Created
October 20, 2017 15:38
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| [fg_atlas@ebi-cli-003 E-MTAB-5214]$ mv gtex.dom.trans.tsv E-MTAB-5214-transcripts-tpms.tsv.undecorated | |
| [fg_atlas@ebi-cli-003 E-MTAB-5214]$ $projectRoot/irap/gxa_summarizeExpressionUnits.pl \ | |
| > > --quantile-normalize --aggregate-technical-replicates \ | |
| > > --configuration ${expTargetDir}/${expAcc}-configuration.xml \ | |
| > > --input ${expTargetDir}/${expAcc}-transcripts-tpms.tsv.undecorated \ | |
| > > --output ${expTargetDir}^C{expAcc}-transcripts-tpms.tsv.undecorated.aggregated | |
| [fg_atlas@ebi-cli-003 E-MTAB-5214]$ $projectRoot/irap/gxa_summarizeExpressionUnits.pl --quantile-normalize --aggregate-technical-replicates --configuration ${expTargetDir}/${expAcc}-configuration.xml --input ${expTargetDir}/${expAcc}-transcripts-tpms.tsv.undecorated --output ${expTargetDir}/${expAcc}-transcripts-tpms.tsv.undecorated.aggregated | |
| INFO - Reading XML config from /nfs/public/ro/fg/atlas/experiments_test/E-MTAB-5214/E-MTAB-5214-configuration.xml ... | |
| INFO - Successfully read XML config. | |
| INFO - Reading matrix from /nfs/public/ro/fg/atlas/experiments_test/E-MTAB-5214/E-MTAB-5214-transcripts-tpms.tsv.undecorated ... | |
| WARN - SRR660030 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR660030 successfully removed from FPKMs matrix. | |
| WARN - SRR660127 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR660127 successfully removed from FPKMs matrix. | |
| WARN - SRR659863 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR659863 successfully removed from FPKMs matrix. | |
| WARN - SRR663741 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR663741 successfully removed from FPKMs matrix. | |
| WARN - SRR1098636 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1098636 successfully removed from FPKMs matrix. | |
| WARN - SRR1310959 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1310959 successfully removed from FPKMs matrix. | |
| WARN - SRR1305159 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305159 successfully removed from FPKMs matrix. | |
| WARN - SRR1306519 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306519 successfully removed from FPKMs matrix. | |
| WARN - SRR1305425 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305425 successfully removed from FPKMs matrix. | |
| WARN - SRR1305405 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305405 successfully removed from FPKMs matrix. | |
| WARN - SRR1307223 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307223 successfully removed from FPKMs matrix. | |
| WARN - SRR1308310 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308310 successfully removed from FPKMs matrix. | |
| WARN - SRR1333609 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1333609 successfully removed from FPKMs matrix. | |
| WARN - SRR1338450 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1338450 successfully removed from FPKMs matrix. | |
| WARN - SRR1308526 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308526 successfully removed from FPKMs matrix. | |
| WARN - SRR1416933 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1416933 successfully removed from FPKMs matrix. | |
| WARN - SRR1444662 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1444662 successfully removed from FPKMs matrix. | |
| WARN - SRR1446132 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1446132 successfully removed from FPKMs matrix. | |
| WARN - SRR1469036 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1469036 successfully removed from FPKMs matrix. | |
| WARN - SRR1471612 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1471612 successfully removed from FPKMs matrix. | |
| WARN - SRR627443 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR627443 successfully removed from FPKMs matrix. | |
| WARN - SRR807463 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR807463 successfully removed from FPKMs matrix. | |
| WARN - SRR824039 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR824039 successfully removed from FPKMs matrix. | |
| WARN - SRR823967 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR823967 successfully removed from FPKMs matrix. | |
| WARN - SRR1078924 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1078924 successfully removed from FPKMs matrix. | |
| WARN - SRR807438 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR807438 successfully removed from FPKMs matrix. | |
| WARN - SRR1122913 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1122913 successfully removed from FPKMs matrix. | |
| WARN - SRR1140510 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1140510 successfully removed from FPKMs matrix. | |
| WARN - SRR1307859 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307859 successfully removed from FPKMs matrix. | |
| WARN - SRR1307889 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307889 successfully removed from FPKMs matrix. | |
| WARN - SRR1307792 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307792 successfully removed from FPKMs matrix. | |
| WARN - SRR1305009 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305009 successfully removed from FPKMs matrix. | |
| WARN - SRR1306848 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306848 successfully removed from FPKMs matrix. | |
| WARN - SRR1305831 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305831 successfully removed from FPKMs matrix. | |
| WARN - SRR1352481 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1352481 successfully removed from FPKMs matrix. | |
| WARN - SRR1361243 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1361243 successfully removed from FPKMs matrix. | |
| WARN - SRR1361219 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1361219 successfully removed from FPKMs matrix. | |
| WARN - SRR1370764 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1370764 successfully removed from FPKMs matrix. | |
| WARN - SRR1376196 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1376196 successfully removed from FPKMs matrix. | |
| WARN - SRR1395935 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1395935 successfully removed from FPKMs matrix. | |
| WARN - SRR1405904 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1405904 successfully removed from FPKMs matrix. | |
| WARN - SRR1458769 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1458769 successfully removed from FPKMs matrix. | |
| WARN - SRR1453362 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1453362 successfully removed from FPKMs matrix. | |
| WARN - SRR607562 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR607562 successfully removed from FPKMs matrix. | |
| WARN - SRR656131 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR656131 successfully removed from FPKMs matrix. | |
| WARN - SRR1308574 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308574 successfully removed from FPKMs matrix. | |
| WARN - SRR1307123 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307123 successfully removed from FPKMs matrix. | |
| WARN - SRR1305971 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305971 successfully removed from FPKMs matrix. | |
| WARN - SRR1308153 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308153 successfully removed from FPKMs matrix. | |
| WARN - SRR1306769 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306769 successfully removed from FPKMs matrix. | |
| WARN - SRR1407583 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1407583 successfully removed from FPKMs matrix. | |
| WARN - SRR1439763 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1439763 successfully removed from FPKMs matrix. | |
| WARN - SRR1467988 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1467988 successfully removed from FPKMs matrix. | |
| WARN - SRR1465959 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1465959 successfully removed from FPKMs matrix. | |
| WARN - SRR614371 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR614371 successfully removed from FPKMs matrix. | |
| WARN - SRR823991 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR823991 successfully removed from FPKMs matrix. | |
| WARN - SRR1094580 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1094580 successfully removed from FPKMs matrix. | |
| WARN - SRR1307965 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307965 successfully removed from FPKMs matrix. | |
| WARN - SRR1305191 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305191 successfully removed from FPKMs matrix. | |
| WARN - SRR1304987 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1304987 successfully removed from FPKMs matrix. | |
| WARN - SRR1305457 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305457 successfully removed from FPKMs matrix. | |
| WARN - SRR1305105 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305105 successfully removed from FPKMs matrix. | |
| WARN - SRR1305651 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305651 successfully removed from FPKMs matrix. | |
| WARN - SRR1306359 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306359 successfully removed from FPKMs matrix. | |
| WARN - SRR1321267 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1321267 successfully removed from FPKMs matrix. | |
| WARN - SRR1306617 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306617 successfully removed from FPKMs matrix. | |
| WARN - SRR1308969 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308969 successfully removed from FPKMs matrix. | |
| WARN - SRR1329704 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1329704 successfully removed from FPKMs matrix. | |
| WARN - SRR1389262 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1389262 successfully removed from FPKMs matrix. | |
| WARN - SRR1391945 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1391945 successfully removed from FPKMs matrix. | |
| WARN - SRR1405266 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1405266 successfully removed from FPKMs matrix. | |
| WARN - SRR1413998 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1413998 successfully removed from FPKMs matrix. | |
| WARN - SRR1445449 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1445449 successfully removed from FPKMs matrix. | |
| WARN - SRR1489220 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1489220 successfully removed from FPKMs matrix. | |
| WARN - SRR1307661 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307661 successfully removed from FPKMs matrix. | |
| WARN - SRR1305029 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305029 successfully removed from FPKMs matrix. | |
| WARN - SRR1306737 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306737 successfully removed from FPKMs matrix. | |
| WARN - SRR1306227 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306227 successfully removed from FPKMs matrix. | |
| WARN - SRR1306551 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306551 successfully removed from FPKMs matrix. | |
| WARN - SRR1305787 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305787 successfully removed from FPKMs matrix. | |
| WARN - SRR1307407 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307407 successfully removed from FPKMs matrix. | |
| WARN - SRR1306583 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306583 successfully removed from FPKMs matrix. | |
