Website: https://www.tidyverse.org/packages/
Comparison of dplyr
and base
functions: https://cran.r-project.org/web/packages/dplyr/vignettes/base.html
Piping:
library(dplyr)
// ==UserScript== | |
// @name Twitter Promoted | |
// @namespace http://tampermonkey.net/ | |
// @version 0.2 | |
// @description Get rid of stupid promoted tweets | |
// @author Mac Gaulin | |
// @match http*://twitter.com/* | |
// @grant none | |
// ==/UserScript== |
Website: https://www.tidyverse.org/packages/
Comparison of dplyr
and base
functions: https://cran.r-project.org/web/packages/dplyr/vignettes/base.html
Piping:
library(dplyr)
// ==UserScript== | |
// @name Clean Pubmed Search Links | |
// @namespace https://github.com/ndefrancesco | |
// @version 1.0 | |
// @author Nicolás De Francesco | |
// @include https://pubmed.ncbi.nlm.nih.gov/* | |
// @include http://pubmed.ncbi.nlm.nih.gov/* | |
// @require http://ajax.googleapis.com/ajax/libs/jquery/1.8.3/jquery.min.js | |
// ==/UserScript== |
This guide assumes you're working on a Unix-like environment. I'm using Linux Mint (Ubuntu). It should work on Macs, and might on Windows.
These are the four steps you can use as a checklist, see the headings below for the details on each step.
~/.authinfo.gpg
*bcftools filter | |
*Filter variants per region (in this example, print out only variants mapped to chr1 and chr2) | |
qbcftools filter -r1,2 ALL.chip.omni_broad_sanger_combined.20140818.snps.genotypes.hg38.vcf.gz | |
*printing out info for only 2 samples: | |
bcftools view -s NA20818,NA20819 filename.vcf.gz | |
*printing stats only for variants passing the filter: | |
bcftools view -f PASS filename.vcf.gz |