Created
June 19, 2018 10:50
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Get sample attributes for an ENA sample
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| sampleAttributes() { | |
| curl -s "https://www.ebi.ac.uk/ena/data/view/$1&display=xml " \ | |
| | perl -MXML::LibXML -e ' | |
| for my $attr (XML::LibXML->load_xml(string => do {local $/ ; <> }) -> findnodes("./ROOT/SAMPLE/SAMPLE_ATTRIBUTES/*")) { | |
| print $attr->findvalue("./TAG") . "\t" . $attr->findvalue("./VALUE"). "\n" | |
| } ' | |
| } | |
| sampleAttributes SRS1334254 | |
| cultivar CCN51 | |
| dev_stage Adult tree | |
| geo_loc_name Ecuador: local selection | |
| tissue mix Leaf-flower | |
| BioSampleModel Plant | |
| ENA-SPOT-COUNT 14224288 | |
| ENA-BASE-COUNT 2844857600 | |
| ENA-FIRST-PUBLIC 2016-03-11 | |
| ENA-LAST-UPDATE 2016-03-14 |
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