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Ariel Balter abalter

  • Center For Health Systems Effectiveness, OHSU
  • Portland, OR
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@m14t
m14t / fix_github_https_repo.sh
Created July 5, 2012 21:57
Convert HTTPS github clones to use SSH
#/bin/bash
#-- Script to automate https://help.github.com/articles/why-is-git-always-asking-for-my-password
REPO_URL=`git remote -v | grep -m1 '^origin' | sed -Ene's#.*(https://[^[:space:]]*).*#\1#p'`
if [ -z "$REPO_URL" ]; then
echo "-- ERROR: Could not identify Repo url."
echo " It is possible this repo is already using SSH instead of HTTPS."
exit
fi
@hieblmedia
hieblmedia / .gitignore
Last active September 11, 2024 13:03
Gitignore - Exclude all except specific subdirectory
#
# If all files excluded and you will include only specific sub-directories
# the parent path must matched before.
#
/**
!/.gitignore
###############################
# Un-ignore the affected subdirectory
@Pakillo
Pakillo / Rmarkdown-fontsize.Rmd
Created January 22, 2015 22:32
Changing font sizes of HTML ouput in Rmarkdown
---
title: "Untitled"
author: "Francisco Rodriguez-Sanchez"
date: "Thursday, January 22, 2015"
output: html_document
---
<style type="text/css">
body, td {
@josephhainline
josephhainline / convert_github_md_to_gitlab_format.sh
Created May 10, 2015 02:30
If you have repos in github that you'd like to port to gitlab, with all branches and tags, this will do it. If you want to port your wikis too, this will also work, although it's only a 90% solution for wikis. Github and gitlab use different file name and markdown conventions. Run the command port_repos_and_wikis_from_github_to_gitlab.sh to get …
#!/bin/bash
echo
echo "Processing all *.md files in current directory..."
echo
# Loop through all .md files in directory and rename spaces to dashes
for file in *" "*; do
echo "Renaming $file"
mv -- "$file" "${file// /-}"
Automate Chunks of Analysis in R Markdown
========================================================
```{r setup, echo=FALSE}
library(knitr)
library(DT)
```
```{r create-datasets, echo=FALSE}
@dannvix
dannvix / es6-tagged-template.js
Created July 13, 2015 14:22
Python-like template string in ECMAScript 6
// Python-like template string in ECMAScript 6 "tagged template"
// inspired from http://stackoverflow.com/a/22619256
function formatter(literals, ...substitutions) {
return {
format: function() {
let out = [], i = 0, k = 0;
for (i,k; i < literals.length; i++) {
out[k++] = literals[i];
out[k++] = Number.isInteger(substitutions[i]) ?
arguments[substitutions[i]] :
@conormm
conormm / r-to-python-data-wrangling-basics.md
Last active September 24, 2024 04:20
R to Python: Data wrangling with dplyr and pandas

R to python data wrangling snippets

The dplyr package in R makes data wrangling significantly easier. The beauty of dplyr is that, by design, the options available are limited. Specifically, a set of key verbs form the core of the package. Using these verbs you can solve a wide range of data problems effectively in a shorter timeframe. Whilse transitioning to Python I have greatly missed the ease with which I can think through and solve problems using dplyr in R. The purpose of this document is to demonstrate how to execute the key dplyr verbs when manipulating data using Python (with the pandas package).

dplyr is organised around six key verbs:

@ramhiser
ramhiser / character2factor.r
Created February 10, 2017 19:13
Convert all character columns to factors using dplyr in R
library(dplyr)
iris_char <- iris %>%
mutate(Species=as.character(Species),
char_column=sample(letters[1:5], nrow(iris), replace=TRUE))
sum(sapply(iris_char, is.character)) # 2
iris_factor <- iris_char %>%
mutate_if(sapply(iris_char, is.character), as.factor)
# Sepal.Length Sepal.Width Petal.Length Petal.Width Species char_column
# "numeric" "numeric" "numeric" "numeric" "character" "character"
@simecek
simecek / rmagic_example.ipynb
Last active January 16, 2021 13:29
How to add R code to your (IPython) Jupyter Notebook
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@Mukei
Mukei / conda_environment_rename.sh
Created November 30, 2017 07:01
How to rename a conda environment (workaround)
#One workaround is to create clone environment, and then remove original one:
#(remember about deactivating current environment with deactivate on Windows and source deactivate on macOS/Linux)
conda create --name new_name --clone old_name --offline #use --offline flag to disable the redownload of all your packages
conda remove --name old_name --all # or its alias: `conda env remove --name old_name`
#There are several drawbacks of this method:
# time consumed on copying environment's files,
# temporary double disk usage.