| WARN - SRR1380740 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1380740 successfully removed from FPKMs matrix. | |
| WARN - SRR1459078 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1459078 successfully removed from FPKMs matrix. | |
| WARN - SRR598749 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR598749 successfully removed from FPKMs matrix. | |
| WARN - SRR613162 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR613162 successfully removed from FPKMs matrix. | |
| WARN - SRR659995 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR659995 successfully removed from FPKMs matrix. | |
| WARN - SRR1076608 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1076608 successfully removed from FPKMs matrix. | |
| WARN - SRR1308844 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308844 successfully removed from FPKMs matrix. | |
| WARN - SRR1306683 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306683 successfully removed from FPKMs matrix. | |
| WARN - SRR1305673 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305673 successfully removed from FPKMs matrix. | |
| WARN - SRR1308939 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308939 successfully removed from FPKMs matrix. | |
| WARN - SRR1305713 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305713 successfully removed from FPKMs matrix. | |
| WARN - SRR1308474 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308474 successfully removed from FPKMs matrix. | |
| WARN - SRR1305809 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305809 successfully removed from FPKMs matrix. | |
| WARN - SRR1306703 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306703 successfully removed from FPKMs matrix. | |
| WARN - SRR1328057 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1328057 successfully removed from FPKMs matrix. | |
| WARN - SRR1354384 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1354384 successfully removed from FPKMs matrix. | |
| WARN - SRR1395462 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1395462 successfully removed from FPKMs matrix. | |
| WARN - SRR1469517 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1469517 successfully removed from FPKMs matrix. | |
| WARN - SRR612467 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR612467 successfully removed from FPKMs matrix. | |
| WARN - SRR657961 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR657961 successfully removed from FPKMs matrix. | |
| WARN - SRR1307738 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307738 successfully removed from FPKMs matrix. | |
| WARN - SRR1307754 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307754 successfully removed from FPKMs matrix. | |
| WARN - SRR1305083 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305083 successfully removed from FPKMs matrix. | |
| WARN - SRR1306974 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306974 successfully removed from FPKMs matrix. | |
| WARN - SRR1307159 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307159 successfully removed from FPKMs matrix. | |
| WARN - SRR1307290 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307290 successfully removed from FPKMs matrix. | |
| WARN - SRR1325690 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1325690 successfully removed from FPKMs matrix. | |
| WARN - SRR1338241 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1338241 successfully removed from FPKMs matrix. | |
| WARN - SRR1348973 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1348973 successfully removed from FPKMs matrix. | |
| WARN - SRR1383652 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1383652 successfully removed from FPKMs matrix. | |
| WARN - SRR1387355 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1387355 successfully removed from FPKMs matrix. | |
| WARN - SRR1471135 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1471135 successfully removed from FPKMs matrix. | |
| WARN - SRR615826 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR615826 successfully removed from FPKMs matrix. | |
| WARN - SRR1307919 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307919 successfully removed from FPKMs matrix. | |
| WARN - SRR1310396 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1310396 successfully removed from FPKMs matrix. | |
| WARN - SRR1122940 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1122940 successfully removed from FPKMs matrix. | |
| WARN - SRR1306649 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306649 successfully removed from FPKMs matrix. | |
| WARN - SRR1315209 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1315209 successfully removed from FPKMs matrix. | |
| WARN - SRR1306163 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306163 successfully removed from FPKMs matrix. | |
| WARN - SRR1307551 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307551 successfully removed from FPKMs matrix. | |
| WARN - SRR1325138 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1325138 successfully removed from FPKMs matrix. | |
| WARN - SRR1305127 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305127 successfully removed from FPKMs matrix. | |
| WARN - SRR1340157 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1340157 successfully removed from FPKMs matrix. | |
| WARN - SRR1397580 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1397580 successfully removed from FPKMs matrix. | |
| WARN - SRR1417467 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1417467 successfully removed from FPKMs matrix. | |
| WARN - SRR1468876 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1468876 successfully removed from FPKMs matrix. | |
| WARN - SRR1468072 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1468072 successfully removed from FPKMs matrix. | |
