_piece.py | |||
| maf_percent_columns_matching.py | |||
| maf_percent_identity.py | |||
| maf_print_chroms.py | |||
| maf_print_scores.py | |||
| maf_randomize.py | |||
| maf_region_coverage_by_src.py | |||
| maf_select.py | |||
| maf_shuffle_columns.py | |||
| maf_species_in_all_files.py | |||
| maf_split_by_src.py | |||
| maf_thread_for_species.py | |||
| maf_tile_2bit.py | |||
| maf_tile_2.py | |||
| maf_tile.py | |||
| maf_to_axt.py | |||
| maf_to_concat_fasta.py | |||
| maf_to_fasta.py | |||
| maf_to_int_seqs.py | |||
| maf_translate_chars.py | |||
| maf_truncate.py | |||
| maf_word_frequency.py | |||
| magick | |||
| Magick++-config | |||
| MagickCore-config | |||
| magick-script | |||
| MagickWand-config | |||
| makeconv | |||
| mask_quality.py | |||
| matOptimize | |||
| matUtils | |||
| minimap2 | |||
| mm2gv | |||
| mMK_bitset.py | |||
| mogrify | |||
| montage | |||
| mpic++ | |||
| mpicc | |||
| mpiCC | |||
| mpicxx | |||
| mpiexec | |||
| mpif77 | |||
| mpif90 | |||
| mpifort | |||
| mpirun | |||
| mpmetis | |||
| msgattrib | |||
| msgcat | |||
| msgcmp | |||
| msgcomm | |||
| msgconv | |||
| msgen | |||
| msgexec | |||
| msgfilter | |||
| msgfmt | |||
| msggrep | |||
| msginit | |||
| msgmerge | |||
| msgunfmt | |||
| msguniq | |||
| my_print_defaults | |||
| mysql_config | |||
| ncurses6-config | |||
| ncursesw6-config | |||
| ndmetis | |||
| neato | |||
| nextalign | |||
| nextalign1 | |||
| nextalign2 | |||
| nextclade | |||
| nextclade1 | |||
| nextclade2 | |||
| .nextclade-post-link.sh | |||
| nextstrain | |||
| ngettext | |||
| nghttp | |||
| nghttpd | |||
| nghttpx | |||
| nib_chrom_intervals_to_fasta.py | |||
| nib_intervals_to_fasta.py | |||
| nib_length.py | |||
| node | |||
| nodejs | |||
| nop | |||
| normalizer | |||
| npm | |||
| npx | |||
| number-lines | |||
| nwns | |||
| nwnsi | |||
| ompi-clean | |||
| ompi_info | |||
| ompi-server | |||
| one_field_per_line.py | |||
| opal_wrapper | |||
| .openmpi-post-link.sh | |||
| openssl | |||
| opj_compress | |||
| opj_decompress | |||
| opj_dump | |||
| ortecc | |||
| orte-clean | |||
| orted | |||
| orte-info | |||
| orterun | |||
| orte-server | |||
| osage | |||
| oshc++ | |||
| oshcc | |||
| oshCC | |||
| oshcxx | |||
| oshfort | |||
| oshmem_info | |||
| oshrun | |||
| out_to_chain.py | |||
| paftools.js | |||
| pal2rgb | |||
| pangoLEARN | |||
| pangolearn.smk | |||
| pangolin | |||
| pangolin_data | |||
| pango-list | |||
| pango-segmentation | |||
| pango-view | |||
| pasteurize | |||
| patchwork | |||
| pbunzip2 | |||
| pbzcat | |||
| pbzip2 | |||
| pcre2-config | |||
| pcre2grep | |||
| pcre2_jit_test | |||
| pcre2test | |||
| pdf2dsc | |||
| pdf2ps | |||
| perl | |||
| perl5.28-x86_64-linux-gnu | |||
| perl5.32.1 | |||
| perlbug | |||
| perldoc | |||
| perlivp | |||
| perlthanks | |||
| perror | |||
| pf2afm | |||
| pfbtopfa | |||
| piconv | |||
| pigz | |||
| pip | |||
| pip3 | |||
| pkg-config | |||
| pkg-config.bin | |||
| pkgdata | |||
| pl2pm | |||
| pngfix | |||
| png-fix-itxt | |||
| pngtogd | |||
| pngtogd2 | |||
| pod2html | |||
| pod2man | |||
| pod2text | |||
| pod2usage | |||
| podchecker | |||
| podselect | |||
| pphs | |||
| ppm2tiff | |||
| prefix_lines.py | |||
| preprocessing.smk | |||
| pretty_table.py | |||
| printafm | |||
| profile2mat.pl | |||
| protoc | |||
| prove | |||
| prune | |||
| ps2ascii | |||
| ps2epsi | |||
| ps2pdf | |||
| ps2pdf12 | |||
| ps2pdf13 | |||
| ps2pdf14 | |||
| ps2pdfwr | |||
| ps2ps | |||
| ps2ps2 | |||
| psicc | |||
| ptar | |||
| ptardiff | |||
| ptargrep | |||
| pulptest | |||
| pydoc | |||
| pydoc3 | |||
| pydoc3.8 | |||
| pyftmerge | |||
| pyftsubset | |||
| pygmentize | |||
| pyrsa-decrypt | |||
