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February 11, 2017 16:11
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An example of converting images to tfrecords, in this case we have an image-to-image mapping, so we have some input images and corresponding label images. Correspoing reading code is in comments below. The code is barebones and non threaded for simpplicity a threaded example is here : https://gist.github.com/AtiqueUrRehman/c1ccc7a76115262e20e507…
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from __future__ import absolute_import | |
from __future__ import division | |
from __future__ import print_function | |
from datetime import datetime | |
import os | |
import random | |
import sys | |
import threading | |
import math | |
import numpy as np | |
import tensorflow as tf | |
def _int64_feature(value): | |
"""Wrapper for inserting int64 features into Example proto.""" | |
if not isinstance(value, list): | |
value = [value] | |
return tf.train.Feature(int64_list=tf.train.Int64List(value=value)) | |
def _bytes_feature(value): | |
"""Wrapper for inserting bytes features into Example proto.""" | |
return tf.train.Feature(bytes_list=tf.train.BytesList(value=[value])) | |
def _convert_to_example(orig_filename,label_filename, orig_image_buffer, label_image_buffer, | |
orig_height, orig_width, label_height, label_width): | |
"""Build an Example proto for an example. | |
Args: | |
orig_filename: string, path to an image file, e.g., '/path/to/example.JPG' | |
label_filename: string, path to an image file, e.g., '/path/to/example.JPG' | |
orig_image_buffer: string, JPEG encoding of RGB image | |
label_image_buffer: string, JPEG encoding of RGB image | |
orig_height: integer, image height in pixels | |
orig_width: integer, image width in pixels | |
label_height: integer, image height in pixels | |
label_width: integer, image width in pixels | |
Returns: | |
Example proto | |
""" | |
colorspace = 'RGB' | |
channels = 3 | |
image_format = 'JPEG' | |
example = tf.train.Example(features=tf.train.Features(feature={ | |
'orig/image/height': _int64_feature(orig_height), | |
'orig/image/width': _int64_feature(orig_width), | |
'orig/image/colorspace': _bytes_feature(tf.compat.as_bytes(colorspace)), | |
'orig/image/channels': _int64_feature(channels), | |
'orig/image/format': _bytes_feature(tf.compat.as_bytes(image_format)), | |
'orig/image/filename': _bytes_feature(tf.compat.as_bytes(os.path.basename(orig_filename))), | |
'orig/image/encoded': _bytes_feature(tf.compat.as_bytes(orig_image_buffer)), | |
'label/image/height': _int64_feature(label_height), | |
'label/image/width': _int64_feature(label_width), | |
'label/image/colorspace': _bytes_feature(tf.compat.as_bytes(colorspace)), | |
'label/image/channels': _int64_feature(channels), | |
'label/image/format': _bytes_feature(tf.compat.as_bytes(image_format)), | |
'label/image/filename': _bytes_feature(tf.compat.as_bytes(os.path.basename(label_filename))), | |
'label/image/encoded': _bytes_feature(tf.compat.as_bytes(label_image_buffer)) })) | |
return example | |
class ImageCoder(object): | |
"""Helper class that provides TensorFlow image coding utilities.""" | |
def __init__(self): | |
# Create a single Session to run all image coding calls. | |
self._sess = tf.Session() | |
# Initializes function that converts PNG to JPEG data. | |
self._png_data = tf.placeholder(dtype=tf.string) | |
image = tf.image.decode_png(self._png_data, channels=3) | |
self._png_to_jpeg = tf.image.encode_jpeg(image, format='rgb', quality=100) | |
# Initializes function that decodes RGB JPEG data. | |
self._decode_jpeg_data = tf.placeholder(dtype=tf.string) | |
self._decode_jpeg = tf.image.decode_jpeg(self._decode_jpeg_data, channels=3) | |
def png_to_jpeg(self, image_data): | |
return self._sess.run(self._png_to_jpeg, | |
feed_dict={self._png_data: image_data}) | |
def decode_jpeg(self, image_data): | |
image = self._sess.run(self._decode_jpeg, | |
feed_dict={self._decode_jpeg_data: image_data}) | |
assert len(image.shape) == 3 | |
assert image.shape[2] == 3 | |
return image | |
def _is_png(filename): | |
"""Determine if a file contains a PNG format image. | |
Args: | |
filename: string, path of the image file. | |
Returns: | |
boolean indicating if the image is a PNG. | |
""" | |
return '.png' in filename | |
def _process_image(filename, coder): | |
"""Process a single image file. | |
Args: | |
filename: string, path to an image file e.g., '/path/to/example.JPG'. | |
coder: instance of ImageCoder to provide TensorFlow image coding utils. | |
Returns: | |
image_buffer: string, JPEG encoding of RGB image. | |
height: integer, image height in pixels. | |
width: integer, image width in pixels. | |
""" | |
# Read the image file. | |
with tf.gfile.FastGFile(filename, 'r') as f: | |
image_data = f.read() | |
# Convert any PNG to JPEG's for consistency. | |
if _is_png(filename): | |
print('Converting PNG to JPEG for %s' % filename) | |
image_data = coder.png_to_jpeg(image_data) | |
# Decode the RGB JPEG. | |
image = coder.decode_jpeg(image_data) | |
# Check that image converted to RGB | |
assert len(image.shape) == 3 | |
height = image.shape[0] | |
width = image.shape[1] | |
assert image.shape[2] == 3 | |
return image_data, height, width | |
def _process_image_files_batch(coder, name, orig_filenames, label_filenames, output_directory, shards_size): | |
"""Processes and saves list of images as TFRecord in 1 thread. | |
Args: | |
