Created
December 4, 2010 11:07
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my $sql = "SELECT count(s.seq_id) AS nb, isha.motifs | |
FROM sequences s | |
JOIN ( | |
SELECT sha.seq_id AS shaseq_id,GROUP_CONCAT(i.ipr_code ORDER BY i.ipr_code) AS motifs | |
FROM seq_has_an sha, ipr i | |
WHERE i.ipr_id = sha.ipr_id AND i.ipr_code IN ($IPR_list) | |
GROUP BY shaseq_id | |
) isha ON s.seq_id = isha.shaseq_id | |
WHERE s.species_id = $_{species_id} | |
GROUP BY isha.motifs | |
ORDER BY isha.motifs;"; | |
my $number_by_ipr_combination = $dbh->selectall_arrayref( $sql, { Slice => {} } ); | |
--------------- | |
my $sql = "SELECT count(s.seq_id) AS nb, isha.motifs | |
FROM sequences s | |
JOIN ( | |
SELECT sha.seq_id AS shaseq_id,GROUP_CONCAT(i.ipr_code ORDER BY i.ipr_code) AS motifs | |
FROM seq_has_an sha, ipr i | |
WHERE i.ipr_id = sha.ipr_id AND i.ipr_code IN ($IPR_list) | |
GROUP BY shaseq_id | |
) isha ON s.seq_id = isha.shaseq_id | |
WHERE s.species_id = $_{species_id} | |
GROUP BY isha.motifs | |
ORDER BY isha.motifs;"; | |
my $number_by_ipr_combination = $dbs->query( $sql )->hashes; |
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