biophycs of Allen Institute DB model 472363762

472363762biophys.hoc

// is the name L5PCbiophys fine?
// How should we reference the cell? $o1?
// Should we use $o1.distribute_channels?

begintemplate L5PCbiophys
public biophys

proc biophys() {
	forsec $o1.all {
	  insert pas
		Ra = 138.28
		e_pas = -92.4991149902
	}

  forsec $o1.axonal {
    cm = 1.0
    g_pas = 0.000457387600765
  }

  forsec $o1.apical {
    cm = 2.12
    g_pas = 9.58618554762e-05
  }

  forsec $o1.basal {
    cm = 2.12
    g_pas = 3.23932732744e-06
  }

  forsec $o1.somatic {
    cm = 1.0
    ena = 53.0
    ek = -107.0
    g_pas = 5.71881e-06

    insert CaDynamics
      gamma_CaDynamics = 0.00125108
      decay_CaDynamics = 717.917
    insert Ca_HVA
      gbar_Ca_HVA = 0.000535997
    insert Ca_LVA
      gbar_Ca_LVA = 0.00700613
    insert Ih
      gbar_Ih = 4.12226e-05
    insert Im
      gbar_Im = 0.00120212
    insert K_P
      gbar_K_P = 0.0517584
    insert K_T
      gbar_K_T = 0.000731607
    insert Kv3_1
      gbar_Kv3_1 = 0.0572648
    insert NaTs
      gbar_NaTs = 0.98229
    insert Nap
      gbar_Nap = 0.000209349
    insert SK
      gbar_SK = 0.00019222
 }
}

endtemplate L5PCbiophys