Created
July 8, 2013 20:36
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Queries to fetch data for http://www.biostat.wisc.edu/~kbroman/D3/cistrans/
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| ################# MARKER/LOD/GENE FOR A GIVEN PROBE ############################### | |
| PREFIX f2gns: <http://www.rqtl.org/ns/dataset/f2g#> | |
| PREFIX phenons: <http://www.rqtl.org/ns/dataset/islet_mlratio#> | |
| PREFIX scanns: <http://www.rqtl.org/ns/dataset/scan_islet#> | |
| PREFIX annons: <http://www.rqtl.org/ns/#> | |
| PREFIX qb: <http://purl.org/linked-data/cube#> | |
| PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | |
| PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> | |
| PREFIX prop: <http://www.rqtl.org/dc/properties/> | |
| PREFIX cs: <http://www.rqtl.org/dc/cs/> | |
| PREFIX skos: <http://www.w3.org/2004/02/skos/core#> | |
| SELECT ?marker ?lod ?gene WHERE { | |
| ?s qb:dataSet scanns:dataset-scan_islet; | |
| prop:probe "497638"^^<http://www.w3.org/2001/XMLSchema#integer>; | |
| prop:marker ?marker; | |
| prop:lod ?lod. | |
| ?t qb:dataSet annons:dataset-annot; | |
| rdfs:label "497638"; | |
| prop:gene ?gene. | |
| } | |
| LIMIT 250 |
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| ################## ALL PHENO/GENO FOR EACH MOUSE on a given probe/marker ###################### | |
| PREFIX f2gns: <http://www.rqtl.org/ns/dataset/f2g#> | |
| PREFIX phenons: <http://www.rqtl.org/ns/dataset/islet_mlratio#> | |
| PREFIX qb: <http://purl.org/linked-data/cube#> | |
| PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | |
| PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> | |
| PREFIX prop: <http://www.rqtl.org/dc/properties/> | |
| PREFIX cs: <http://www.rqtl.org/dc/cs/> | |
| PREFIX skos: <http://www.w3.org/2004/02/skos/core#> | |
| SELECT DISTINCT ?mouse ?pheno ?geno WHERE { | |
| ?s qb:dataSet phenons:dataset-islet_mlratio; | |
| prop:individual ?mouse; | |
| prop:probe "511932"^^<http://www.w3.org/2001/XMLSchema#integer>; | |
| prop:pheno ?pheno. | |
| ?t qb:dataSet f2gns:dataset-f2g; | |
| prop:marker "rs13475697"; | |
| prop:MouseNum ?mouse2; | |
| prop:genotype ?geno. | |
| FILTER(?mouse2 = ?mouse) | |
| } | |
| LIMIT 175 |
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