Created
December 14, 2024 13:47
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learning how to use click, too much rerendering
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library(shiny) | |
library(SpatialData) | |
library(SpatialData.plot) | |
library(SpatialData.data) | |
library(ggmap) | |
library(ggplot2) | |
library(sf) | |
if (!exists("brdat")) brdat = Breast2fov_10x() | |
xs = NULL | |
ys = NULL | |
ui = fluidPage( | |
sidebarLayout( | |
sidebarPanel( | |
helpText("region selector app for Janesick Xenium Rep 1 example"), | |
helpText("select center of circle"), | |
verbatimTextOutput("xdat"), | |
actionButton("usecent", "use"), width=2 | |
), | |
mainPanel( | |
tabsetPanel( | |
tabPanel("cells", | |
plotOutput("cells", width="800px", height="800px", click="plot_click"), | |
), | |
tabPanel("cropped", | |
plotOutput("crop", width="800px", height="800px"), | |
verbatimTextOutput("ans") | |
) | |
) | |
) | |
) | |
) | |
server = function(input, output, session) { | |
brsh = shape(brdat) | |
# some points to form a subregion | |
pick = structure(list(x = c(355.185319678255, 353.624236083554, 510.140679646861, | |
496.285253053229, 355.185319678255), y = c(-471.421489018199, | |
-591.83220661942, -601.010859954238, -467.21109758021, -471.421489018199 | |
)), row.names = c(NA, -5L), class = "data.frame") | |
pick_poly = st_polygon(list(abs(data.matrix(pick)))) | |
brshpoly = st_as_sf(brsh@data) | |
trim = st_intersects(brshpoly, pick_poly, sparse=FALSE) | |
sh251 = brshpoly[i=which(trim[,1]),] | |
picked = ShapeFrame(as.data.frame(sh251)) | |
if (!("pick" %in% shapeNames(brdat))) shapes(brdat)$pick = picked | |
output$crop = renderPlot({ | |
plotSpatialData() + plotShape(brdat, "pick", c="black") | |
}) | |
output$cells = renderPlot({ | |
input$plot_click | |
p1 = plotSpatialData() + plotShape(brdat, c="black") + geom_path(data=pick, aes(x=x,y=abs(y)), colour="red", | |
linewidth=3) # full dataset | |
if (length(xs)>1) { | |
nd = data.frame(x=xs, y=ys) | |
p1 = p1+geom_path(data=nd, aes(x=x,y=y), colour="red", linewidth=3) | |
} | |
p1 | |
}) | |
output$xdat <- renderPrint({ | |
xs <<- c(xs, input$plot_click$x) | |
ys <<- c(ys, input$plot_click$y) | |
cat(xs) | |
}) | |
} | |
runApp(list(ui=ui, server=server)) |
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