Last active
August 27, 2015 21:46
-
-
Save welch/92e1a9cba4af229fb520 to your computer and use it in GitHub Desktop.
convert zemax pupil data to csv
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
#!/usr/bin/env python | |
""" | |
zmx2csv.py: convert zemax output to csv for matlab import | |
usage: zmx2csv.py filename.txt ... | |
reads each filename.txt, outputting filename.csv | |
sample input file: forPupilMapping_Prescription.txt | |
""" | |
import sys | |
import argparse | |
import csv | |
def parse_line(line): | |
name, value = line.split(':') | |
name = name.strip() | |
value = value.split("=")[-1].split(",")[-1].split("(")[0].strip() | |
# pull a number out of the value string if we can | |
try: | |
value = int(value) | |
except ValueError: | |
try: | |
value = float(value) | |
except ValueError: | |
pass | |
return name, value | |
def main(args=None, skip=10, keep=50): | |
parser = argparse.ArgumentParser( | |
description='Infer log message patterns from logfiles' | |
) | |
parser.add_argument( | |
"infile", nargs='*', | |
help="path(s) to input files.") | |
parser.add_argument( | |
"--skip", type=int, default=skip, | |
help="skip this many lines at the beginning (default = %d)" % skip) | |
parser.add_argument( | |
"--keep", type=int, default=keep, | |
help="keep this many lines after skipping (default = %d)" % keep) | |
parser.add_argument( | |
"--all", action='store_true', | |
help="keep lines without numeric data") | |
parser.add_argument( | |
"--noheader", action='store_true', | |
help="don't write header in csv file") | |
args = parser.parse_args(args=args) | |
for fname in args.infile: | |
data = {} | |
with open(fname,"r") as f: | |
for i, line in enumerate(f): | |
line = line.replace('\0', '').replace('\r','') # remove DOS bullshit | |
if (i < args.skip): | |
continue | |
elif (i == args.skip + args.keep): | |
break | |
name, value = parse_line(line) | |
if (args.all or isinstance(value, (int, float))): | |
data[name] = value | |
# data now contains an entry for each keeper line | |
fname_csv = fname.split('.')[0]+'.csv' | |
with open(fname_csv, 'w') as csvfile: | |
writer = csv.DictWriter(csvfile, data.keys()) | |
if (not args.noheader): | |
writer.writeheader() | |
writer.writerow(data) | |
if __name__ == '__main__': | |
main() | |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment