Skip to content

Instantly share code, notes, and snippets.

View atarkowska's full-sized avatar

Ola Tarkowska atarkowska

31 followers · 5 following
  • Cambridge, UK
View GitHub Profile
@atarkowska
atarkowska / gist:71ebc9a9b53ed6ca8edf09827f4786b6
Last active August 4, 2016 14:13
meeting
http://users.openmicroscopy.org.uk/~atarkowska/viewer.html
idr-demo.openmicroscopy.org/webgateway/render_thumbnail/122770/96/
http://idr-demo.openmicroscopy.org/webclient/?show=image-122770
@atarkowska
atarkowska / compose
Last active September 21, 2016 13:33
verbose of docker-compose
FILE:docker-compose.yml
test:
image: openmicroscopy/omero-ssh-daemon-c7:0.1.1
ports:
- "2222:22"
test2:
image: openmicroscopy/omero-ssh-daemon-c7:0.1.1
ports:
- "2223:22"
@atarkowska
atarkowska / compose2
Last active September 21, 2016 13:33
verbose of docker-compose v2
FILE: docker-compose2.yml
version: '2'
services:
test:
image: openmicroscopy/omero-ssh-daemon-c7:0.1.1
ports:
- "2222:22"
test2:
@atarkowska
atarkowska / bf.log
Last active July 17, 2016 22:22
BF maven docker build
using:
FROM maven:3.3.3-jdk-8
WORKDIR /usr/src/app/bf.git
ONBUILD RUN mvn install -DskipTests
CMD ["mvn", "install", "-DskipTests"]
maven_1 | [INFO] Scanning for projects...
maven_1 | Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-webdav-jackrabbit/1.0/wagon-webdav-jackrabbit-1.0.pom
Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-webdav-jackrabbit/1.0/wagon-webdav-jackrabbit-1.0.pom (4 KB at 17.6 KB/sec)
@atarkowska
atarkowska / test_missing_maps.py
Created July 4, 2016 13:19
missing maps
import omero, os, traceback
import omero.gateway
import time, datetime
from omero.rtypes import *
from omero.rtypes import unwrap
host = "localhost"
port = 4064
@atarkowska
atarkowska / jquery.html
Created July 4, 2016 08:54
CORS
<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>load demo</title>
<style>
body {
font-size: 12px;
font-family: Arial;
}
@atarkowska
atarkowska / share-group.log
Last active June 26, 2016 07:35
This is an output of OMERO CLI to prepare users and groups and then put group into share to override the default group permission making it rear-only and sharing with public user
+ echo 'create public user'
create public user
+ /home/omero/workspace/OMERO-server/OMERO.server/bin/omero login -u root -w omero -s localhost -p 4064
Created session acc7b1af-82a2-4762-b9ff-a30ada1c0676 (root@localhost:4064). Idle timeout: 10 min. Current group: system
+ /home/omero/workspace/OMERO-server/OMERO.server/bin/omero group add public --perms rwr---
Using session acc7b1af-82a2-4762-b9ff-a30ada1c0676 (root@localhost:4064). Idle timeout: 10 min. Current group: system
Added group public (id=3) with permissions rwr---
+ /home/omero/workspace/OMERO-server/OMERO.server/bin/omero user add public Public User --group-name public -P ome
Using session acc7b1af-82a2-4762-b9ff-a30ada1c0676 (root@localhost:4064). Idle timeout: 10 min. Current group: system
Added user public (id=2) with password
@atarkowska
atarkowska / share-group.py
Last active June 26, 2016 07:30
This is example script for https://github.com/openmicroscopy/openmicroscopy/pull/4730
import omero, os
host = "localhost"
port = 4064
user = "user-1"
password = "ome"
c = omero.client(host=host, port=port)
s = c.createSession(user, password)
@atarkowska
atarkowska / mapannotation_remove_duplicates
Last active July 1, 2016 15:53
Remove duplicates of MapAnnotations
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2016 University of Dundee.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as
# published by the Free Software Foundation, either version 3 of the
# License, or (at your option) any later version.
#
@atarkowska
atarkowska / test_mapannotation
Last active June 9, 2016 10:36
MapAnnotation vs NamedValue
import omero, os
import omero.gateway
from omero.rtypes import *
from omero.rtypes import unwrap
host = "localhost"
port = 4064
pass = "ome"
user = "test"