Prepare the database:
mkdir ecoli_many_sigs
cd ecoli_many_sigs
curl -O -L https://github.com/dib-lab/sourmash/raw/master/data/eschericia-sigs.tar.gz
tar xzf eschericia-sigs.tar.gz
cd ../
library(ggplot2) | |
library(tibble) | |
library(ggthemr) | |
setwd(dirname(rstudioapi::getActiveDocumentContext()$path)) | |
# rm(list = ls()) | |
ggthemr('pale', | |
layout = 'scientific', | |
spacing = 2, | |
type = 'inner') |
#pragma once | |
#include <boost/algorithm/string.hpp> | |
#include <boost/algorithm/string_regex.hpp> | |
#include <boost/iostreams/filtering_streambuf.hpp> | |
#include <boost/iostreams/filter/gzip.hpp> | |
#include <boost/iostreams/copy.hpp> | |
#include <boost/program_options.hpp> | |
#include <boost/regex.hpp> | |
#include <iostream> |
#include <random> | |
#include <algorithm> | |
#include <iostream> | |
#include <cmath> | |
// header file for the hc API | |
#include <hcc/hc.hpp> | |
#define N (1024 * 500) |
# Script to silently install MATLAB components, run as root if installing to /opt | |
# Requires: `license.lic`, `packages` list and `file-install-key` files | |
# Download license.lic and create file-install-key file from [MATLAB license centre](https://uk.mathworks.com/licensecenter/licenses) | |
# Download and extract latest [MATLAB installer](https://uk.mathworks.com/downloads/) | |
# Download packages `archive` files by running installer graphically first | |
# Make a package list, uncommenting lines from installer_input, `tail -87 installer_input.txt > packages` | |
# Check destination directories are correct below | |
# Destination, MATLAB installer and config files directory |
QTabBar, | |
QTabBar::tab | |
{ | |
font-family: "Noto Sans"; | |
font-size: 11px; | |
height: 16px; | |
padding: 2px; | |
border: 0px; | |
border-bottom: 3px solid palette(dark); | |
background-color: palette(dark); |
#!/bin/sh | |
# compute reads length distribution from a fastq file | |
awk 'NR%4 == 2 {lengths[length($0)]++} END {for (l in lengths) {print l, lengths[l]}}' file.fastq |
setwd("C:\\Users\\xuwenhao\\Desktop\\bwa output\\nwe_bwa\\polu_length_count\\3p_and_5p") | |
library(ggplot2) | |
library(gridExtra) | |
files=list.files(getwd()) | |
files <- files[grepl("w*\\.txt$", files)] | |
ways=unlist(strsplit(getwd(),"/")) | |
pdf(paste(ways[length(ways)],".pdf",seq=""),family="GB1")#改后缀 | |
plot_c <- list() | |
for (f in files) |
adobe-source-code-pro-fonts | |
akonadi-calendar-tools | |
akonadiconsole | |
akonadi-import-wizard | |
akregator | |
alsi | |
amarok | |
archlinuxcn-keyring | |
ark | |
artikulate |
;; -*- mode: emacs-lisp -*- | |
;; This file is loaded by Spacemacs at startup. | |
;; It must be stored in your home directory. | |
(defun dotspacemacs/layers () | |
"Configuration Layers declaration. | |
You should not put any user code in this function besides modifying the variable | |
values." | |
(setq-default | |
;; Base distribution to use. This is a layer contained in the directory |