version updater for biom-format

version_update.sh

#!/bin/bash

OLD_VERSION=$1
NEW_VERSION=$2

cd trunk/examples
sed -ie "s/Biological Observation Matrix $OLD_VERSION/Biological Observation Matrix $NEW_VERSION/" *.biom

cd ../scripts
sed -ie "s/^__version__ = \"$OLD_VERSION\"/__version__ = \"$NEW_VERSION\"/" *.py

cd ../doc
sed -ie "s/^version = \"$OLD_VERSION\"/version = \"$NEW_VERSION\"/" conf.py
sed -ie "s/^release = \"$OLD_VERSION\"/version = \"$NEW_VERSION\"/" conf.py

cd documentation
sed -ie "s/\"format\": \"Biological Observation Matrix $OLD_VERSION\",/\"format\": \"Biological Observation Matrix $NEW_VERSION\",/" biom_format.rst

cd ../../python-code/biom
sed -ie "s/^__version__ = \"$OLD_VERSION\"/__version__ = \"$NEW_VERSION\"/" *.py

cd ../tests
sed -ie "s/^__version__ = \"$OLD_VERSION\"/__version__ = \"$NEW_VERSION\"/" *.py