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ElDeveloper / the-future-of-data-analysis-john-tukey.md
Last active August 29, 2015 14:05
The Future of Data Analysis - John Tukey

We should seek out unfamiliar summaries of observational material, and establish their useful properties. - John Tukey.

If data analysis is to be helpful and useful it must be practiced. - John Tukey.

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@ElDeveloper
ElDeveloper / bell_labs.md
Last active August 29, 2015 14:03
The idea factory bell labs and the great age of american innovation - Jon Gertner

Notes from: The Idea Factory: Bell Labs and the Great Age of American Innovation

Theres is always a larger volume of work that is worth doing than can be done currently - Mervin Kelly.

"One policy, one system, universal service." Theodore Vail.

And so Townes sat on the Mexico City train in third class in the summer of 1939, "on slatted wood benches that were non too comfortable, and played a Nazi's accordion and sang songs with Mexican fruit pickers on their way home from the fields in the United States." He felt nervous about eating the local food at the stops--mostly he was afraid of dysentery--and for two days he lived on bottled beer.

"Science had no true owners, only partcipants and contributors" - Mervin Kelly.

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>>> from skbio.core.tree import TreeNode
>>> tr = TreeNode.from_newick("(((A:.1,B:1.2)C:.6,(D:.9,E:.6)F:.9)"
... "G:2.4,(H:.4,I:.5)J:1.3)K;")
>>> tdbl = tr.descending_branchlength()
>>> sdbl = tr.descending_branchlength(['A','E'])
>>> print tdbl, sdbl
8.9 4.6
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# qiime_config
# WARNING: DO NOT EDIT OR DELETE Qiime/qiime/support_files/qiime_config
# To overwrite defaults, copy this file to $HOME/.qiime_config or a full path
# specified by $QIIME_CONFIG_FP and edit that copy of the file.
# Find details on this file at http://qiime.org/install/qiime_config.html
cluster_jobs_fp
python_exe_fp python
working_dir
blastmat_dir
@ElDeveloper
ElDeveloper / Emperor 0.9.1
Created October 22, 2013 05:21
Pull requests and issues closed in the development cycle for emperor between 0.9.0 and 0.9.1.
.. _github-stats:
Github stats
============
GitHub stats for 2013/05/14 - 2013/10/21 (tag: 0.9.0)
These lists are automatically generated, and may be incomplete or contain duplicates.
The following 4 authors contributed 220 commits.
LOG ======= File Transfer statistics =======
LOG ------- Source statistics -------
LOG Source argument scans attempted : 917
LOG - Source argument scans completed : 917
LOG Source path scans attempted : 917
LOG - Source path scans failed : 0
LOG - Source path scans skipped since irregular : 0
LOG - Source path scans excluded : 0
LOG - Source directory scans completed : 0
LOG - Source file scans completed : 917
@ElDeveloper
ElDeveloper / gist:5577772
Created May 14, 2013 17:23
QIIME 1.7.0 stats.

Github stats

GitHub stats (generated with Matplotlib's github_stats.py) for 2012/12/18 - 2013/05/14 (tag: 1.6.0)

These lists are automatically generated, and may be incomplete or contain duplicates.

The following 21 authors contributed 988 commits.

  • Adam Robbins-Pianka