Atlas numbers

atlas-count-assays-in-experiments.sh

#count assay groups per experiment - $ATLAS_FTP/experiments
for e in $(ls /ebi/ftp/pub/databases/microarray/data/atlas/experiments | grep E-); do grep -P '<assay' $e/$e-configuration.xml | grep -v assay_group | wc -l | awk -v "EXP=$e" '{print EXP "\t" $1}'; done | tee /var/tmp/assay-groups-per-exp-prod.txt

#count assay groups per experiment - $ATLAS_EXPS

for e in $(ls /nfs/public/ro/fg/atlas/experiments | grep E-); do grep -P '<assay' $e/$e-configuration.xml | grep -v assay_group | wc -l | awk -v "EXP=$e" '{print EXP "\t" $1}'; done | tee /var/tmp/assay-groups-per-exp.txt

#assay groups in last release
cat /var/tmp/assay-groups-per-exp-prod.txt | cut -f 2 -d $'\t' | paste -sd+ - | bc
#82485

#assay groups in this release
cat /var/tmp/assay-groups-per-exp.txt | cut -f 2 -d $'\t' | paste -sd+ - | bc
#83789