Created
January 23, 2021 12:08
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visulising the correltion between two views of the same samples
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# visulising the correltion between two views of the same samples | |
# such as the first 4 features in mtcars as 1 view, the others as another view. | |
# as it not easy to implement using corrplot. | |
# the resulting figure | |
![clustering correlation](https://i.ibb.co/LRKsKCC/corrletion-hclust.png]) | |
library(ComplexHeatmap) | |
data(mtcars) | |
cor_list <- Hmisc::rcorr(as.matrix(mtcars)) | |
r_mat <- cor_list$r | |
p_mat <- cor_list$P | |
r_mat_test <- r_mat[1:4,5:11] | |
p_mat_test <- p_mat[1:4,5:11] | |
col_fun = circlize::colorRamp2(c(-1, 0, 1), c("blue", "white", "red")) | |
Heatmap(r_mat_test, name = "cor", col = col_fun, rect_gp = gpar(type = "none") | |
, cell_fun=function(j, i, x, y, width, height, fill) { | |
grid.rect(x = x, y = y, width = width, height = height, | |
gp = gpar(col = "grey", fill = NA)) | |
grid.circle(x = x, y = y, r = abs(r_mat_test[i, j]) * min(unit.c(width, height)), | |
gp = gpar(fill = col_fun(r_mat_test[i, j]), col = NA)) | |
grid.text(sprintf(ifelse(p_mat_test[i, j]<0.05, "*", "") ), x, y, | |
gp = gpar(fontsize = 15)) | |
} ) |
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