boinc

boinc

#test locally
boinc_test boinc_submit.txt
/work/boinc/bin/run_test_rah.pl run.fold.boinc.job

#submit small cases
~boinc/bin/ralph_submit boinc_submit.txt
~boinc/bin/boinc_submit boinc_submit.txt

#check success rate
~boinc/bin/ralph_q wendao
~boinc/bin/boinc_q wendao

#scale to big size
ralph_resize -size 10000 [id]

#get results
/net/BOINC/results/[name]

foldit

http://homes.cs.washington.edu/~scooper/foldit_builds/

To load a PDB, enter into any puzzle in the game, then press
CTRL+ALT+SHIFT+A to load a protein, CTRL+ALT+SHIFT+S to save.

To use DSSP to assign secondary structure: CTRL+ALT+SHIFT+D

How do we see CPK view, CPK + Hydrogen view, active site view?
=> Use following hotkeys
1) CPK view -> press CTRL + SHIFT + C
2) CPK + Hydrogen view -> press CTRL + SHIFT + V
3) Active site view -> press CTRL + SHIFT + X