Created
October 22, 2021 17:29
-
-
Save vaclavcadek/fd39f92e9522547aedfd6ba0ca7e04d1 to your computer and use it in GitHub Desktop.
A not so successful attempt to perform single channel ICA using Wavelet Transform.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
import itertools | |
from scipy import signal | |
import pywt | |
import numpy as np | |
import matplotlib.pyplot as plt | |
from sklearn.decomposition import FastICA | |
# ############################################################################# | |
# Generate sample data | |
np.random.seed(0) | |
n_samples = 2_000 | |
time = np.linspace(0, 8, n_samples) | |
s1 = np.sin(2 * time) # Signal 1 : sinusoidal signal | |
s2 = signal.sawtooth(2 * np.pi * time) # Signal 2 : sinusoidal signal | |
# Mix data as sum not through mixing matrix - is it valid? | |
S = s1 + s2 | |
coeffs = pywt.swt(S, 'db4', level=4) | |
decomposition = tuple(a for a, d in coeffs) | |
# X = np.c_[S, decomposition] | |
X = np.c_[tuple([decomposition[0], decomposition[1]])] | |
# Compute ICA | |
ica = FastICA(n_components=2, whiten=False) | |
S_ = ica.fit_transform(X) # Reconstruct signals | |
A_ = ica.mixing_ # Get estimated mixing matrix | |
# We can `prove` that the ICA model applies by reverting the unmixing. | |
# assert np.allclose(X, np.dot(S_, A_.T) + ica.mean_) | |
# ############################################################################# | |
# Plot results | |
plt.figure() | |
recovered_signals = pywt.iswt([S_], "db4") | |
models = [S[:, np.newaxis], np.c_[s1, s2], recovered_signals, recovered_signals.sum(axis=1)[:, np.newaxis]] | |
names = [ | |
'Observations (mixed signal)', | |
'True Sources', | |
'ICA recovered sources', | |
'ICA recovered (mixed signal)' | |
] | |
colors = ['red', 'steelblue'] | |
for ii, (model, name) in enumerate(zip(models, names), 1): | |
plt.subplot(4, 1, ii) | |
plt.title(name) | |
for sig, color in zip(model.T, colors): | |
plt.plot(sig, color=color) | |
plt.tight_layout() | |
plt.show() |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment