Leighton Pritchard widdowquinn

I recently needed a way to run unit tests on Travis for a project that uses Sun Grid Engine, Grid Map. Unfortunately, it seemed like no one had figured out how to set that up on Travis before (or simply create a single-machine installation without any user interaction). After hours of trial-and-error, I now know the secrets to making a single-machine installation of SGE that runs on Travis, and I'm sharing my script to prevent other people from going through the same frustrating experience.

To use the install_sge.sh script below, you just need to copy all of the files in this gist to a travis sub-directory directly under the root of your GitHub project, and add the following lines to your .travis.yml

before_install:
  - travis/install_sge.sh
  - export SGE_ROOT=/var/lib/gridengine
  - export SGE_CELL=default
  - export DRMAA_LIBRARY_PATH=/usr/lib/libdrmaa.so.1.0

tmux shortcuts & cheatsheet

start new:

tmux

start new with session name:

tmux new -s myname

	source("http://bioconductor.org/biocLite.R")
	biocLite("genomes")

	library(genomes)
	library(ggplot2)

	valid <- c("released", "created", "submitted")

	data(proks)
	update(proks)

	#!/usr/bin/env python

	from numpy import asmatrix, asarray, ones, zeros, mean, sum, arange, prod, dot, loadtxt
	from numpy.random import random, randint
	import pickle

	MISSING_VALUE = -1 # a constant I will use to denote missing integer values

	def impute_hidden_node(E, I, theta, sample_hidden):