GORKA BUENVARON CAMPO GBuenvar

PhD student at University of Balearic Island

GBuenvar / network_motif_counter.py

Last active December 12, 2024 11:12 — forked from tpoisot/network_motif_counter.py

Original from https://gist.github.com/tpoisot/8582648. Update the counter to the last version of python available, 3.13. Find it super useful.

	import networkx as nx
	import numpy as np
	import itertools

	# We define each S* motif as a directed graph in networkx
	motifs = {
	'S1': nx.DiGraph([(1, 2), (2, 3)]),
	'S2': nx.DiGraph([(1, 2), (1, 3), (2, 3)]),
	'S3': nx.DiGraph([(1, 2), (2, 3), (3, 1)]),
	'S4': nx.DiGraph([(1, 2), (3, 2)]),