Leonardo Castorina universvm

Preface

If you need to leave a long job, such as a program that will run for longer than 5 hrs, or a jupyter notebook you might have noticed errors such as "Broken Pipe" or about your access to AFS being expired.

rm: cannot remove '/afs/inf.ed.ac.uk/user/s20/UUN/.last_login': Permission denied
-bash: /afs/inf.ed.ac.uk/user/s20/UUN/.last_login: Permission denied
-bash: cd: /afs/inf.ed.ac.uk/user/s20/UUN: Permission denied
-bash: /afs/inf.ed.ac.uk/user/s20/UUN/.bash_profile: Permission denied

	import tensorflow as tf
	mnist = tf.keras.datasets.mnist

	(x_train, y_train),(x_test, y_test) = mnist.load_data()
	x_train, x_test = x_train / 255.0, x_test / 255.0

	model = tf.keras.models.Sequential([
	tf.keras.layers.Flatten(input_shape=(28, 28)),
	tf.keras.layers.Dense(512, activation=tf.nn.relu),
	tf.keras.layers.Dropout(0.2),

	import os
	import pandas as pd

	from cv2 import imread, resize, imwrite, IMREAD_GRAYSCALE, INTER_AREA

	# Extension of files needed:
	ext = '.jpg'
	label_ext = '.txt'
	# Directory of interest:
	dir_path = 'dataset'

	# Disable shadow
	set ray_shadows,off

	# Set occupancy as color
	spectrum q, blue_yellow

	# Set B-factor as thickness
	show cartoon
	cartoon putty
	unset cartoon_smooth_loops

	Acta Biológica Colombiana
	Alces
	American Journal of Physical Anthropology
	The American Naturalist
	Annual Review of Physiology
	BioEssays
	Biologia
	The Biological Bulletin
	Biological Communications
	Biological Reviews

	# Written by Rokas Petrenas (https://github.com/rokaske199)
	from benchmark import get_cath
	from pathlib import Path
	import json

	PATH_TO_PDB=Path('/scratch/datasets/pdb/')
	cath_location = "cath-domain-description-file.txt"
	cath_df = get_cath.read_data(cath_location)
	#select only monomers
	new_df=get_cath.filter_with_user_list(cath_df,"/home/s1706179/project/sequence-recovery-benchmark/monomers_af2.txt")

	4le7A
	4ozwA
	3e8tA
	3zh4A
	1o7iA
	6baqA
	3q1nA
	1x8qA
	3klkA
	5b1rA