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nextflow workflow using cvstk to convert a list of tuples to a "wide" tsv
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process PIVOT_WIDER{ | |
input: path(tsv) | |
output: path("wider.tsv"), emit: tsv | |
script: | |
""" | |
csvtk spread -t -k 2 -v 3 -H ${tsv} > wider.tsv | |
""" | |
} | |
workflow { | |
ch_rows= channel.fromList([["A","V1",1],["A","V2",2],["B","V1",3],["B","V2",4]]) | |
.view() | |
.map{s,c,v->"${s}\t${c}\t${v}"}.view() | |
ch_narrow=ch_rows.collectFile(name:"test.tsv",newLine:true).view() | |
PIVOT_WIDER(ch_narrow).view() | |
} |
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