makefile

makefile

.PHONY: upload submit user

DOCKER_PATH=/home/stenegru/Software/test/LocalEGA/deployments/docker
GPG_EXEC=/usr/bin/gpg2
# GPG_EXEC=gpg
SSH_KEY_PUB=~/.ssh/dummy.key.pub
SSH_KEY_PRIV=~/.ssh/dummy.key

INSTANCE_PORT=$(shell awk -F= '/DOCKER_PORT_inbox/ {print $$2}' $(DOCKER_PATH)/bootstrap/settings/swe1)
GPG_HOME=$(DOCKER_PATH)/private/swe1/gpg
PGP_PUB=$(DOCKER_PATH)/private/swe1/pgp/ega.pub
PGP_EMAIL=$(shell awk -F= '/PGP_EMAIL/ {print $$2}' $(DOCKER_PATH)/bootstrap/settings/swe1)
CEGA_USERS=$(DOCKER_PATH)/private/cega/users
CEGA_MQ_CONNECTION=$(shell awk -F= '/^CEGA_CONNECTION/ {print $$2}' $(DOCKER_PATH)/private/swe1/mq.env)

##############################

USER=ega-box-999
#USER=toto
FILE=HG00458.unmapped.ILLUMINA.bwa.CHS.low_coverage.20130415.bam

all: user upload submit

# org:
#     @cp ~/Desktop/HG00458.unmapped.ILLUMINA.bwa.CHS.low_coverage.20130415.bam .

$(FILE).gpg: $(FILE)
	@mkdir -p dir $(GPG_HOME)
	$(GPG_EXEC) --homedir $(GPG_HOME) --import $(PGP_PUB)
	$(GPG_EXEC) --homedir $(GPG_HOME) -r $(PGP_EMAIL) -e -o $@ $<

upload: $(FILE).gpg $(FILE).gpg.md5 $(FILE).md5
	cd $(<D) && sftp -P $(INSTANCE_PORT) -i $(SSH_KEY_PRIV) $(USER)@localhost <<< $$"mput $(^F)"

$(FILE).gpg.md5: $(FILE).gpg
	printf '%s' $(shell md5sum $< | cut -d' ' -f1) > $@

$(FILE).md5: $(FILE)
	printf '%s' $(shell md5sum $< | cut -d' ' -f1) > $@

submit: $(FILE).gpg $(FILE).gpg.md5 $(FILE).md5
	@echo publish.py --connection amqp://[redacted]@$(lastword $(subst @, ,$(CEGA_MQ_CONNECTION))) $(USER) dir/$(FILE).gpg --unenc ... --enc ...
	@python $(DOCKER_PATH)/../../extras/publish.py --connection $(subst cega-mq,localhost,$(CEGA_MQ_CONNECTION)) $(USER) $(FILE).gpg --unenc $(shell cat $(FILE).md5) --enc $(shell cat $(FILE).gpg.md5) EGAF$(shell cat $(FILE).md5)

user: $(CEGA_USERS)/swe1/$(USER).yml

$(CEGA_USERS)/swe1/$(USER).yml: $(CEGA_USERS)/$(USER).yml
	-cd $(CEGA_USERS)/swe1 && ln -s ../$(USER).yml .

$(CEGA_USERS)/$(USER).yml:
	@echo --- > $@
	@echo "pubkey: $(shell cat $(SSH_KEY_PUB))" >> $@

clean:
	-unlink $(CEGA_USERS)/swe1/$(USER).yml
	rm -rf $(FILE).gpg $(FILE).gpg.md5 $(FILE).md5 $(CEGA_USERS)/$(USER).yml $(GPG_HOME)