| WARN - SRR1490337 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1490337 successfully removed from FPKMs matrix. | |
| WARN - SRR598042 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR598042 successfully removed from FPKMs matrix. | |
| WARN - SRR1070573 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1070573 successfully removed from FPKMs matrix. | |
| WARN - SRR824015 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR824015 successfully removed from FPKMs matrix. | |
| WARN - SRR1305745 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305745 successfully removed from FPKMs matrix. | |
| WARN - SRR1308054 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308054 successfully removed from FPKMs matrix. | |
| WARN - SRR1305533 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305533 successfully removed from FPKMs matrix. | |
| WARN - SRR1305565 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305565 successfully removed from FPKMs matrix. | |
| WARN - SRR1305765 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305765 successfully removed from FPKMs matrix. | |
| WARN - SRR1317615 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1317615 successfully removed from FPKMs matrix. | |
| WARN - SRR1307583 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307583 successfully removed from FPKMs matrix. | |
| WARN - SRR1305351 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305351 successfully removed from FPKMs matrix. | |
| WARN - SRR1307076 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307076 successfully removed from FPKMs matrix. | |
| WARN - SRR1326520 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1326520 successfully removed from FPKMs matrix. | |
| WARN - SRR1309201 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1309201 successfully removed from FPKMs matrix. | |
| WARN - SRR1336948 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1336948 successfully removed from FPKMs matrix. | |
| WARN - SRR1338001 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1338001 successfully removed from FPKMs matrix. | |
| WARN - SRR1364997 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1364997 successfully removed from FPKMs matrix. | |
| WARN - SRR1370347 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1370347 successfully removed from FPKMs matrix. | |
| WARN - SRR1393510 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1393510 successfully removed from FPKMs matrix. | |
| WARN - SRR1414269 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1414269 successfully removed from FPKMs matrix. | |
| WARN - SRR1429563 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1429563 successfully removed from FPKMs matrix. | |
| WARN - SRR1433256 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1433256 successfully removed from FPKMs matrix. | |
| WARN - SRR615455 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR615455 successfully removed from FPKMs matrix. | |
| WARN - SRR1072321 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1072321 successfully removed from FPKMs matrix. | |
| WARN - SRR1308105 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308105 successfully removed from FPKMs matrix. | |
| WARN - SRR1307722 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307722 successfully removed from FPKMs matrix. | |
| WARN - SRR1308070 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308070 successfully removed from FPKMs matrix. | |
| WARN - SRR1307645 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307645 successfully removed from FPKMs matrix. | |
| WARN - SRR1307454 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307454 successfully removed from FPKMs matrix. | |
| WARN - SRR1343762 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1343762 successfully removed from FPKMs matrix. | |
| WARN - SRR1350023 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1350023 successfully removed from FPKMs matrix. | |
| WARN - SRR1306816 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306816 successfully removed from FPKMs matrix. | |
| WARN - SRR1367672 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1367672 successfully removed from FPKMs matrix. | |
| WARN - SRR1365556 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1365556 successfully removed from FPKMs matrix. | |
| WARN - SRR1402563 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1402563 successfully removed from FPKMs matrix. | |
| WARN - SRR1415137 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1415137 successfully removed from FPKMs matrix. | |
| WARN - SRR1442909 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1442909 successfully removed from FPKMs matrix. | |
| WARN - SRR607190 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR607190 successfully removed from FPKMs matrix. | |
| WARN - SRR1307615 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307615 successfully removed from FPKMs matrix. | |
| WARN - SRR1307521 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307521 successfully removed from FPKMs matrix. | |
| WARN - SRR1305587 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305587 successfully removed from FPKMs matrix. | |
| WARN - SRR1306327 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306327 successfully removed from FPKMs matrix. | |
| WARN - SRR1309267 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1309267 successfully removed from FPKMs matrix. | |
| WARN - SRR1348058 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1348058 successfully removed from FPKMs matrix. | |
| WARN - SRR1366627 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1366627 successfully removed from FPKMs matrix. | |
