api.createWindow({src: "https://gist.githubusercontent.com/Nanguage/27a003bec90ee8fdd29859cb446c608d/raw/61cf6dd384998002a33336ca0018373c217ed61d/mi_panel.imjoy.html", data: {id: ${id}}})
Weize Nanguage
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| <docs lang="markdown"> | |
| The panel for upload the image file. | |
| </docs> | |
| <config lang="json"> | |
| { | |
| "name": "upload-panel", | |
| "type": "window", | |
| "tags": [], | |
| "ui": "", |
Nanguage
/ mi_core.imjoy.html
Last active
July 20, 2023 09:40
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| <config lang="json"> | |
| { | |
| "name": "mi-core", | |
| "type": "web-python", | |
| "tags": [], | |
| "flags": [], | |
| "ui": "", | |
| "version": "0.1.0", | |
| "cover": "", | |
| "description": "Connect to the bioengine server, and execute operations.", |
Nanguage
/ model_interface_panel.md
Last active
September 7, 2023 03:50
Nanguage
/ Ramen_analysis.ipynb
Last active
November 10, 2023 23:31
Code for analysis MiP-Seq plus Ca image and Ramen image
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Nanguage
/ chatbot-launcher.imjoy.html
Created
December 23, 2023 20:25
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| <docs> | |
| [TODO: write documentation for this plugin.] | |
| </docs> | |
| <config lang="json"> | |
| { | |
| "name": "Chatbot launcher", | |
| "type": "web-worker", | |
| "tags": [], | |
| "ui": "", |
Nanguage
/ test_bioengine_cellpose.py
Last active
January 15, 2024 22:26
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| import micropip | |
| await micropip.install("kaibu-utils") | |
| import pyodide_http | |
| pyodide_http.patch_all() | |
| from kaibu_utils import fetch_image | |
| image = await fetch_image('https://zenodo.org/api/records/6647674/files/sample_input_0.tif/content') | |
| ij = await api.createWindow(src = "https://ij.imjoy.io/", name="ImageJ.JS") | |
| client = await api.createWindow("https://bioimage-io.github.io/bioengine-web-client/") | |
| await client.waitForReady() |
Nanguage
/ bioengine_efficientsam_demo.py
Last active
January 19, 2024 11:04
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| import micropip | |
| await micropip.install(["pyotritonclient", "kaibu-utils", "pyodide-http", "requests"]) | |
| import pyodide_http | |
| pyodide_http.patch_all() # Patch all libraries | |
| from kaibu_utils import fetch_image | |
| import matplotlib.pyplot as plt | |
| import numpy as np | |
| from pyotritonclient import execute |
Nanguage
/ test-esam-http.py
Created
January 19, 2024 15:27
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| """Test the triton server proxy.""" | |
| from PIL import Image | |
| import msgpack | |
| import numpy as np | |
| import requests | |
| import gzip | |
| import json | |
| def get_config(server_url, model_name): | |
| response = requests.get( |
Nanguage
/ sam-kaibu.imjoy.html
Created
January 25, 2024 20:57
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| <docs> | |
| [TODO: write documentation for this plugin.] | |
| </docs> | |
| <config lang="json"> | |
| { | |
| "name": "SAM-Kaibu", | |
| "type": "iframe", | |
| "tags": [], | |
| "ui": "", |
Nanguage
/ test-triton-launcher.py
Last active
March 14, 2024 00:12
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| import numpy as np | |
| import micropip | |
| await micropip.install(['imjoy-rpc', 'kaibu-utils', 'pyodide-http', 'requests']) | |
| # Patch requests | |
| import pyodide_http | |
| pyodide_http.patch_all() # Patch all libraries | |
| import matplotlib.pyplot as plt | |
| from imjoy_rpc.hypha import connect_to_server | |
| from kaibu_utils import fetch_image |