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#!/bin/sh | |
echo "IMPORTANT! INSTALL_DIR arg must be an absolute path!" | |
set -e | |
SRC_DIR=$1 | |
INSTALL_DIR=$2 | |
if [ ! -e ${INSTALL_DIR}/.install_finished ] | |
then | |
echo 'Neuron was not fully installed in previous build, installing ...' | |
mkdir -p ${SRC_DIR} | |
cd ${SRC_DIR} | |
echo "Downloading IV ..." | |
rm -rf iv | |
git clone --depth 1 https://github.com/neuronsimulator/iv.git >download.log 2>&1 | |
cd iv | |
echo "Preparing IV ..." | |
./build.sh >prepare.log 2>&1 | |
echo "Configuring IV ..." | |
./configure --prefix=${INSTALL_DIR}/iv >configure.log 2>&1 | |
echo "Building IV ..." | |
make -j4 >make.log 2>&1 | |
echo "Installing IV ..." | |
make -j4 install >install.log 2>&1 | |
cd .. | |
echo "Downloading NEURON ..." | |
rm -rf nrn | |
git clone --depth 1 https://github.com/neuronsimulator/nrn.git >download.log 2>&1 | |
cd nrn | |
echo "Preparing NEURON ..." | |
./build.sh >prepare.log 2>&1 | |
echo "Configuring NEURON ..." | |
./configure --prefix=${INSTALL_DIR}/nrn --with-iv=${INSTALL_DIR}/iv --with-nrnpython=python --disable-rx3d >configure.log 2>&1 | |
echo "Building NEURON ..." | |
make -j4 >make.log 2>&1 | |
echo "Installing NEURON ..." | |
make -j4 install >install.log 2>&1 | |
export PATH="${INSTALL_DIR}/nrn/x86_64/bin":${PATH} | |
export PYTHONPATH="${INSTALL_DIR}/nrn/lib/python":${PYTHONPATH} | |
cd src/nrnpython | |
python setup.py install | |
cd ../../ | |
echo "Testing NEURON import ...." | |
python -c 'import neuron' >testimport.log 2>&1 | |
touch -f ${INSTALL_DIR}/.install_finished | |
echo "NEURON successfully installed" | |
else | |
echo 'Neuron was successfully installed in previous build, not rebuilding' | |
fi | |
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