Job simitting

jobSubmit.py

#!/bin/env python

import commands
import glob
import time
import os
import sys

maxJobLim = 46
joblist = glob.glob('./job_*.sge')
command = 'qstat | grep $USER |wc -l'
p = commands.getstatusoutput(command)
jobnum = int(p[1])

log = 'submittedList.txt'
logging = open(log,'w')
for i in range(len(joblist)):
    p = commands.getstatusoutput(command)
    jobnum = int(p[1])
    logging.write('Current job number: %i\n' %jobnum)
    if jobnum < maxJobLim:
        submit = 'qsub %s ' %(joblist[i])
        os.system(submit)
        logging.write('submitted: '+joblist[i]+'\n')
    else:
        while jobnum > maxJobLim:
            time.sleep(600)
            p = commands.getstatusoutput(command)
            jobnum = int(p[1])
        submit = 'qsub %s ' %(joblist[i])
        os.system(submit)
        logging.write('submitted: '+joblist[i]+'\n')