numenta/nupic-legacy#751 build output

numenta-nupic-pull-751-build-further.md

Clone and setup

utensilsong@vm-1:~/projects/DavidRagazzi$ git clone https://github.com/DavidRagazzi/nupic.git

utensilsong@vm-1:~/projects/DavidRagazzi$ cd nupic                                                                                                                                                
utensilsong@vm-1:~/projects/DavidRagazzi/nupic$ export REPOSITORY=`pwd`

Stage CMake

utensilsong@vm-1:~/projects/DavidRagazzi/nupic$ mkdir $REPOSITORY/build_system
utensilsong@vm-1:~/projects/DavidRagazzi/nupic$ cd $REPOSITORY/build_system
utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ 
utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ cmake $REPOSITORY

...omitting lots of output...

-- Environment variables:
--   PATH = /home/utensilsong/projects/DavidRagazzi/nupic/build/release/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
--   PYTHONPATH = /home/utensilsong/projects/DavidRagazzi/nupic/build/release/lib/python2.7/site-packages
--   NUPIC = /home/utensilsong/projects/DavidRagazzi/nupic
--   LD_LIBRARY_PATH = /home/utensilsong/projects/DavidRagazzi/nupic/build/temp/lib:
--   DYLD_LIBRARY_PATH = /home/utensilsong/projects/DavidRagazzi/nupic/build/release/lib:
--   NTA = /home/utensilsong/projects/DavidRagazzi/nupic/build/release
--   NTA_ROOTDIR = /home/utensilsong/projects/DavidRagazzi/nupic/build/release
--   NTA_DATA_PATH = /home/utensilsong/projects/DavidRagazzi/nupic/build/release/share/prediction/data
--   NTAX_DEVELOPER_BUILD = 

...omitting lots of output...

[ 63%] Built target nupic_core
Scanning dependencies of target htmtest
[ 63%] Scanning dependencies of target testeverything
Building CXX object CMakeFiles/htmtest.dir/test/htmtest/htmtest.cpp.o

...omitting lots of output...

-- Build files have been written to: /home/utensilsong/projects/DavidRagazzi/nupic/build_system

Stage make

utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ cd $REPOSITORY/build_system
utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ 
utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ make -j3

...omitting lots of output...

[100%] Building CXX object CMakeFiles/htmtest.dir/tests/htmtest/htmtest.cpp.o
Linking CXX executable ../build/release/bin/htmtest
[100%] Built target htmtest

Manual sets enviroment variable

utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ 
utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ echo $NTA
 
utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ echo $NUPIC                                                                                                                            
utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ echo $REPOSITORY                                                                                                                       
/home/utensilsong/projects/DavidRagazzi/nupic
utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ export NUPIC=$REPOSITORY 
utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ export NTA=$NUPIC/build/release

Stage htmtest

utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build_system$ cd $NTA/bin
utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build/release/bin$ ./htmtest                                                                                                                         
Creating network...
Region count is 0
Adding a PyNode region...
ERROR:  Unable to find the pynode dynamic library because neither NTA_ROOTDIR nor PYTHONPATH is set [/home/utensilsong/projects/DavidRagazzi/nupic/nta/src/main/engine/RegionImplFactory.cpp line 80
]
Exception: Unable to find the pynode dynamic library because neither NTA_ROOTDIR nor PYTHONPATH is set at: /home/utensilsong/projects/DavidRagazzi/nupic/nta/src/main/engine/RegionImplFactory.cpp:8
0

Stage testeverything

utensilsong@vm-1:~/projects/DavidRagazzi/nupic/build/release/bin$ ./testeverything                                                                                                                  
bash: ./testeverything: No such file or directory

Stage run_test.sh

utensilsong@vm-1:~/projects/DavidRagazzi/nupic$ $NUPIC/run_tests.sh --all
/home/utensilsong/projects/DavidRagazzi/nupic/run_tests.sh: 2: /home/utensilsong/projects/DavidRagazzi/nupic/run_tests.sh: actual_dir: not found
======================================================================================= test session starts ========================================================================================
platform linux2 -- Python 2.7.4 -- pytest-2.4.2 -- /usr/bin/python
plugins: cov, xdist
collecting 3 items / 1 errors
============================================================================================== ERRORS ==============================================================================================
__________________________________________________________ ERROR collecting tests/integration/py2/nupic/algorithms/tp_likelihood_test.py ___________________________________________________________
tests/integration/py2/nupic/algorithms/tp_likelihood_test.py:52: in <module>
>   from nupic.research.TP import TP
E   ImportError: No module named nupic.research.TP
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: stopping after 1 failures !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
===================================================================================== 1 error in 1.27 seconds ======================================================================================
utensilsong@vm-1:~/projects/DavidRagazzi/nupic$  

numenta-nupic-pull-751-build.md

Steps to manually update submodule nupuc.core to HEAD

git clone https://github.com/DavidRagazzi/nupic.git
cd nupic
export REPOSITORY=`pwd`

cd $REPOSITORY
git submodule foreach git submodule update --init
git submodule foreach git pull origin master

Comment out submodule update in CMakeLists.txt .

mkdir $REPOSITORY/build_system
cd $REPOSITORY/build_system
cmake $REPOSITORY

Now cmake runs fine.

