experiments_diff.sh

[fg_atlas@ebi-005 ~]$ ls $ATLAS_EXPS | grep 'E-.*' | tee /var/tmp/atlas-exps-exps | wc -l
3165
[fg_atlas@ebi-005 ~]$ ls $ATLAS_PROD/analysis/*/*/experiments | grep 'E-.*' | tee /var/tmp/atlas-prod-exps | wc -l
3244
[fg_atlas@ebi-005 ~]$ sort /var/tmp/atlas-prod-exps -o /var/tmp/atlas-prod-exps
[fg_atlas@ebi-005 ~]$ sort /var/tmp/atlas-exps-exps -o /var/tmp/atlas-exps-exps
 # experiments in atlas exps but not in atlas prod
[fg_atlas@ebi-005 ~]$ comm -13 /var/tmp/atlas-prod-exps /var/tmp/atlas-exps-exps
E-GEOD-53580
E-GEOD-73312
E-GEOD-74905
E-GEOD-77846
E-MTAB-3398
E-MTAB-5061
E-TABM-358
E-TABM-713

# I have moved a bunch of experiments with missing array designs here:
[fg_atlas@ebi-005 ~]$ cd $ATLAS_PROD/failedProcessing/tmp/*/*/experiments ; ls
E-GEOD-13316  E-GEOD-21679  E-GEOD-23739  E-GEOD-27626	E-GEOD-37556  E-GEOD-46475  E-GEOD-52227  E-MTAB-1430  E-MTAB-3711  E-MTAB-4028  E-TABM-357
E-GEOD-16567  E-GEOD-21706  E-GEOD-25185  E-GEOD-29747	E-GEOD-37782  E-GEOD-48406  E-MEXP-2642   E-MTAB-2545  E-MTAB-3930  E-MTAB-4507  E-TABM-358
E-GEOD-21070  E-GEOD-22479  E-GEOD-25820  E-GEOD-31188	E-GEOD-44394  E-GEOD-51615  E-MEXP-2702   E-MTAB-309   E-MTAB-3956  E-MTAB-5011  E-TABM-713

# which experiments are missing from Atlas exps because I've moved them out?
[fg_atlas@ebi-005 experiments]$ comm -12 <(comm -13 /var/tmp/atlas-prod-exps /var/tmp/atlas-exps-exps) <(ls)
E-TABM-358
E-TABM-713

# uh oh let's move them back
[fg_atlas@ebi-005 experiments]$ mv E-TABM-358 E-TABM-713 $ATLAS_PROD/analysis/differential/microarray/experiments

# TODO find out where the other five experiments are