victorlin

for f in *.jpg; do
    date="${f:0:10}"
    if ! [ -d "${date}" ]; then
        echo "creating folder ${date}"
        mkdir "${date}"
    fi
    echo "moving ${f}"
    mv ${f} ${date}
done

victorlin

{
    "properties": {
        "sra": "ERR2756788",
        "genome": "cov3ma",
        "date": "200607-01:47"
    },
    "families": [
        {
            "family": "AMR",
            "score": "100",

victorlin

A manual approach to git rebase that puts current branch commits over new commits in other branch.

git branch -m feature-branch tmp
git checkout dev
git checkout -b feature-branch
git cherry-pick <earliest-sha1>^...<latest-sha1>

git branch -D tmp

victorlin

victorlin

Overview

Script to convert and downsize RAW images. Good for web uploading.

1. Convert all .CR2 files (RAW) to jpg
2. Downsize image dimensions by 25%
3. Move to new directory jpg

Quickstart

victorlin

import urllib
import datetime
import time
import string

url = "https://www.facebook.com/theKLIQUE/videos/1079723095393383/"


def printStuff():
    fileObj = urllib.urlopen(url)

victorlin

bam2bed_all.sh

find

• man find
• This command is used to search for files and/or subdirectories in a directory.
• In this script, find is used to search for immediate subdirectories matching the regular expression R*.dm6. The output of find is a list of each match. These subdirectories are passed through a pipe into a push/pop loop.

pushd and popd

victorlin

"""
Script to crete TSV file containing title/artist/__/BPM/key info

playlist_export_file
    iTunes export of playlist (CSV)
auto_fpath
    filepath of binary plist file generated by djay.app
"""

import csv

victorlin

1. Set your name and email (make sure the email is tied to your GitHub account).

   git config --global user.name <YOUR_NAME>

   git config --global user.email <YOUR_EMAIL>

• To check global variables, use git config -l

2. Adding your HPC user SSH key to the ssh-agent