slowkow

# install.packages(c("Matrix", "rhdf5", "tidyverse"))
library(Matrix)
library(rhdf5)
library(tidyverse)
library(glue)

my_h5_files <- Sys.glob(
  "path/to/cellranger-per-channel/output/*/filtered_feature_bc_matrix.h5"
)

stephenra

# Easy extraction for a number of archive formats
extract () {
   if [ -f $1 ] ; then
       case $1 in
           *.tar.bz2)   tar xvjf $1    ;;
           *.tar.gz)    tar xvzf $1    ;;
           *.bz2)       bunzip2 $1     ;;
           *.rar)       unrar x $1       ;;
           *.gz)        gunzip $1      ;;
           *.tar)       tar xvf $1     ;;

slowkow

#!/usr/bin/env bash
# pdfoptim.sh
#
# Optimize a PDF with Ghostscript
#
# Usage: bash pdfoptim.sh FILE.pdf
#
# This will copy the input file to FILE-original.pdf
# And write an optimized file to FILE.pdf
#

gungorbudak

'use strict';

(function(exports) {

    var rank = {
        /*
         * Standart ranking
         *
         * The MIT License, Copyright (c) 2014 Ben Magyar
         */

slowkow

#!/usr/bin/env bash
# make_aspera_manifest.sh
# Kamil Slowikowski
#
# Make a manifest file suitable for Aspera.
#
# Example
# -------
#
# Suppose we wish to send a folder full of files called "data". We want

casallas

To install

1. Install jags: in the terminal using homebrew brew install jags
2. Install rjags: in R

install.packages("rjags")
library(rjags)

Potential issues

stevenworthington

# ipak function: install and load multiple R packages.
# check to see if packages are installed. Install them if they are not, then load them into the R session.

ipak <- function(pkg){
    new.pkg <- pkg[!(pkg %in% installed.packages()[, "Package"])]
    if (length(new.pkg)) 
        install.packages(new.pkg, dependencies = TRUE)
    sapply(pkg, require, character.only = TRUE)
}

Phrogz

// http://phrogz.net/SVG/convert_path_to_polygon.xhtml
function pathToPolygon(path,samples){
  if (!samples) samples = 0;
  var doc = path.ownerDocument;
  var poly = doc.createElementNS('http://www.w3.org/2000/svg','polygon');

  // Put all path segments in a queue
  for (var segs=[],s=path.pathSegList,i=s.numberOfItems-1;i>=0;--i) segs[i] = s.getItem(i);
  var segments = segs.concat();