Prepare the database:
mkdir ecoli_many_sigs
cd ecoli_many_sigs
curl -O -L https://github.com/dib-lab/sourmash/raw/master/data/eschericia-sigs.tar.gz
tar xzf eschericia-sigs.tar.gz
cd ../
| library(ggplot2) | |
| library(tibble) | |
| library(ggthemr) | |
| setwd(dirname(rstudioapi::getActiveDocumentContext()$path)) | |
| # rm(list = ls()) | |
| ggthemr('pale', | |
| layout = 'scientific', | |
| spacing = 2, | |
| type = 'inner') |
| #pragma once | |
| #include <boost/algorithm/string.hpp> | |
| #include <boost/algorithm/string_regex.hpp> | |
| #include <boost/iostreams/filtering_streambuf.hpp> | |
| #include <boost/iostreams/filter/gzip.hpp> | |
| #include <boost/iostreams/copy.hpp> | |
| #include <boost/program_options.hpp> | |
| #include <boost/regex.hpp> | |
| #include <iostream> |
| #include <random> | |
| #include <algorithm> | |
| #include <iostream> | |
| #include <cmath> | |
| // header file for the hc API | |
| #include <hcc/hc.hpp> | |
| #define N (1024 * 500) |
| # Script to silently install MATLAB components, run as root if installing to /opt | |
| # Requires: `license.lic`, `packages` list and `file-install-key` files | |
| # Download license.lic and create file-install-key file from [MATLAB license centre](https://uk.mathworks.com/licensecenter/licenses) | |
| # Download and extract latest [MATLAB installer](https://uk.mathworks.com/downloads/) | |
| # Download packages `archive` files by running installer graphically first | |
| # Make a package list, uncommenting lines from installer_input, `tail -87 installer_input.txt > packages` | |
| # Check destination directories are correct below | |
| # Destination, MATLAB installer and config files directory |
| QTabBar, | |
| QTabBar::tab | |
| { | |
| font-family: "Noto Sans"; | |
| font-size: 11px; | |
| height: 16px; | |
| padding: 2px; | |
| border: 0px; | |
| border-bottom: 3px solid palette(dark); | |
| background-color: palette(dark); |
| #!/bin/sh | |
| # compute reads length distribution from a fastq file | |
| awk 'NR%4 == 2 {lengths[length($0)]++} END {for (l in lengths) {print l, lengths[l]}}' file.fastq |
| setwd("C:\\Users\\xuwenhao\\Desktop\\bwa output\\nwe_bwa\\polu_length_count\\3p_and_5p") | |
| library(ggplot2) | |
| library(gridExtra) | |
| files=list.files(getwd()) | |
| files <- files[grepl("w*\\.txt$", files)] | |
| ways=unlist(strsplit(getwd(),"/")) | |
| pdf(paste(ways[length(ways)],".pdf",seq=""),family="GB1")#改后缀 | |
| plot_c <- list() | |
| for (f in files) |
| adobe-source-code-pro-fonts | |
| akonadi-calendar-tools | |
| akonadiconsole | |
| akonadi-import-wizard | |
| akregator | |
| alsi | |
| amarok | |
| archlinuxcn-keyring | |
| ark | |
| artikulate |
| ;; -*- mode: emacs-lisp -*- | |
| ;; This file is loaded by Spacemacs at startup. | |
| ;; It must be stored in your home directory. | |
| (defun dotspacemacs/layers () | |
| "Configuration Layers declaration. | |
| You should not put any user code in this function besides modifying the variable | |
| values." | |
| (setq-default | |
| ;; Base distribution to use. This is a layer contained in the directory |