Created
March 8, 2025 23:22
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pull lung samples from atlas
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| library(cellNexus) | |
| library(dplyr) | |
| md = get_metadata() | |
| dd = md |> filter(disease=="normal", tissue %in% c("lung", "lung_parenchyma", "lung_epithelium")) | |
| lungsce1M = get_single_cell_experiment(dd) | |
| HDF5Array::setAutoBlockSize(size = 1e+09) | |
| lungsce1M |> | |
| HDF5Array::saveHDF5SummarizedExperiment( | |
| "lungSCEnorm", | |
| replace = TRUE, | |
| as.sparse = TRUE, | |
| verbose = TRUE | |
| ) |
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