| pyrsa-encrypt | |||
| pyrsa-keygen | |||
| pyrsa-priv2pub | |||
| pyrsa-sign | |||
| pyrsa-verify | |||
| pytest | |||
| py.test | |||
| python | |||
| python3 | |||
| python3.8 | |||
| python3.8-config | |||
| python3-config | |||
| pzstd | |||
| qv_to_bqv.py | |||
| rake | |||
| random_lines.py | |||
| raw2tiff | |||
| raxmlHPC | |||
| raxmlHPC-AVX2 | |||
| raxmlHPC-PTHREADS | |||
| raxmlHPC-PTHREADS-AVX | |||
| raxmlHPC-PTHREADS-AVX2 | |||
| raxmlHPC-PTHREADS-SSE3 | |||
| raxmlHPC-SSE3 | |||
| rdjpgcom | |||
| rdoc | |||
| rdoc2.5 | |||
| recode-sr-latin | |||
| reset | |||
| ri | |||
| ri2.5 | |||
| ripples | |||
| rst2html4.py | |||
| rst2html5.py | |||
| rst2html.py | |||
| rst2latex.py | |||
| rst2man.py | |||
| rst2odt_prepstyles.py | |||
| rst2odt.py | |||
| rst2pseudoxml.py | |||
| rst2s5.py | |||
| rst2xetex.py | |||
| rst2xml.py | |||
| rstpep2html.py | |||
| rsvg-convert | |||
| ruby | |||
| ruby2.5 | |||
| scalar | |||
| sccmap | |||
| sclient | |||
| scorpio | |||
| scp | |||
| sdust | |||
| seqkit | |||
| sfdp | |||
| sftp | |||
| shasum | |||
| shmemc++ | |||
| shmemcc | |||
| shmemCC | |||
| shmemcxx | |||
| shmemfort | |||
| shmemrun | |||
| sim_client | |||
| snakemake | |||
| snakemake-bash-completion | |||
| splain | |||
| sqlite3 | |||
| sqlite3_analyzer | |||
| ssh | |||
| ssh-add | |||
| ssh-agent | |||
| sshd | |||
| ssh-keygen | |||
| ssh-keyscan | |||
| stl2gts | |||
| stone | |||
| stream | |||
| streamzip | |||
| table_add_column.py | |||
| table_filter.py | |||
| tabs | |||
| tabulate | |||
| tclsh | |||
| tclsh8.6 | |||
| tfloc_summary.py | |||
| tic | |||
| tiff2bw | |||
| tiff2pdf | |||
| tiff2ps | |||
| tiff2rgba | |||
| tiffcmp | |||
| tiffcp | |||
| tiffcrop | |||
| tiffdither | |||
| tiffdump | |||
| tiffinfo | |||
| tiffmedian | |||
| tiffset | |||
| tiffsplit | |||
| tificc | |||
| toe | |||
| tput | |||
| tqdm | |||
| transform | |||
| transicc | |||
| tred | |||
| treetime | |||
| tset | |||
| tsv-append | |||
| tsv-filter | |||
| tsv-join | |||
| tsv-pretty | |||
| tsv-sample | |||
| tsv-select | |||
| tsv-split | |||
| tsv-summarize | |||
| tsv-uniq | |||
| ttx | |||
| twopi | |||
| type_constellations.py | |||
| ucsc_gene_table_to_intervals.py | |||
| unflatten | |||
| unix-lpr.sh | |||
| unlzma | |||
| unpigz | |||
| unxz | |||
| unzip | |||
| unzipsfx | |||
| unzstd | |||
| usher | |||
| usher.smk | |||
| uuclient | |||
| vcf-annotate | |||
| vcf-compare | |||
| vcf-concat | |||
| vcf-consensus | |||
| vcf-contrast | |||
| vcf-convert | |||
| vcf-fix-newlines | |||
| vcf-fix-ploidy | |||
| vcf-indel-stats | |||
| vcf-isec | |||
| vcf-merge | |||
| vcf-phased-join | |||
| vcf-query | |||
| vcf-shuffle-cols | |||
| vcf-sort | |||
| vcf-stats | |||
| vcf-subset | |||
| vcftools | |||
| vcf-to-tab | |||
| vcf-tstv | |||
| vcf-validator | |||
| webpinfo | |||
| webpmux | |||
| webpng | |||
| wget | |||
| wheel | |||
| wiggle_to_array_tree.py | |||
| wiggle_to_binned_array.py | |||
| wiggle_to_chr_binned_array.py | |||
| wiggle_to_simple.py | |||
| wish | |||
| wish8.6 | |||
| wrjpgcom | |||
| x86_64-conda_cos6-linux-gnu-ld | |||
| x86_64-conda-linux-gnu-ld | |||
| x86_64-conda-linux-gnu-pkg-config | |||
| xgettext | |||
| xml2-config | |||
| xmlcatalog | |||
| xmllint | |||
| xmlwf | |||
| xsubpp | |||
| xz | |||
| xzcat | |||
| xzcmp | |||
| xzdec | |||
| xzdiff | |||
| xzegrep | |||
| xzfgrep | |||
| xzgrep | |||
| xzless | |||
| xzmore | |||
| zip | |||
| zipcloak | |||
| zipdetails | |||
| zipgrep | |||
| zipinfo | |||
| zipnote | |||
| zipsplit | |||
| zstd | |||
| zstdcat | |||
| zstdgrep | |||
| zstdless | |||
| zstdmt |
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