Augur/Auspice accession and url demo

README.md

$ augur export v2 --tree test.nwk --metadata test.tsv --metadata-columns accession url --output test.json
WARNING: You didn't provide information on who is maintaining this analysis.

Validating produced JSON
Validating schema of 'test.json'...
Validating that the JSON is internally consistent...
Validation of 'test.json' succeeded.

test.json

{
  "version": "v2",
  "meta": {
    "updated": "2025-02-10",
    "colorings": [],
    "filters": [],
    "panels": [
      "tree"
    ]
  },
  "tree": {
    "name": "INT2",
    "node_attrs": {
      "div": 0
    },
    "branch_attrs": {},
    "children": [
      {
        "name": "INT1",
        "node_attrs": {
          "div": 1.0
        },
        "branch_attrs": {},
        "children": [
          {
            "name": "c",
            "node_attrs": {
              "div": 2.0
            },
            "branch_attrs": {}
          },
          {
            "name": "b",
            "node_attrs": {
              "div": 2.0
            },
            "branch_attrs": {}
          }
        ]
      },
      {
        "name": "a",
        "node_attrs": {
          "div": 1.0,
          "accession": "ABC123",
          "url": "https://example.com/#ABC123"
        },
        "branch_attrs": {}
      }
    ]
  }
}

test.nwk

((c:1,b:1)INT1:1,a:1)INT2:1;

test.tsv