Vince Carey vjcitn

Professor of Medicine, Channing Division of Network Medicine, Mass General Brigham, Harvard Medical School.

vjcitn / omicidx-beta-graphql-intro.ipynb

Created March 21, 2019 11:00 — forked from seandavi/omicidx-beta-graphql-intro.ipynb

Quick introduction to the OmicIDX GraphQL API

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vjcitn / Dockerfile

Created March 21, 2019 11:00 — forked from seandavi/Dockerfile

Dockerfile for blog post on using GCR. Builds SRA-toolkit with dbGaP access as an example

	FROM ubuntu:18.04

	RUN apt-get update
	RUN apt-get install -y wget

	# We do things this way to keep the docker image
	# size down. See https://nickjanetakis.com/blog/docker-tip-3-chain-your-docker-run-instructions-to-shrink-your-images
	RUN wget http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.9.2/sratoolkit.2.9.2-ubuntu64.tar.gz \
	&& tar -xvzf sratoolkit.2.9.2-ubuntu64.tar.gz \
	&& rm sratoolkit.2.9.2-ubuntu64.tar.gz