jkbonfield

#!/usr/bin/perl -w

# Uses figures from https://www.biorxiv.org/content/early/2016/03/15/043794
# to add random C methylation to a SAM file, storing in a variety of ways.

use strict;

srand(0);

my $method = shift(@ARGV);

jurgjn

#!/usr/bin/python
# Force to use (system) python2
#!/usr/bin/env python

description = """\
Usage: BaseSpaceRunDownloader_v2.py -r <ProjectName> -a <AccessToken>

This is a modified version of the BaseSpace Python Run Downloader from Illumina. It takes 
the project name (instead of the run id) and downloads base calls as fastq files (instead of
the image/intensity data).

bearloga

library(shiny)
library(ggplot2)

# Download DataTables JS file and TableTools full package from http://datatables.net/download/
# Change the paths appropriately:
addResourcePath('datatables','/Users/yourusername/Downloads/DataTables-1.9.4/media')
addResourcePath('tabletools','/Users/yourusername/Downloads/TableTools-2.1.5/media')

runApp(list(
	ui = basicPage(