install_github debugging (conda info, conda list, etc.)

gistfile1.txt

# https://github.com/conda-forge/r-devtools-feedstock/issues/4#issuecomment-426390936
(xenial)maxghenis@localhost:~$ conda info

     active environment : None
       user config file : /home/maxghenis/.condarc
 populated config files : 
          conda version : 4.5.11
    conda-build version : not installed
         python version : 3.6.6.final.0
       base environment : /home/maxghenis/miniconda3  (writable)
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/free/linux-64
                          https://repo.anaconda.com/pkgs/free/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
                          https://repo.anaconda.com/pkgs/pro/linux-64
                          https://repo.anaconda.com/pkgs/pro/noarch
          package cache : /home/maxghenis/miniconda3/pkgs
                          /home/maxghenis/.conda/pkgs
       envs directories : /home/maxghenis/miniconda3/envs
                          /home/maxghenis/.conda/envs
               platform : linux-64
             user-agent : conda/4.5.11 requests/2.19.1 CPython/3.6.6 Linux/4.4.141-14563-g78fd9f781aae ubuntu/16.04 glibc/2.23
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False
           
           
name: root
channels:
  - ospc
  - gerrymandr
  - anaconda
  - conda-forge
  - r
  - defaults
dependencies:
  - font-ttf-dejavu-sans-mono=2.37=h6964260_0
  - font-ttf-inconsolata=2.001=hcb22688_0
  - font-ttf-source-code-pro=2.030=h7457263_0
  - font-ttf-ubuntu=0.83=h8b1ccd4_0
  - fonts-anaconda=1=h8fa9717_0
  - git=2.17.1=pl526hb37396a_0
  - mkl=2018.0.3=1
  - perl=5.26.2=h14c3975_0
  - pip=10.0.1=py36_0
  - appdirs=1.4.3=py_1
  - asn1crypto=0.24.0=py_1
  - attrs=18.1.0=py_1
  - automat=0.7.0=py36_0
  - backcall=0.1.0=py_0
  - bleach=2.1.3=py_0
  - cffi=1.11.5=py36_0
  - chardet=3.0.4=py36_2
  - constantly=15.1.0=py_0
  - cryptography=2.2.1=py36hdffb7b8_1
  - dbus=1.13.0=h3a4f0e9_0
  - decorator=4.3.0=py_0
  - entrypoints=0.2.3=py36_1
  - fontconfig=2.13.0=h074f895_2
  - freetype=2.8.1=0
  - gettext=0.19.8.1=0
  - gnutls=3.5.17=0
  - gsl=2.1=2
  - html5lib=1.0.1=py_0
  - hyperlink=17.3.1=py_0
  - idna=2.7=py36_2
  - incremental=17.5.0=py_0
  - ipykernel=4.8.2=py36_0
  - ipython=6.4.0=py36_0
  - ipython_genutils=0.2.0=py_1
  - ipywidgets=7.2.1=py36_1
  - jedi=0.12.1=py36_0
  - jinja2=2.10=py_1
  - jpeg=9c=h470a237_0
  - json-c=0.12.1=0
  - jsonschema=2.6.0=py36_1
  - jupyter=1.0.0=py_1
  - jupyter_client=5.2.3=py_1
  - jupyter_console=5.2.0=py36_0
  - jupyter_contrib_core=0.3.3=py_2
  - jupyter_contrib_nbextensions=0.5.0=py36_0
  - jupyter_core=4.4.0=py_0
  - jupyter_highlight_selected_word=0.2.0=py36_0
  - jupyter_latex_envs=1.4.4=py36_0
  - jupyter_nbextensions_configurator=0.4.0=py36_0
  - libevent=2.0.22=hdffb7b8_1
  - libiconv=1.15=h470a237_1
  - libidn11=1.33=0
  - libxslt=1.1.32=h88dbc4e_1
  - lxml=4.2.3=py36hc9114bc_0
  - markupsafe=1.0=py36_0
  - mistune=0.8.3=py36_1
  - nbconvert=5.3.1=py_1
  - nbformat=4.4.0=py_1
  - nettle=3.3=0
  - notebook=5.6.0=py36_0
  - pandocfilters=1.4.2=py_1
  - parso=0.3.0=py_0
  - pcre=8.39=0
  - pexpect=4.6.0=py36_0
  - pickleshare=0.7.4=py36_0
  - prometheus_client=0.2.0=py36_0
  - prompt_toolkit=1.0.15=py36_0
  - ptyprocess=0.6.0=py36_0
  - pyasn1=0.4.3=py_0
  - pyasn1-modules=0.2.1=py_0
  - pycosat=0.6.3=py36_0
  - pycparser=2.18=py_1
  - pygments=2.2.0=py_1
  - pyopenssl=18.0.0=py36_0
  - pysocks=1.6.8=py36_1
  - python-dateutil=2.7.3=py_0
  - pyzmq=17.1.0=py36hae99301_0
  - qtconsole=4.3.1=py36_0
  - r-base=3.4.1=hff14c37_5
  - r-rgdal=1.2_18=r3.4.1_0
  - requests=2.19.1=py36_1
  - ruamel_yaml=0.15.44=py36h470a237_0
  - send2trash=1.5.0=py_0
  - service_identity=17.0.0=py_0
  - setuptools=40.0.0=py36_0
  - simplegeneric=0.8.1=py_1
  - sip=4.19.8=py36_0
  - six=1.11.0=py36_1
  - terminado=0.8.1=py36_0
  - testpath=0.3.1=py36_0
  - tornado=5.1=py36_0
  - traitlets=4.3.2=py36_0
  - urllib3=1.23=py36_0
  - wcwidth=0.1.7=py_1
  - webencodings=0.5=py36_0
  - wheel=0.31.1=py36_0
  - widgetsnbextension=3.2.1=py36_0
  - xorg-fixesproto=5.0=h470a237_2
  - xorg-kbproto=1.0.7=h470a237_2
  - xorg-libice=1.0.9=h470a237_3
  - xorg-libsm=1.2.2=h470a237_3
  - xorg-libx11=1.6.5=h470a237_1
  - xorg-libxaw=1.0.13=h470a237_1
  - xorg-libxext=1.3.3=h470a237_3
  - xorg-libxfixes=5.0.3=h470a237_3
  - xorg-libxmu=1.1.2=h470a237_1
  - xorg-libxpm=3.5.12=h470a237_1
  - xorg-libxt=1.1.5=h470a237_1
  - xorg-xextproto=7.3.0=h470a237_2
  - xorg-xproto=7.0.31=h470a237_7
  - zope.interface=4.5.0=py36h470a237_0
  - _r-mutex=1.0.0=mro_2
  - binutils_impl_linux-64=2.28.1=had2808c_3
  - binutils_linux-64=7.2.0=had2808c_27
  - blas=1.0=mkl
  - bokeh=0.13.0=py36_0
  - bzip2=1.0.6=h14c3975_5
  - ca-certificates=2018.03.07=0
  - cairo=1.14.12=h77bcde2_0
  - certifi=2018.4.16=py36_0
  - conda=4.5.8=py36_0
  - conda-env=2.6.0=1
  - curl=7.60.0=h84994c4_0
  - expat=2.2.5=he0dffb1_0
  - freexl=1.0.5=h14c3975_0
  - fribidi=1.0.4=h14c3975_0
  - gcc_impl_linux-64=7.2.0=habb00fd_3
  - gcc_linux-64=7.2.0=h550dcbe_27
  - geos=3.6.2=heeff764_2
  - gfortran_impl_linux-64=7.2.0=hdf63c60_3
  - gfortran_linux-64=7.2.0=h550dcbe_27
  - giflib=5.1.4=h14c3975_1
  - glib=2.53.6=h5d9569c_2
  - gmp=6.1.2=h6c8ec71_1
  - graphite2=1.3.11=h16798f4_2
  - gst-plugins-base=1.12.4=h33fb286_0
  - gstreamer=1.12.4=hb53b477_0
  - gxx_impl_linux-64=7.2.0=hdf63c60_3
  - gxx_linux-64=7.2.0=h550dcbe_27
  - harfbuzz=1.7.6=hc5b324e_0
  - hdf4=4.2.13=h3ca952b_2
  - hdf5=1.10.1=h9caa474_1
  - icu=58.2=h9c2bf20_1
  - intel-openmp=2018.0.3=0
  - kealib=1.4.7=h79811e5_5
  - krb5=1.16.1=hc83ff2d_6
  - libboost=1.67.0=h46d08c1_4
  - libcurl=7.60.0=h1ad7b7a_0
  - libdap4=3.19.0=h6ec2957_2
  - libedit=3.1.20170329=h6b74fdf_2
  - libffi=3.2.1=hd88cf55_4
  - libgcc=7.2.0=h69d50b8_2
  - libgcc-ng=7.2.0=hdf63c60_3
  - libgdal=2.2.2=h804cdde_1
  - libgfortran-ng=7.2.0=hdf63c60_3
  - libkml=1.3.0=h590aaf7_4
  - libnetcdf=4.4.1.1=h816af47_8
  - libpng=1.6.34=hb9fc6fc_0
  - libpq=10.3=h1ad7b7a_0
  - libsodium=1.0.16=h1bed415_0
  - libspatialite=4.3.0a=h72746d6_18
  - libssh2=1.8.0=h9cfc8f7_4
  - libstdcxx-ng=7.2.0=hdf63c60_3
  - libtiff=4.0.9=he85c1e1_1
  - libuuid=1.0.3=h1bed415_2
  - libxcb=1.13=h1bed415_1
  - libxml2=2.9.8=h26e45fe_1
  - llvmlite=0.24.0=py36hdbcaa40_0
  - mkl_fft=1.0.2=py36h651fb7a_0
  - mkl_random=1.0.1=py36h4414c95_1
  - mro-base=3.4.3=h1c2f66e_0
  - mro-basics=3.4.3=0
  - ncurses=6.1=hf484d3e_0
  - numba=0.39.0=py36h04863e7_0
  - numpy=1.14.5=py36h1b885b7_4
  - numpy-base=1.14.5=py36hdbf6ddf_4
  - openjpeg=2.3.0=h05c96fa_1
  - openssl=1.0.2o=h20670df_0
  - packaging=17.1=py36_0
  - pandas=0.23.3=py36h04863e7_0
  - pandoc=2.2.1=h629c226_0
  - pango=1.42.0=h377f3fa_0
  - pixman=0.34.0=hceecf20_3
  - poppler=0.60.1=hc909a00_0
  - poppler-data=0.4.9=0
  - proj4=4.9.3=hc8507d1_7
  - pyparsing=2.2.0=py36_1
  - pyqt=5.9.2=py36h751905a_0
  - python=3.6.6=hc3d631a_0
  - pytz=2018.5=py36_0
  - pyyaml=3.12=py36h14c3975_1
  - qt=5.9.4=h4e5bff0_0
  - r=3.4.3=mro343_0
  - r-assertthat=0.2.0=mro343h889e2dd_0
  - r-bh=1.65.0_1=mro343h889e2dd_0
  - r-bindr=0.1=mro343h889e2dd_0
  - r-bindrcpp=0.2=mro343h599a50d_0
  - r-bitops=1.0_6=mro343h086d26f_0
  - r-boot=1.3_20=mro343_0
  - r-cairo=1.5_9=mro343h086d26f_0
  - r-checkpoint=0.4.3=mro343_0
  - r-class=7.3_14=mro343_0
  - r-classint=0.1_24=mro343h4829c52_0
  - r-cli=1.0.0=mro343h889e2dd_0
  - r-cluster=2.0.6=mro343_0
  - r-codetools=0.2_15=mro343_0
  - r-crayon=1.3.4=mro343h889e2dd_0
  - r-curl=3.1=mro343_0
  - r-dbi=0.7=mro343h889e2dd_0
  - r-deployrrserve=9.0.0=mro343_0
  - r-doparallel=1.0.12=mro343_0
  - r-dplyr=0.7.4=mro343h599a50d_0
  - r-e1071=1.6_8=mro343h599a50d_0
  - r-foreach=1.4.5=mro343_0
  - r-foreign=0.8_69=mro343_0
  - r-glue=1.2.0=mro343h086d26f_0
  - r-gridextra=2.3=mro343h889e2dd_0
  - r-hms=0.4.0=mro343h889e2dd_0
  - r-httr=1.3.1=mro343h889e2dd_0
  - r-iterators=1.0.9=mro343_0
  - r-jsonlite=1.5=mro343_0
  - r-kernsmooth=2.23_15=mro343_0
  - r-lattice=0.20_35=mro343_0
  - r-magrittr=1.5=mro343h889e2dd_0
  - r-maptools=0.9_2=mro343h086d26f_0
  - r-mass=7.3_47=mro343_0
  - r-matrix=1.2_12=mro343_0
  - r-mgcv=1.8_22=mro343_0
  - r-microsoftr=3.4.3.0097=mro343_0
  - r-mime=0.5=mro343h086d26f_0
  - r-nlme=3.1_131=mro343_0
  - r-nnet=7.3_12=mro343_0
  - r-openssl=0.9.9=mro343h086d26f_0
  - r-pillar=1.0.1=mro343h889e2dd_0
  - r-pkgconfig=2.0.1=mro343h889e2dd_0
  - r-plogr=0.1_1=mro343h889e2dd_0
  - r-png=0.1_7=mro343_0
  - r-purrr=0.2.4=mro343h086d26f_0
  - r-r6=2.2.2=mro343_0
  - r-rappdirs=0.3.1=mro343h086d26f_0
  - r-rcpp=0.12.14=mro343h599a50d_0
  - r-rcurl=1.95_4.9=mro343h086d26f_0
  - r-readr=1.1.1=mro343h599a50d_0
  - r-recommended=3.4.3=mro343_0
  - r-revoioq=8.0.9=mro343_0
  - r-revomods=11.0.0=mro343_0
  - r-rlang=0.1.6=mro343h086d26f_0
  - r-rpart=4.1_11=mro343_0
  - r-runit=0.4.26=mro343_0
  - r-rvest=0.3.2=mro343h889e2dd_0
  - r-selectr=0.3_1=mro343h889e2dd_0
  - r-sf=0.5_5=mro343h599a50d_0
  - r-sp=1.2_5=mro343h086d26f_0
  - r-spatial=7.3_11=mro343_0
  - r-stringi=1.1.6=mro343h599a50d_0
  - r-stringr=1.2.0=mro343h889e2dd_0
  - r-survival=2.41_3=mro343_0
  - r-tibble=1.4.1=mro343h086d26f_0
  - r-tidyr=0.7.2=mro343h599a50d_0
  - r-tidyselect=0.2.3=mro343h599a50d_0
  - r-udunits2=0.13=mro343h086d26f_0
  - r-units=0.4_6=mro343h889e2dd_0
  - r-utf8=1.1.2=mro343h086d26f_0
  - r-uuid=0.1_2=mro343h086d26f_0
  - r-xml2=1.1.1=mro343h599a50d_0
  - readline=7.0=ha6073c6_4
  - sqlite=3.24.0=h84994c4_0
  - tk=8.6.7=hc745277_3
  - toolz=0.9.0=py36_0
  - twisted=17.5.0=py36_0
  - udunits2=2.2.25=hd30922c_1
  - xerces-c=3.2.1=hac72e42_0
  - xz=5.2.4=h14c3975_4
  - yaml=0.1.7=had09818_2
  - zeromq=4.2.5=hf484d3e_0
  - zlib=1.2.11=ha838bed_2
  - zope=1.0=py36_0
  - r-tidycensus=0.4.6=mro343h6115d3f_0
  - r-tigris=0.7=mro343h6115d3f_0
  - taxcalc=0.20.1=py36_0
  - r-backports=1.1.2=mro343h086d26f_0
  - r-base64enc=0.1_3=mro343h086d26f_0
  - r-broom=0.4.3=mro343h889e2dd_0
  - r-callr=1.0.0=mro343h889e2dd_0
  - r-cellranger=1.1.0=mro343h889e2dd_0
  - r-clipr=0.4.0=mro343h889e2dd_0
  - r-colorspace=1.3_2=mro343h086d26f_0
  - r-cvst=0.2_1=mro343h889e2dd_0
  - r-data.table=1.10.4_3=mro343h086d26f_0
  - r-dbplyr=1.1.0=mro343h889e2dd_0
  - r-ddalpha=1.3.1=mro343h44b0c2a_0
  - r-deoptimr=1.0_8=mro343h889e2dd_0
  - r-dichromat=2.0_0=mro343h889e2dd_0
  - r-digest=0.6.13=mro343h086d26f_0
  - r-dimred=0.1.0=mro343h889e2dd_0
  - r-drr=0.0.2=mro343h889e2dd_0
  - r-evaluate=0.10.1=mro343h889e2dd_0
  - r-forcats=0.2.0=mro343h889e2dd_0
  - r-formatr=1.5=mro343h889e2dd_0
  - r-ggplot2=2.2.1=mro343h889e2dd_0
  - r-glmnet=2.0_13=mro343h4829c52_0
  - r-gower=0.1.2=mro343h086d26f_0
  - r-gtable=0.2.0=mro343h889e2dd_0
  - r-haven=1.1.0=mro343h599a50d_0
  - r-hexbin=1.27.1=mro343h4829c52_0
  - r-highr=0.6=mro343h889e2dd_0
  - r-htmltools=0.3.6=mro343h599a50d_0
  - r-htmlwidgets=0.9=mro343h889e2dd_0
  - r-httpuv=1.3.5=mro343h599a50d_0
  - r-ipred=0.9_6=mro343h086d26f_0
  - r-irdisplay=0.4.4=mro343h889e2dd_0
  - r-irkernel=0.8.11=mro343_0
  - r-kernlab=0.9_25=mro343h44b0c2a_0
  - r-knitr=1.18=mro343h889e2dd_0
  - r-labeling=0.3=mro343h889e2dd_0
  - r-lava=1.5.1=mro343h889e2dd_0
  - r-lazyeval=0.2.1=mro343h086d26f_0
  - r-lubridate=1.7.1=mro343h599a50d_0
  - r-maps=3.2.0=mro343h086d26f_0
  - r-markdown=0.8=mro343h086d26f_0
  - r-mnormt=1.5_5=mro343h4829c52_0
  - r-modelmetrics=1.1.0=mro343h599a50d_0
  - r-modelr=0.1.1=mro343h889e2dd_0
  - r-munsell=0.4.3=mro343h889e2dd_0
  - r-numderiv=2016.8_1=mro343h889e2dd_0
  - r-pbdzmq=0.2_6=mro343h599a50d_1
  - r-plyr=1.8.4=mro343h599a50d_0
  - r-prodlim=1.6.1=mro343h599a50d_0
  - r-psych=1.7.8=mro343h889e2dd_0
  - r-quantmod=0.4_12=mro343h889e2dd_0
  - r-randomforest=4.6_12=mro343h4829c52_0
  - r-rcolorbrewer=1.1_2=mro343h889e2dd_0
  - r-rcpproll=0.2.2=mro343h599a50d_0
  - r-readxl=1.0.0=mro343h599a50d_0
  - r-recipes=0.1.1=mro343h889e2dd_0
  - r-rematch=1.0.1=mro343h889e2dd_0
  - r-repr=0.12.0=mro343h889e2dd_0
  - r-reprex=0.1.1=mro343h889e2dd_0
  - r-reshape2=1.4.3=mro343h599a50d_0
  - r-revoutilsmath=10.0.1=mro343_0
  - r-rmarkdown=1.8=mro343h889e2dd_0
  - r-robustbase=0.92_8=mro343h4829c52_0
  - r-rprojroot=1.3_1=mro343h889e2dd_0
  - r-rstudioapi=0.7=mro343h889e2dd_0
  - r-scales=0.5.0=mro343h599a50d_0
  - r-sfsmisc=1.1_1=mro343h889e2dd_0
  - r-shiny=1.0.5=mro343h889e2dd_0
  - r-sourcetools=0.1.6=mro343h599a50d_0
  - r-timedate=3042.101=mro343h889e2dd_0
  - r-ttr=0.23_2=mro343h4829c52_0
  - r-viridis=0.4.0=mro343h889e2dd_0
  - r-viridislite=0.2.0=mro343h889e2dd_0
  - r-whisker=0.3_2=mro343h889e2dd_0
  - r-withr=2.1.1=mro343h889e2dd_0
  - r-xtable=1.8_2=mro343h889e2dd_0
  - r-xts=0.10_1=mro343h4829c52_0
  - r-yaml=2.1.16=mro343h086d26f_0
  - r-zoo=1.8_0=mro343h086d26f_0
prefix: /home/maxghenis/miniconda3

(xenial)maxghenis@localhost:~$ R

R version 3.4.1 (2017-06-30) -- "Single Candle"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Microsoft R Open 3.4.1
The enhanced R distribution from Microsoft
Microsoft packages Copyright (C) 2017 Microsoft Corporation

Using the Intel MKL for parallel mathematical computing (using 2 cores).

Default CRAN mirror snapshot taken on 2018-01-01.
See: https://mran.microsoft.com/.

During startup - Warning message:
package 'RevoUtils' was built under R version 3.4.3 
> sessionInfo()
R version 3.4.1 (2017-06-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.5 LTS

Matrix products: default
BLAS: /home/maxghenis/miniconda3/lib/R/lib/libRblas.so
LAPACK: /home/maxghenis/miniconda3/lib/R/lib/libRlapack.so

locale:
[1] C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] RevoUtils_10.0.8     RevoUtilsMath_10.0.1

loaded via a namespace (and not attached):
[1] compiler_3.4.1

> getOption("unzip")
[1] ""
> Sys.getenv("TAR")
[1] "/bin/gtar"