Nanguage’s gists

Nanguage / run_bioengine_model.py

Created March 29, 2024 17:21

	import micropip
	await micropip.install(['imjoy-rpc', 'kaibu-utils', 'pyodide-http', 'requests', 'numpy'])
	# Patch requests
	import pyodide_http
	pyodide_http.patch_all() # Patch all libraries

	import numpy as np
	import matplotlib.pyplot as plt
	from imjoy_rpc.hypha import connect_to_server
	from kaibu_utils import fetch_image

Nanguage / bwc-chatbot-extension.imjoy.html

Last active February 10, 2024 18:20

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "chatbot-bioengine-client",
	"type": "web-worker",
	"tags": [],
	"ui": "",

Nanguage / test-triton-launcher.py

Last active March 14, 2024 00:12

	import numpy as np
	import micropip
	await micropip.install(['imjoy-rpc', 'kaibu-utils', 'pyodide-http', 'requests'])
	# Patch requests
	import pyodide_http
	pyodide_http.patch_all() # Patch all libraries

	import matplotlib.pyplot as plt
	from imjoy_rpc.hypha import connect_to_server
	from kaibu_utils import fetch_image

Nanguage / sam-kaibu.imjoy.html

Created January 25, 2024 20:57

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "SAM-Kaibu",
	"type": "iframe",
	"tags": [],
	"ui": "",

Nanguage / test-esam-http.py

Created January 19, 2024 15:27

	"""Test the triton server proxy."""
	from PIL import Image
	import msgpack
	import numpy as np
	import requests
	import gzip
	import json

	def get_config(server_url, model_name):
	response = requests.get(

Nanguage / bioengine_efficientsam_demo.py

Last active January 19, 2024 11:04

	import micropip
	await micropip.install(["pyotritonclient", "kaibu-utils", "pyodide-http", "requests"])

	import pyodide_http
	pyodide_http.patch_all() # Patch all libraries

	from kaibu_utils import fetch_image
	import matplotlib.pyplot as plt
	import numpy as np
	from pyotritonclient import execute

Nanguage / test_bioengine_cellpose.py

Last active January 15, 2024 22:26

	import micropip
	await micropip.install("kaibu-utils")
	import pyodide_http
	pyodide_http.patch_all()
	from kaibu_utils import fetch_image

	image = await fetch_image('https://zenodo.org/api/records/6647674/files/sample_input_0.tif/content')
	ij = await api.createWindow(src = "https://ij.imjoy.io/", name="ImageJ.JS")
	client = await api.createWindow("https://bioimage-io.github.io/bioengine-web-client/")
	await client.waitForReady()

Nanguage / chatbot-launcher.imjoy.html

Created December 23, 2023 20:25

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "Chatbot launcher",
	"type": "web-worker",
	"tags": [],
	"ui": "",

Nanguage / Ramen_analysis.ipynb

Last active November 10, 2023 23:31

Code for analysis MiP-Seq plus Ca image and Ramen image

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Nanguage / model_interface_panel.md

Last active September 7, 2023 03:50

api.createWindow({src: "https://gist.githubusercontent.com/Nanguage/27a003bec90ee8fdd29859cb446c608d/raw/61cf6dd384998002a33336ca0018373c217ed61d/mi_panel.imjoy.html", data: {id: ${id}}})

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