Install the Rails gem if you haven't done so before
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| #!/usr/bin/env python | |
| # Sequence-based structural alignment of two proteins. | |
| # source from: https://gist.github.com/JoaoRodrigues/e3a4f2139d10888c679eb1657a4d7080 | |
| # modified by Yu-Yuan Yang | |
| import argparse | |
| import pathlib | |
| from Bio.Align import PairwiseAligner, substitution_matrices | |
| from Bio.Data.PDBData import protein_letters_3to1 as aa3to1 |