| WARN - SRR1398393 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1398393 successfully removed from FPKMs matrix. | |
| WARN - SRR1443049 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1443049 successfully removed from FPKMs matrix. | |
| WARN - SRR1077334 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1077334 successfully removed from FPKMs matrix. | |
| WARN - SRR1102538 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1102538 successfully removed from FPKMs matrix. | |
| WARN - SRR1307827 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307827 successfully removed from FPKMs matrix. | |
| WARN - SRR1305607 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305607 successfully removed from FPKMs matrix. | |
| WARN - SRR1309352 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1309352 successfully removed from FPKMs matrix. | |
| WARN - SRR1307191 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307191 successfully removed from FPKMs matrix. | |
| WARN - SRR1306895 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306895 successfully removed from FPKMs matrix. | |
| WARN - SRR1388959 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1388959 successfully removed from FPKMs matrix. | |
| WARN - SRR1307041 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307041 successfully removed from FPKMs matrix. | |
| WARN - SRR1459489 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1459489 successfully removed from FPKMs matrix. | |
| WARN - SRR1474182 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1474182 successfully removed from FPKMs matrix. | |
| WARN - SRR660390 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR660390 successfully removed from FPKMs matrix. | |
| WARN - SRR658909 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR658909 successfully removed from FPKMs matrix. | |
| WARN - SRR662221 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR662221 successfully removed from FPKMs matrix. | |
| WARN - SRR662558 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR662558 successfully removed from FPKMs matrix. | |
| WARN - SRR1308634 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308634 successfully removed from FPKMs matrix. | |
| WARN - SRR1306141 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306141 successfully removed from FPKMs matrix. | |
| WARN - SRR1305287 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305287 successfully removed from FPKMs matrix. | |
| WARN - SRR1310297 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1310297 successfully removed from FPKMs matrix. | |
| WARN - SRR1306423 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306423 successfully removed from FPKMs matrix. | |
| WARN - SRR1305479 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305479 successfully removed from FPKMs matrix. | |
| WARN - SRR1305223 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305223 successfully removed from FPKMs matrix. | |
| WARN - SRR1306927 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306927 successfully removed from FPKMs matrix. | |
| WARN - SRR1307360 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307360 successfully removed from FPKMs matrix. | |
| WARN - SRR1339047 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1339047 successfully removed from FPKMs matrix. | |
| WARN - SRR1307486 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307486 successfully removed from FPKMs matrix. | |
| WARN - SRR1387415 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1387415 successfully removed from FPKMs matrix. | |
| WARN - SRR1397115 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1397115 successfully removed from FPKMs matrix. | |
| WARN - SRR1399223 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1399223 successfully removed from FPKMs matrix. | |
| WARN - SRR1430001 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1430001 successfully removed from FPKMs matrix. | |
| WARN - SRR1436246 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1436246 successfully removed from FPKMs matrix. | |
| WARN - SRR1467633 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1467633 successfully removed from FPKMs matrix. | |
| WARN - SRR602895 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR602895 successfully removed from FPKMs matrix. | |
| WARN - SRR1072998 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1072998 successfully removed from FPKMs matrix. | |
| WARN - SRR1308137 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308137 successfully removed from FPKMs matrix. | |
| WARN - SRR1308121 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308121 successfully removed from FPKMs matrix. | |
| WARN - SRR1308019 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308019 successfully removed from FPKMs matrix. | |
| WARN - SRR1306077 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306077 successfully removed from FPKMs matrix. | |
| WARN - SRR1306013 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306013 successfully removed from FPKMs matrix. | |
| WARN - SRR1306455 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306455 successfully removed from FPKMs matrix. | |
| WARN - SRR1306293 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306293 successfully removed from FPKMs matrix. | |
| WARN - SRR1306259 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306259 successfully removed from FPKMs matrix. | |
| WARN - SRR1308379 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308379 successfully removed from FPKMs matrix. | |
| WARN - SRR1340117 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1340117 successfully removed from FPKMs matrix. | |
