Created
November 1, 2019 15:17
-
-
Save votti/f99d7a26f4d0e0badb74732414dcaac9 to your computer and use it in GitHub Desktop.
Working Cellprofiler 3.1.8 conda environment
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # run: conda env create -f cp318_environment.yml | |
| # run: conda env update -f cp318_environment.yml | |
| # activate: conda activate cellprofiler318 | |
| name: cellprofiler318 | |
| # in order of priority: highest (top) to lowest (bottom) | |
| channels: | |
| - anaconda | |
| - goodman # mysql-python for mac | |
| - bioconda | |
| - cyclus # java-jdk for windows | |
| - conda-forge # libxml2 for windows | |
| - daf | |
| dependencies: | |
| - appdirs | |
| - boto3 | |
| - cython | |
| - h5py | |
| - ipywidgets | |
| - java-jdk | |
| - joblib | |
| - jupyter | |
| - libtiff | |
| - libxml2 | |
| - libxslt | |
| - lxml | |
| - packaging | |
| - pillow | |
| - pip | |
| - python=2 | |
| - pyzmq=15.3.0 | |
| - mahotas | |
| - matplotlib!=2.1.0,>2.0.0 | |
| - mysqlclient | |
| - numpy | |
| - raven | |
| - requests | |
| - scikit-image>=0.13 | |
| - scikit-learn | |
| - scipy | |
| - sphinx | |
| - tifffile | |
| - wxpython=3.0.2.0 | |
| - pip: | |
| - cellh5 | |
| - centrosome | |
| - inflect | |
| - prokaryote==2.4.0 | |
| - javabridge==1.0.15 | |
| - python-bioformats==1.4.0 | |
| - git+https://github.com/CellProfiler/[email protected] |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment