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Nanguage/test_bioengine_cellpose.py

Last active January 15, 2024 22:26
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test_bioengine_cellpose.py
import micropip
await micropip.install("kaibu-utils")
import pyodide_http
pyodide_http.patch_all()
from kaibu_utils import fetch_image
image = await fetch_image('https://zenodo.org/api/records/6647674/files/sample_input_0.tif/content')
ij = await api.createWindow(src = "https://ij.imjoy.io/", name="ImageJ.JS")
client = await api.createWindow("https://bioimage-io.github.io/bioengine-web-client/")
await client.waitForReady()
await client.setModel("Cellpose")
await ij.viewImage(image)
await client.setParameters({ "diameter": 10, "model_type": "cyto", "do_3D": True })
await client.runModel()
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