does_go_replacement_happen.sh

cd ~/dev/atlas-annotations
# modify the annsrcs to be (much) smaller 
# test environment 
source util/create_test_env.sh /var/tmp/will-it-go 
  
# use the whole file from prod
scp ebi-cli:/nfs/production3/ma/home/atlas3-production/bioentity_properties/go/go.alternativeID2CanonicalID.tsv /var/tmp/will-it-go/bioentity_properties/go/go.alternativeID2CanonicalID.tsv

# get some properties populated in test environment
export JAVA_OPTS=-Xmx3000M
amm -s -c 'import $file.src.pipeline.main; main.forceAll();'

# control environment
source util/create_test_env.sh /var/tmp/control-go
amm -s -c 'import $file.src.pipeline.main; main.forceAll();'

# today I learned you can diff whole directories
diff /var/tmp/control-go/bioentity_properties/ensembl /var/tmp/will-it-go/bioentity_properties/ensembl > /var/tmp/diff-go

# the diffs seem right