Make output

utensilsong@vm-1:~/projects/nupic/build_system$ make -j3
Scanning dependencies of target support
[  6%] [ 12%] [ 18%] Building CXX object CMakeFiles/support.dir/lang/py/support/NumpyVector.cpp.o
Building CXX object CMakeFiles/support.dir/lang/py/support/PythonStream.cpp.o
Building CXX object CMakeFiles/support.dir/lang/py/support/PyArray.cpp.o
In file included from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:15,
                 from /home/utensilsong/projects/nupic/lang/py/support/NumpyVector.cpp:33:
/usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_
VERSION" [-Wcpp]In file included from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:15,
                 from /home/utensilsong/projects/nupic/lang/py/support/PyArray.cpp:33:
/usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_
VERSION" [-Wcpp]
 
[ 25%] Building CXX object CMakeFiles/support.dir/lang/py/support/PyHelpers.cpp.o
Linking CXX static library ../build/temp/lib/libsupport.a
[ 25%] Built target support
[ 31%] Swig source
[ 37%] Building CXX object CMakeFiles/_algorithms.dir/build/temp/py/bindings/algorithms/algorithms_pyPYTHON_wrap.cxx.o
In file included from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:15,
                 from /home/utensilsong/projects/nupic/build/temp/py/bindings/algorithms/algorithms_pyPYTHON_wrap.cxx:3777:
/usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_
VERSION" [-Wcpp]
Linking CXX shared module ../build/release/lib/python2.7/site-packages/nupic/bindings/_algorithms.so
[ 37%] Built target _algorithms
[ 43%] Swig source
[ 50%] Building CXX object CMakeFiles/_engine_internal.dir/build/temp/lang/py/bindings/engine_internal/engine_internal_pyPYTHON_wrap.cxx.o
In file included from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:15,
                 from /home/utensilsong/projects/nupic/build/temp/lang/py/bindings/engine_internal/engine_internal_pyPYTHON_wrap.cxx:4774:
/usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_
VERSION" [-Wcpp]
Linking CXX shared module ../build/release/lib/python2.7/site-packages/nupic/bindings/_engine_internal.so
[ 50%] Built target _engine_internal
[ 56%] Swig source
[ 62%] Building CXX object CMakeFiles/_iorange.dir/build/temp/py/bindings/iorange/iorange_pyPYTHON_wrap.cxx.o
In file included from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:15,
                 from /home/utensilsong/projects/nupic/build/temp/py/bindings/iorange/iorange_pyPYTHON_wrap.cxx:2716:
/usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_
VERSION" [-Wcpp]
Linking CXX shared module ../build/release/lib/python2.7/site-packages/nupic/bindings/_iorange.so
[ 62%] Built target _iorange
[ 68%] Swig source
Scanning dependencies of target _math
[ 68%] Swig source
[ 75%] Building CXX object CMakeFiles/_math.dir/build/temp/py/bindings/math/math_pyPYTHON_wrap.cxx.o
In file included from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:15,
                 from /home/utensilsong/projects/nupic/build/temp/py/bindings/math/math_pyPYTHON_wrap.cxx:2749:
/usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_
VERSION" [-Wcpp]
[ 81%] Building CXX object CMakeFiles/_math.dir/py/bindings/math/PySparseTensor.cpp.o
In file included from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:15,
                 from /home/utensilsong/projects/nupic/lang/py/support/NumpyVector.hpp:34,
                 from /home/utensilsong/projects/nupic/py/bindings/math/PySparseTensor.cpp:28:
/usr/local/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_
VERSION" [-Wcpp]
Linking CXX shared module ../build/release/lib/python2.7/site-packages/nupic/bindings/_math.so
[ 81%] Built target _math
Linking CXX shared library ../build/release/lib/libcpp_region.so
[ 93%] Built target cpp_region
Scanning dependencies of target htmtest
[100%] Building CXX object CMakeFiles/htmtest.dir/tests/htmtest/htmtest.cpp.o
/home/utensilsong/projects/nupic/tests/htmtest/htmtest.cpp: In function ‘int realmain(bool)’:
/home/utensilsong/projects/nupic/tests/htmtest/htmtest.cpp:496:9: warning: unused variable ‘val’ [-Wunused-variable]
Linking CXX executable ../build/release/bin/htmtest
[100%] Built target htmtest

Tests ouput

Tests currently fails.