| WARN - SRR1374631 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1374631 successfully removed from FPKMs matrix. | |
| WARN - SRR1384352 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1384352 successfully removed from FPKMs matrix. | |
| WARN - SRR1381913 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1381913 successfully removed from FPKMs matrix. | |
| WARN - SRR1388855 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1388855 successfully removed from FPKMs matrix. | |
| WARN - SRR1407334 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1407334 successfully removed from FPKMs matrix. | |
| WARN - SRR1446582 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1446582 successfully removed from FPKMs matrix. | |
| WARN - SRR1459376 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1459376 successfully removed from FPKMs matrix. | |
| WARN - SRR613294 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR613294 successfully removed from FPKMs matrix. | |
| WARN - SRR655017 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR655017 successfully removed from FPKMs matrix. | |
| WARN - SRR662775 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR662775 successfully removed from FPKMs matrix. | |
| WARN - SRR1122885 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1122885 successfully removed from FPKMs matrix. | |
| WARN - SRR1305051 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305051 successfully removed from FPKMs matrix. | |
| WARN - SRR1308239 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308239 successfully removed from FPKMs matrix. | |
| WARN - SRR1305319 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305319 successfully removed from FPKMs matrix. | |
| WARN - SRR1305939 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305939 successfully removed from FPKMs matrix. | |
| WARN - SRR1307255 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307255 successfully removed from FPKMs matrix. | |
| WARN - SRR1307006 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307006 successfully removed from FPKMs matrix. | |
| WARN - SRR1343986 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1343986 successfully removed from FPKMs matrix. | |
| WARN - SRR1402536 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1402536 successfully removed from FPKMs matrix. | |
| WARN - SRR1442533 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1442533 successfully removed from FPKMs matrix. | |
| WARN - SRR1467340 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1467340 successfully removed from FPKMs matrix. | |
| WARN - SRR612587 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR612587 successfully removed from FPKMs matrix. | |
| WARN - SRR1083800 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1083800 successfully removed from FPKMs matrix. | |
| WARN - SRR1089158 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1089158 successfully removed from FPKMs matrix. | |
| WARN - SRR1307843 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307843 successfully removed from FPKMs matrix. | |
| WARN - SRR1308458 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308458 successfully removed from FPKMs matrix. | |
| WARN - SRR1311817 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1311817 successfully removed from FPKMs matrix. | |
| WARN - SRR1305853 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305853 successfully removed from FPKMs matrix. | |
| WARN - SRR1305511 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1305511 successfully removed from FPKMs matrix. | |
| WARN - SRR1310313 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1310313 successfully removed from FPKMs matrix. | |
| WARN - SRR1311370 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1311370 successfully removed from FPKMs matrix. | |
| WARN - SRR1306035 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1306035 successfully removed from FPKMs matrix. | |
| WARN - SRR1307325 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1307325 successfully removed from FPKMs matrix. | |
| WARN - SRR1309786 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1309786 successfully removed from FPKMs matrix. | |
| WARN - SRR1308442 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1308442 successfully removed from FPKMs matrix. | |
| WARN - SRR1357579 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1357579 successfully removed from FPKMs matrix. | |
| WARN - SRR1382804 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1382804 successfully removed from FPKMs matrix. | |
| WARN - SRR1396057 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1396057 successfully removed from FPKMs matrix. | |
| WARN - SRR1445789 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1445789 successfully removed from FPKMs matrix. | |
| WARN - SRR1489524 was not found in XML config. Removing from FPKMs matrix... | |
| WARN - SRR1489524 successfully removed from FPKMs matrix. | |
| INFO - Successfully read /nfs/public/ro/fg/atlas/experiments_test/E-MTAB-5214/E-MTAB-5214-transcripts-tpms.tsv.undecorated | |
| INFO - Running quantile normalization... | |
| INFO - Running quantile normalization in R... | |
| FATAL - Errors during R script execution, details below: | |
| Error in `[.data.frame`(fpkmsDF, , columnHeadings, drop = FALSE) : | |
| undefined columns selected | |
| Calls: lapply -> FUN -> [ -> [.data.frame | |
| Execution halted | |
| Errors during R script execution, details below: | |
| Error in `[.data.frame`(fpkmsDF, , columnHeadings, drop = FALSE) : | |
| undefined columns selected | |
| Calls: lapply -> FUN -> [ -> [.data.frame | |
| Execution halted |
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