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# 1. openmpi-2.1.5 /home/qasdfgtyuiop/program/openmpi/ | |
cd ~ | |
mkdir program | |
cd program/ | |
wget https://download.open-mpi.org/release/open-mpi/v2.1/openmpi-2.1.5.tar.gz | |
tar -zxvf openmpi-2.1.5.tar.gz | |
rm openmpi-2.1.5.tar.gz | |
cd openmpi-2.1.5/ | |
./configure --prefix="/home/qasdfgtyuiop/program/openmpi" | |
make # take a while | |
make install # take a while | |
# add Path | |
export PATH="/home/qasdfgtyuiop/program/openmpi/bin:/home/qasdfgtyuiop/program/orca:$PATH" | |
export LD_LIBRARY_PATH="/home/qasdfgtyuiop/program/openmpi/lib:/home/qasdfgtyuiop/program/orca:$LD_LIBRARY_PATH" | |
export PATH="/home/qasdfgtyuiop/program/orca:$PATH" | |
export LD_LIBRARY_PATH="/home/qasdfgtyuiop/program/orca:$LD_LIBRARY_PATH" | |
source ~/.bashrc | |
which mpirun # /home/qasdfgtyuiop/program/openmpi/bin/mpirun | |
mpiexec -V # mpiexec (OpenRTE) 2.1.5 | |
# 2. orca | |
cd ~/program/ | |
wget https://yyrcd-1256568788.cos.na-siliconvalley.myqcloud.com/yyrcd/2019-05-27-orca_4_1_2_linux_x86-64_shared_openmpi215.tar.xz | |
tar -xvf 2019-05-27-orca_4_1_2_linux_x86-64_shared_openmpi215.tar.xz | |
rm 2019-05-27-orca_4_1_2_linux_x86-64_shared_openmpi215.tar.xz | |
mv orca_4_1_2_linux_x86-64_shared_openmpi215/ orca/ | |
# Path is already added. | |
input.inp | |
``` | |
! B3LYP def2-SVP Opt PAL4 | |
# My first ORCA calculation | |
*xyz 0 1 | |
C -0.02262 0.62651 0.40646 | |
C 0.87523 1.83107 0.10319 | |
H 0.37864 2.77041 0.42764 | |
H 1.09034 1.89773 -0.98520 | |
H 1.83652 1.74040 0.65269 | |
C 0.67355 -0.67632 -0.00231 | |
H 0.88264 -0.68531 -1.09388 | |
H 0.03125 -1.54815 0.24584 | |
H 1.63324 -0.78640 0.54641 | |
C -1.36659 0.76504 -0.31717 | |
H -0.21342 0.59579 1.50189 | |
H -1.88043 1.69623 0.00390 | |
H -2.02467 -0.09556 -0.07118 | |
H -1.21924 0.79932 -1.41828 | |
* | |
``` | |
/home/qasdfgtyuiop/program/orca/orca input.inp | |
# slurm | |
#!/bin/bash | |
#SBATCH -t 00:10:00 | |
#SBATC -n 1 | |
#SBATCH --ntasks-per-node=4 | |
export PATH="/home/qasdfgtyuiop/program/orca:$PATH" | |
export LD_LIBRARY_PATH="/home/qasdfgtyuiop/program/orca:$LD_LIBRARY_PATH" | |
module load intel/2018 openmpi/3.1.2 | |
/home/qasdfgtyuiop/program/orca/orca input.inp |
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