Derek Wright wrightdw
DanaCase
/ AperioToQuPath.groovy
Last active
November 21, 2024 15:01
Convert Exported Aperio Image Scope Annotations to QuPath Annotations
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| import qupath.lib.scripting.QP | |
| import qupath.lib.geom.Point2 | |
| import qupath.lib.roi.PolygonROI | |
| import qupath.lib.objects.PathAnnotationObject | |
| import qupath.lib.images.servers.ImageServer | |
| //Aperio Image Scope displays images in a different orientation | |
| def rotated = true |
brian-bot
/ knit2synapse.R
Last active
November 23, 2020 18:37
A function to allow users to leverage knitr functionality when constructing Synapse wiki content.
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| ##### | |
| ## AUTHOR: BRIAN M. BOT | |
| ## ORGANIZATION: SAGE BIONETWORKS | |
| ## | |
| ## ALLOW USERS TO LEVERAGE KNITR WHEN CONSTRUCTING SYNAPSE WIKI CONTENT | |
| ##### | |
| ## PARAMETERS: | |
| ## file: path to a local .Rmd file which to knit | |
| ## owner: a Synapse object which will own the resulting WikiPage (usually a Project, Folder, or File) | |
| ## parentWikiId (optional): if the resulting WikiPage is to be a subpage of another WikiPage, this is the id for the parent WikiPage (NOTE: owner is still required) |