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widdowquinn/chlorobium_cmd.txt

Last active December 27, 2015 20:49
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Command lines for running the calculate_ani.py script on downloaded Chlorobium sequences in the test_isolates subdirectory, drawing graphical output and keeping a verbose log in each case.
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chlorobium_cmd.txt
time python calculate_ani.py -i test_isolates/ -m ANIb -o chlorobium_anib -g -v -l chlorobium_anib.log
time python calculate_ani.py -i test_isolates/ -m ANIm -o chlorobium_anim -g -v -l chlorobium_anim.log
time python calculate_ani.py -i test_isolates/ -m TETRA -o chlorobium_tetra -g -v -l chlorobium_tetra.log
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