Resolving missing link to libcrypto openssl on OSX from: http://stackoverflow.com/questions/38670295/brew-refusing-to-link-openssl
brew update
brew install openssl
ln -s /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib /usr/local/lib/
ln -s /usr/local/opt/openssl/lib/libssl.1.0.0.dylib /usr/local/lib/
If you are using a conda env, simply use
conda install -c bioconda samtools openssl=1.0
thanks
For compilers to find [email protected] you may need to set:
export LDFLAGS="-L/usr/local/opt/[email protected]/lib"
export CPPFLAGS="-I/usr/local/opt/[email protected]/include"
when you perform this export commands in the terminal above issue got resolved for me.
is there a way to make this work on M1 Macs with BigSur?
Yes please :(
is there a way to make this work on M1 Macs with BigSur?
me too! Although I'm using an Intel core desktop with BigSur. I'm hesitant to downgrade.
In M1 chip computers, the installations are placed in /opt/homebrew/opt instead of /usr/local/opt.
So we should use the following:
export LDFLAGS="-L/opt/homebrew/opt/curl/lib -L/opt/homebrew/opt/openssl/lib"
export CPPFLAGS="-I/opt/homebrew/opt/curl/include -I/user/local/opt/openssl/include"
<CrowleyRajapakse commented on 22 Apr>
For compilers to find [email protected] you may need to set:
export LDFLAGS="-L/usr/local/opt/[email protected]/lib"
export CPPFLAGS="-I/usr/local/opt/[email protected]/include"
👍
thanks, it work for me
this command solve my problem on github CI job:
cp /usr/local/opt/[email protected]/lib/pkgconfig/*.pc /usr/local/lib/pkgconfig/
On M1 seems like I can make to with $ ln -s /opt/homebrew/opt/openssl\@1.1/lib/pkgconfig/libcrypto.pc /usr/local/lib/pkgconfig/libcrypto.pc
@elfgoh thanks, this worked for me!
In M1 chip computers, the installations are placed in
/opt/homebrew/optinstead of/usr/local/opt. So we should use the following:export LDFLAGS="-L/opt/homebrew/opt/curl/lib -L/opt/homebrew/opt/openssl/lib" export CPPFLAGS="-I/opt/homebrew/opt/curl/include -I/user/local/opt/openssl/include"
Thank you very much 🙏
for what it's worth, I got through a compile (v2.48) with:
./configure LDFLAGS=-L/opt/homebrew/lib/ CFLAGS="-I/opt/homebrew/include"
on my M1 mac. Zero symlinks or copying of files!
Great work - but when I try the app (after giving it permission etc) - I get the following error popup:
Unable to load OpenSSL library files: libssl.1.1.dylib and libcrypto.1.1.dylib