coder: instance of ImageCoder to provide TensorFlow image coding utils. | |
name: string, unique identifier specifying the data set | |
orig_filenames: list of strings; each string is a path to an image file | |
label_filenames: list of strings; each string is a path to an image file | |
outpul_directory : Directory for output files | |
shards_size: integer size of shards for this data set. | |
""" | |
if (shards_size != -1): | |
total_shards = int(math.ceil(len(orig_filenames) / shards_size)) | |
else: | |
total_shards = 1 | |
shards_size = len(orig_filenames) | |
print ("Total Partitions %d, partition size %d "% (total_shards, shards_size)) | |
for shard in range(total_shards): | |
# Generate a sharded version of the file name, e.g. 'train-00002-of-00010' | |
output_filename = '%s-%.5d-of-%.5d' % (name, shard, total_shards) | |
output_file = os.path.join(output_directory, output_filename) | |
writer = tf.python_io.TFRecordWriter(output_file) | |
shard_counter = 0 | |
files_in_shard = np.arange(shard*shards_size, min((shard+1)*shards_size, len(orig_filenames) ), dtype=int) | |
for i in files_in_shard: | |
orig = orig_filenames[i] | |
label = label_filenames[i] | |
orig_image_buffer, orig_height, orig_width = _process_image(orig, coder) | |
label_image_buffer, label_height, label_width = _process_image(label, coder) | |
example = _convert_to_example(orig,label, orig_image_buffer, label_image_buffer, | |
orig_height, orig_width, label_height, label_width) | |
writer.write(example.SerializeToString()) | |
print ("Processed files %d of %d" % (shard*shards_size, len(orig_filenames))) | |
writer.close() | |
sys.stdout.flush() | |
shard_counter = 0 | |
sys.stdout.flush() | |
def main(orignal_image_folder, label_image_folder, output_directory, shards_size = -1): | |
orig_img_paths = [os.path.join(orignal_image_folder,im) for im in os.listdir(orignal_image_folder) if os.path.isfile (os.path.join(orignal_image_folder,im))] | |
label_img_paths = [os.path.join(label_image_folder,im) for im in os.listdir(label_image_folder) if os.path.isfile(os.path.join(label_image_folder,im))] | |
coder = ImageCoder() | |
_process_image_files_batch(coder, "data", orig_img_paths, label_img_paths, output_directory, shards_size) | |
if __name__ == '__main__': | |
if len(sys.argv) < 4 or len(sys.argv) > 5: | |
print ("Usage imagesToTfrecords <input_images_folder> <label_images_folder> <output_folder> (optional) <output partition size>") | |
elif len(sys.argv) == 4: | |
main(sys.argv[1], sys.argv[2], sys.argv[3]) | |
else: | |
main(sys.argv[1], sys.argv[2], sys.argv[3], int(sys.argv[4])) | |
# For reading files | |
# import tensorflow as tf | |
# import matplotlib.pyplot as plt | |
# filename = "../Data/tfrecords/cool-00000-of-00004" | |
# sess = tf.Session() | |
# for serialized_example in tf.python_io.tf_record_iterator(filename): | |
# example = tf.train.Example() | |
# example.ParseFromString(serialized_example) | |
# # traverse the Example format to get data | |
# img = example.features.feature['origimage/encoded'] | |
# # get the data out of tf record | |
# orignal_image_height = example.features.feature['orig/image/height'] | |
# orignal_image_width = example.features.feature['orig/image/width'] | |
# orignal_image_colors = example.features.feature['orig/image/colorspace'] | |
# orignal_image_channels = example.features.feature['orig/image/channels'] | |
# orignal_image_format = example.features.feature['orig/image/format'] | |
# orignal_image_filename = example.features.feature['orig/image/filename'] | |
# orignal_image_data = example.features.feature['orig/image/encoded'] | |
# noisy_image_height = example.features.feature['label/image/height'] | |
# noisy_image_width = example.features.feature['label/image/width'] | |
# noisy_image_colors = example.features.feature['label/image/colorspace'] | |
# noisy_image_channels = example.features.feature['label/image/channels'] | |
# noisy_image_format = example.features.feature['label/image/format'] | |
# noisy_image_filename = example.features.feature['label/image/filename'] | |
# noisy_image_data = example.features.feature['label/image/encoded'] | |
# orignal_image = sess.run(tf.image.decode_jpeg(orignal_image_data.bytes_list.value[0], channels=3)) | |
# noisy_image = sess.run(tf.image.decode_jpeg(noisy_image_data.bytes_list.value[0], channels=3)) | |
# plt.subplot(121) | |
# plt.title("Image Name : " + str(orignal_image_filename.bytes_list.value[0]) + "\n" + | |
# "Image Height : " + str(orignal_image_height.int64_list.value[0]) + "\n" + | |
# "Image Weight : " + str(orignal_image_width.int64_list.value[0]) + "\n" + | |
# "Image ColourSpace : " + str(orignal_image_colors.bytes_list.value[0]) + "\n" + | |
# "Image Channels : " + str(orignal_image_channels.int64_list.value[0]) + "\n" + | |
# "Image format : " + str(orignal_image_format.bytes_list.value[0]) + "\n") | |
# plt.imshow(orignal_image) | |
# plt.subplot(122) | |
# plt.title("Image Name : " + str(noisy_image_filename.bytes_list.value[0]) + "\n" + | |
# "Image Height : " + str(noisy_image_height.int64_list.value[0]) + "\n" + | |
# "Image Weight : " + str(noisy_image_width.int64_list.value[0]) + "\n" + | |
# "Image ColourSpace : " + str(noisy_image_colors.bytes_list.value[0]) + "\n" + | |
# "Image Channels : " + str(noisy_image_channels.int64_list.value[0]) + "\n" + | |
# "Image format : " + str(noisy_image_format.bytes_list.value[0]) + "\n") | |
# plt.imshow(noisy_image) | |
# plt.show() | |
# break |
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